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tutorial PEO modified

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git-svn-id: svn://scm.gforge.inria.fr/svnroot/paradiseo@903 331e1502-861f-0410-8da2-ba01fb791d7f
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canape 2008-01-24 14:52:36 +00:00
commit 15db5e4fea
37 changed files with 512 additions and 832 deletions
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9
trunk/paradiseo-peo/tutorial/Lesson1/CMakeLists.txt
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@ -21,13 +21,6 @@ ADD_CUSTOM_COMMAND(
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson1/Lesson1.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson1)
######################################################################################
@ -36,7 +29,7 @@ ADD_CUSTOM_COMMAND(
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################

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29
trunk/paradiseo-peo/tutorial/Lesson1/mainEA.cpp
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@ -77,20 +77,10 @@ int main (int __argc, char *__argv[])
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
/* In this lesson, you should define a peoEvalFunc witch will allow to initialize :
*
* - peoSeqPopEval : using to the sequential evaluation
*
* OR
*
* - peoParaPopEval : using to the parallel evaluation
*
*/
// For a parallel evaluation
peoEvalFunc<Indi> plainEval(f);
peoParaPopEval< Indi > eval(plainEval);
peoPopEval <Indi> eval(plainEval);
// Initialization
@ -105,21 +95,26 @@ int main (int __argc, char *__argv[])
eoSegmentCrossover<Indi> crossover; // Crossover
eoUniformMutation<Indi> mutation(EPSILON); // Mutation
eoSGATransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
peoSeqTransform<Indi> eaTransform(transform);
// Replacement
eoPlusReplacement<Indi> replace;
// Creation of the population
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Algorithm
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
//Parallel algorithm
peoEA<Indi> Algo(checkpoint,eval,select,eaTransform,replace);
Algo(pop);
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

54
trunk/paradiseo-peo/tutorial/Lesson1/mainPSO.cpp
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@ -71,12 +71,11 @@ int main (int __argc, char *__argv[])
const double INIT_POSITION_MIN = -2.0; // For initialize x
const double INIT_POSITION_MAX = 2.0; // In the case of the Rosenbrock function : -2 < x[i] < 2
const double INIT_VELOCITY_MIN = -1.; // For initialize PSO's velocity
const double INIT_VELOCITY_MAX = 1.; // ie Lesson 6 of ParadisEO-EO
const double C1 = 0.5; // For calculate the velocity
const double C2 = 2.; // ie Lesson 6 of ParadisEO-EO
const double INIT_VELOCITY_MIN = -1.;
const double INIT_VELOCITY_MAX = 1.;
const double weight = 1;
const double C1 = 0.5;
const double C2 = 2.;
rng.reseed (time(0));
// Stopping
@ -85,38 +84,22 @@ int main (int __argc, char *__argv[])
eoCheckPoint<Indi> checkpoint(continuatorPara);
/* In this lesson, you should define a peoEvalFuncPSO witch will allow to initialize :
*
* - peoSeqPopEval : using to the sequential evaluation
*
* OR
*
* - peoParaPopEval : using to the parallel evaluation
*
*/
// For a parallel evaluation
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoParaPopEval< Indi > eval(plainEval);
peoPopEval< Indi > eval(plainEval);
// Initialization
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
// Velocity (ie Lesson 6 of ParadisEO-PEO)
// Velocity
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
// Initializing the best (ie Lesson 6 of ParadisEO-PEO)
// Initializing the best
eoFirstIsBestInit < Indi > localInit;
// Flight (ie Lesson 6 of ParadisEO-PEO)
// Flight
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
@ -124,19 +107,24 @@ int main (int __argc, char *__argv[])
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
// Initialization
peoInitializer <Indi> init(eval,veloRandom,localInit,pop);
// Topology (ie Lesson 6 of ParadisEO-PEO)
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,C1,C2,bnds);
eoStandardVelocity < Indi > velocity (topology,weight,C1,C2,bnds);
// Initialization
eoInitializer <Indi> init(eval,veloRandom,localInit,topology,pop);
//Parallel algorithm
peoPSO < Indi > psa(init,checkpoint, eval, velocity, flight);
psa(pop);
eoSyncEasyPSO <Indi> psa(init,checkpoint,eval, velocity, flight);
peoWrapper parallelPSO( psa, pop);
eval.setOwner(parallelPSO);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

9
trunk/paradiseo-peo/tutorial/Lesson2/CMakeLists.txt
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@ -21,13 +21,6 @@ ADD_CUSTOM_COMMAND(
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson2)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson2/Lesson2.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson2)
######################################################################################
@ -36,7 +29,7 @@ ADD_CUSTOM_COMMAND(
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################

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51
trunk/paradiseo-peo/tutorial/Lesson2/mainEA.cpp
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@ -52,54 +52,43 @@ int main (int __argc, char *__argv[])
{
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int MAX_GEN = 300;
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int MAX_GEN = 300;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const float CROSS_RATE = 0.8;
const double EPSILON = 0.01;
const float MUT_RATE = 0.3;
const double INIT_POSITION_MAX = 2.0;
const float CROSS_RATE = 0.8;
const double EPSILON = 0.01;
const float MUT_RATE = 0.3;
rng.reseed (time(0));
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi> plainEval(f);
peoSeqPopEval< Indi > eval(plainEval); // Here, the evaluation is sequential
peoPopEval <Indi> eval(plainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
eoSegmentCrossover<Indi> crossover;
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
/******************************************************************************************/
/* In this lesson, you can choose between :
*
* - A sequential transformation (crossover + mutation) : eoSGATransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
* peoSeqTransform<Indi> eaTransform(transform);
*
* OR
*
* - A parallel transformation (crossover + mutation) : peoParaSGATransform <Indi> eaTransform(crossover,CROSS_RATE,mutation,MUT_RATE);
*
* Unfortunately, if you don't use a crossover which creates two children with two parents,
* you can't use this operator.
* In this case, you should send a mail to : paradiseo-help@lists.gforge.inria.fr
*/
peoParaSGATransform <Indi> eaTransform(crossover,CROSS_RATE,mutation,MUT_RATE);
/******************************************************************************************/
peoTransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
eoPlusReplacement<Indi> replace;
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
peoEA<Indi> Algo(checkpoint,eval,select,eaTransform,replace);
Algo(pop);
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
transform.setOwner (parallelEA);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

9
trunk/paradiseo-peo/tutorial/Lesson3/CMakeLists.txt
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@ -21,13 +21,6 @@ ADD_CUSTOM_COMMAND(
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson3/Lesson3.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson3)
######################################################################################
@ -36,7 +29,7 @@ ADD_CUSTOM_COMMAND(
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################

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75
trunk/paradiseo-peo/tutorial/Lesson3/mainEA.cpp
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@ -71,77 +71,72 @@ int main (int __argc, char *__argv[])
// First algorithm
/*****************************************************************************************/
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi> plainEval(f);
peoSeqPopEval< Indi > eval(plainEval); // Here, the evaluation is sequential
peoEvalFunc<Indi> mainEval( f );
peoPopEval <Indi> eval(mainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
eoSGATransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
peoSeqTransform<Indi> eaTransform(transform); // Here, the transformation is sequential
eoUniformMutation<Indi> mutation(EPSILON);
peoTransform<Indi> transform(crossover,CROSS_RATE,mutation,MUT_RATE);
peoPop < Indi > pop;
pop.append (POP_SIZE, random);
eoPlusReplacement<Indi> replace;
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
eoPeriodicContinue <Indi> mig_cont( MIG_FREQ ); // Migration occurs periodically
eoRandomSelect<Indi> mig_select_one; // Emigrants are randomly selected
eoSelectNumber<Indi> mig_select (mig_select_one,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace; // Immigrants replace the worse individuals
eoRandomSelect<Indi> mig_select_one;
eoSelector <Indi, peoPop<Indi> > mig_select (mig_select_one,MIG_SIZE,pop);
eoReplace <Indi, peoPop<Indi> > mig_replace (replace,pop);
peoSyncIslandMig<Indi, peoPop<Indi> > mig(MIG_FREQ,mig_select,mig_replace,topology,pop,pop);
checkpoint.add(mig);
eoEasyEA< Indi > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
eval.setOwner(parallelEA);
transform.setOwner(parallelEA);
mig.setOwner(parallelEA);
/*****************************************************************************************/
// Second algorithm (on the same model but with others names)
/*****************************************************************************************/
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara2 (genContPara2);
eoCheckPoint<Indi> checkpoint2(continuatorPara2);
peoEvalFunc<Indi> plainEval2(f);
peoSeqPopEval< Indi > eval2(plainEval2);
peoEvalFunc<Indi> mainEval2( f );
peoPopEval <Indi> eval2(mainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoRankingSelect<Indi> selectionStrategy2;
eoSelectNumber<Indi> select2(selectionStrategy2,POP_SIZE);
eoSegmentCrossover<Indi> crossover2;
eoUniformMutation<Indi> mutation2(EPSILON);
eoSGATransform<Indi> transform2(crossover2,CROSS_RATE,mutation2,MUT_RATE);
peoSeqTransform<Indi> eaTransform2(transform2);
eoUniformMutation<Indi> mutation2(EPSILON);
peoTransform<Indi> transform2(crossover2,CROSS_RATE,mutation2,MUT_RATE);
peoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
eoPlusReplacement<Indi> replace2;
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
eoPeriodicContinue <Indi> mig_cont2( MIG_FREQ );
eoRandomSelect<Indi> mig_select_one2;
eoSelectNumber<Indi> mig_select2 (mig_select_one2,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace2;
eoSelector <Indi, peoPop<Indi> > mig_select2 (mig_select_one2,MIG_SIZE,pop2);
eoReplace <Indi, peoPop<Indi> > mig_replace2 (replace2,pop2);
peoSyncIslandMig<Indi, peoPop<Indi> > mig2(MIG_FREQ,mig_select2,mig_replace2,topology,pop2,pop2);
checkpoint2.add(mig2);
eoEasyEA< Indi > eaAlg2( checkpoint2, eval2, select2, transform2, replace2 );
peoWrapper parallelEA2( eaAlg2, pop2);
eval2.setOwner(parallelEA2);
transform2.setOwner(parallelEA2);
mig2.setOwner(parallelEA2);
/*****************************************************************************************/
// You can choose between :
//
// - Synchronous communication : peoSyncIslandMig<Indi> mig(MIG_FREQ,mig_select,mig_replace,topology,pop,pop);
// - Asynchronous communication : peoAsyncIslandMig<Indi> mig(mig_cont,mig_select,mig_replace,topology,pop,pop);
// With a grid, you should use an asynchronous communication
peoAsyncIslandMig<Indi> mig(mig_cont,mig_select,mig_replace,topology,pop,pop2);
checkpoint.add(mig);
peoAsyncIslandMig<Indi> mig2(mig_cont2,mig_select2,mig_replace2,topology,pop2,pop);
checkpoint2.add(mig2);
// Initialization of the algorithms
peoEA<Indi> Algo(checkpoint,eval,select,eaTransform,replace);
mig.setOwner(Algo);
Algo(pop);
peoEA<Indi> Algo2(checkpoint2,eval2,select2,eaTransform2,replace2);
mig2.setOwner(Algo2);
Algo2(pop2);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
pop2.sort();
std::cout << "Final population 1 :\n" << pop << std::endl;
std::cout << "Final population 2 :\n" << pop2 << std::endl;
}

127
trunk/paradiseo-peo/tutorial/Lesson3/mainPSO.cpp
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@ -49,37 +49,31 @@ double f (const Indi & _indi)
int main (int __argc, char *__argv[])
{
// In this lesson, we define two algorithms of the PSO witch represents two islands.
// Obviously, you can define more algorithms.
// The parameters are common between the two algorithms.
/*****************************************************************************************/
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int NEIGHBORHOOD_SIZE= 6;
const unsigned int MAX_GEN = 150;
const unsigned int MAX_GEN = 100;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const double INIT_POSITION_MAX = 2.0;
const double INIT_VELOCITY_MIN = -1.;
const double INIT_VELOCITY_MAX = 1.;
const unsigned int MIG_FREQ = 10;
const double omega = 1;
const double C1 = 0.5;
const double C2 = 2.;
// C3 is used for the calculation of one of the strategies of the island model.
const double C3 = 2.;
// MIG_FREQ define the frequency of the migration.
const unsigned int MIG_FREQ = 10; // The optimal value is 1 or 2 for the component peoPSOVelocity.
const double C2 = 2.;
rng.reseed (time(0));
/*****************************************************************************************/
// Define the topology of your island model
// Island model
RingTopology topologyMig;
// First algorithm
/*****************************************************************************************/
// First
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoSeqPopEval< Indi > eval(plainEval); // Here, the evaluation is sequential !
peoPopEval< Indi > eval(plainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
@ -87,27 +81,33 @@ int main (int __argc, char *__argv[])
eoFirstIsBestInit < Indi > localInit;
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
eoPop < Indi > pop;
peoPop < Indi > pop;
pop.append (POP_SIZE, random);
peoInitializer <Indi> init(eval,veloRandom,localInit,pop);
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,C1,C2,bnds);
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCheckPoint<Indi> checkpoint(genContPara);
// Specific implementation for the island model
eoStandardVelocity < Indi > velocity (topology,omega,C1,C2,bnds);
eoInitializer <Indi> init(eval,veloRandom,localInit,topology,pop);
// Island model
eoPeriodicContinue< Indi > mig_cont( MIG_FREQ );
peoPSOSelect<Indi> mig_selec(topology);
eoSelectNumber< Indi > mig_select(mig_selec);
// If you want to use a replacement stategy : peoPSOReplacement<Indi> mig_replace;
// If you want to use a consideration of the migration in the calculation of the velocity : peoPSOVelocity<Indi> mig_replace(C3,velocity);
peoPSOReplacement<Indi> mig_replace;
/*****************************************************************************************/
peoWorstPositionReplacement<Indi> mig_replac;
// Specific implementation (peoData.h)
eoContinuator<Indi> cont(mig_cont, pop);
eoSelector <Indi, peoPop<Indi> > mig_select (mig_selec,1,pop);
eoReplace <Indi, peoPop<Indi> > mig_replace (mig_replac,pop);
// Second algorithm (on the same model but with others names)
/*****************************************************************************************/
// Second
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara2 (genContPara2);
eoCheckPoint<Indi> checkpoint2(continuatorPara2);
peoEvalFunc<Indi, double, const Indi& > plainEval2(f);
peoSeqPopEval< Indi > eval2(plainEval2);
peoPopEval< Indi > eval2(plainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoUniformGenerator < double >sGen2 (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
@ -115,38 +115,51 @@ int main (int __argc, char *__argv[])
eoFirstIsBestInit < Indi > localInit2;
eoRealVectorBounds bndsFlight2(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight2(bndsFlight2);
eoPop < Indi > pop2;
peoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
peoInitializer <Indi> init2(eval2,veloRandom2,localInit2,pop2);
eoLinearTopology<Indi> topology2(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds2(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity2 (topology2,C1,C2,bnds2);
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCheckPoint<Indi> checkpoint2(genContPara2);
eoStandardVelocity < Indi > velocity2 (topology2,omega,C1,C2,bnds2);
eoInitializer <Indi> init2(eval2,veloRandom2,localInit2,topology2,pop2);
// Island model
eoPeriodicContinue< Indi > mig_cont2( MIG_FREQ );
peoPSOSelect<Indi> mig_selec2(topology2);
eoSelectNumber< Indi > mig_select2(mig_selec2);
peoPSOReplacement<Indi> mig_replace2;
/*****************************************************************************************/
peoWorstPositionReplacement<Indi> mig_replac2;
// Define the communication between the islands
peoAsyncIslandMig< Indi > mig( mig_cont, mig_select, mig_replace, topologyMig, pop, pop);
// Specific implementation (peoData.h)
eoContinuator<Indi> cont2(mig_cont2,pop2);
eoSelector <Indi, peoPop<Indi> > mig_select2 (mig_selec2,1,pop2);
eoReplace <Indi, peoPop<Indi> > mig_replace2 (mig_replac2,pop2);
// Island model
peoAsyncIslandMig< Indi, peoPop<Indi> > mig(cont,mig_select, mig_replace, topologyMig, pop, pop);
checkpoint.add( mig );
peoAsyncIslandMig< Indi > mig2( mig_cont2, mig_select2, mig_replace2, topologyMig, pop2, pop2);
peoAsyncIslandMig< Indi, peoPop<Indi> > mig2(cont2,mig_select2, mig_replace2, topologyMig, pop2, pop2);
checkpoint2.add( mig2 );
// Initialization of the algorithms
peoPSO < Indi > psa(init,checkpoint, eval, velocity, flight);
mig.setOwner( psa );
psa(pop);
peoPSO < Indi > psa2(init2,checkpoint2, eval2, velocity2, flight2);
mig2.setOwner( psa2 );
psa2(pop2);
// Parallel algorithm
eoSyncEasyPSO <Indi> psa(init,checkpoint,eval, velocity, flight);
peoWrapper parallelPSO( psa, pop);
eval.setOwner(parallelPSO);
mig.setOwner(parallelPSO);
eoSyncEasyPSO <Indi> psa2(init2,checkpoint2,eval2, velocity2, flight2);
peoWrapper parallelPSO2( psa2, pop2);
eval2.setOwner(parallelPSO2);
mig2.setOwner(parallelPSO2);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
std::cout << "Population 1 :\n" << pop << std::endl;
std::cout << "Population 2 :\n" << pop2 << std::endl;
}
{
pop.sort();
pop2.sort();
std::cout << "Final population :\n" << pop << std::endl;
std::cout << "Final population :\n" << pop2 << std::endl;
}
}

34
trunk/paradiseo-peo/tutorial/Lesson4/CMakeLists.txt
View file

@ -21,13 +21,6 @@ ADD_CUSTOM_COMMAND(
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson4)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson4/Lesson4.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson4)
######################################################################################
@ -36,7 +29,7 @@ ADD_CUSTOM_COMMAND(
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
######################################################################################
@ -46,13 +39,14 @@ INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_D
######################################################################################
IF(NOT WIN32 OR CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${MOEO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
ENDIF(NOT WIN32 OR CYGWIN)
# especially for Visual Studio
IF(WIN32 AND NOT CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
ENDIF(WIN32 AND NOT CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${TSP_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
@ -60,10 +54,11 @@ ENDIF(WIN32 AND NOT CYGWIN)
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(pso mainPSO.cpp)
ADD_DEPENDENCIES(pso peo rmc_mpi)
ADD_EXECUTABLE(ea mainEA.cpp)
ADD_DEPENDENCIES(ea peo rmc_mpi)
ADD_EXECUTABLE(lsea mainLSEA.cpp)
ADD_DEPENDENCIES(lsea tsp peo rmc_mpi)
ADD_EXECUTABLE(eals mainEALS.cpp)
ADD_DEPENDENCIES(eals tsp peo rmc_mpi)
######################################################################################
@ -72,8 +67,9 @@ ADD_DEPENDENCIES(ea peo rmc_mpi)
######################################################################################
SET(LESSON4_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(pso PROPERTIES VERSION "${LESSON4_VERSION}")
SET_TARGET_PROPERTIES(ea PROPERTIES VERSION "${LESSON4_VERSION}")
SET_TARGET_PROPERTIES(lsea PROPERTIES VERSION "${LESSON4_VERSION}")
SET_TARGET_PROPERTIES(eals PROPERTIES VERSION "${LESSON4_VERSION}")
######################################################################################
@ -81,8 +77,8 @@ SET_TARGET_PROPERTIES(ea PROPERTIES VERSION "${LESSON4_VERSION}")
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(pso ${XML2_LIBS} peo rmc_mpi eo eoutils)
TARGET_LINK_LIBRARIES(ea ${XML2_LIBS} peo rmc_mpi eo eoutils)
TARGET_LINK_LIBRARIES(lsea ${XML2_LIBS} tsp peo rmc_mpi eo eoutils)
TARGET_LINK_LIBRARIES(eals ${XML2_LIBS} tsp peo rmc_mpi eo eoutils)
######################################################################################

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trunk/paradiseo-peo/tutorial/Lesson4/Lesson4.pdf
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152
trunk/paradiseo-peo/tutorial/Lesson4/mainEA.cpp
View file

@ -1,152 +0,0 @@
/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, INRIA, 2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoReal<double> Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// In this lesson, we can see an example of an evolutionary algorithms with three islands.
// The evaluation is parallel.
// The transformation is parallel.
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int MAX_GEN = 300;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const float CROSS_RATE = 0.8;
const double EPSILON = 0.01;
const float MUT_RATE = 0.3;
const unsigned int MIG_FREQ = 10;
const unsigned int MIG_SIZE = 5;
rng.reseed (time(0));
RingTopology topology;
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
peoEvalFunc<Indi> plainEval(f);
peoParaPopEval< Indi > eval(plainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoRankingSelect<Indi> selectionStrategy;
eoSelectNumber<Indi> select(selectionStrategy,POP_SIZE);
eoSegmentCrossover<Indi> crossover;
eoUniformMutation<Indi> mutation(EPSILON);
peoParaSGATransform <Indi> eaTransform(crossover,CROSS_RATE,mutation,MUT_RATE);
eoPlusReplacement<Indi> replace;
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
eoPeriodicContinue <Indi> mig_cont( MIG_FREQ );
eoRandomSelect<Indi> mig_select_one;
eoSelectNumber<Indi> mig_select (mig_select_one,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace;
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara2 (genContPara2);
eoCheckPoint<Indi> checkpoint2(continuatorPara2);
peoEvalFunc<Indi> plainEval2(f);
peoParaPopEval< Indi > eval2(plainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoRankingSelect<Indi> selectionStrategy2;
eoSelectNumber<Indi> select2(selectionStrategy2,POP_SIZE);
eoSegmentCrossover<Indi> crossover2;
eoUniformMutation<Indi> mutation2(EPSILON);
peoParaSGATransform <Indi> eaTransform2(crossover2,CROSS_RATE,mutation2,MUT_RATE);
eoPlusReplacement<Indi> replace2;
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
eoPeriodicContinue <Indi> mig_cont2( MIG_FREQ );
eoRandomSelect<Indi> mig_select_one2;
eoSelectNumber<Indi> mig_select2 (mig_select_one2,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace2;
eoGenContinue < Indi > genContPara3 (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara3 (genContPara3);
eoCheckPoint<Indi> checkpoint3(continuatorPara3);
peoEvalFunc<Indi> plainEval3(f);
peoParaPopEval< Indi > eval3(plainEval3);
eoUniformGenerator < double >uGen3 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random3 (VEC_SIZE, uGen3);
eoRankingSelect<Indi> selectionStrategy3;
eoSelectNumber<Indi> select3(selectionStrategy3,POP_SIZE);
eoSegmentCrossover<Indi> crossover3;
eoUniformMutation<Indi> mutation3(EPSILON);
peoParaSGATransform <Indi> eaTransform3(crossover3,CROSS_RATE,mutation3,MUT_RATE);
eoPlusReplacement<Indi> replace3;
eoPop < Indi > pop3;
pop3.append (POP_SIZE, random3);
eoPeriodicContinue <Indi> mig_cont3( MIG_FREQ );
eoRandomSelect<Indi> mig_select_one3;
eoSelectNumber<Indi> mig_select3 (mig_select_one3,MIG_SIZE);
eoPlusReplacement<Indi> mig_replace3;
peoAsyncIslandMig<Indi> mig(mig_cont,mig_select,mig_replace,topology,pop,pop2);
checkpoint.add(mig);
peoAsyncIslandMig<Indi> mig2(mig_cont2,mig_select2,mig_replace2,topology,pop2,pop);
checkpoint2.add(mig2);
peoAsyncIslandMig<Indi> mig3(mig_cont3,mig_select3,mig_replace3,topology,pop3,pop);
checkpoint3.add(mig3);
peoEA<Indi> Algo(checkpoint,eval,select,eaTransform,replace);
mig.setOwner(Algo);
Algo(pop);
peoEA<Indi> Algo2(checkpoint2,eval2,select2,eaTransform2,replace2);
mig2.setOwner(Algo2);
Algo2(pop2);
peoEA<Indi> Algo3(checkpoint3,eval3,select3,eaTransform3,replace3);
mig3.setOwner(Algo3);
Algo3(pop3);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
std::cout << "Final population 1 :\n" << pop << std::endl;
std::cout << "Final population 2 :\n" << pop2 << std::endl;
std::cout << "Final population 3 :\n" << pop3 << std::endl;
}
}

90
trunk/paradiseo-peo/tutorial/Lesson5/example.cpp → trunk/paradiseo-peo/tutorial/Lesson4/mainEALS.cpp
View file

@ -1,9 +1,9 @@
/*
* <example.cpp>
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, LIFL, 2002-2007
* (C) OPAC Team, INRIA, 2007
*
* Sebastien Cahon, Alexandru-Adrian Tantar, Clive Canape
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
@ -33,11 +33,7 @@
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
// (c) OPAC Team, LIFL, 2007
//
// Contact: paradiseo-help@lists.gforge.inria.fr
// Libraries of problem
#include "param.h"
#include "route_init.h"
#include "route_eval.h"
@ -54,7 +50,7 @@
#include <peo>
#define POP_SIZE 10
#define NUM_GEN 10
#define NUM_GEN 100
#define CROSS_RATE 1.0
#define MUT_RATE 0.01
@ -62,57 +58,57 @@
int main (int __argc, char * * __argv)
{
// Example of a problem (TSP) with an hybridization
peo :: init (__argc, __argv);
loadParameters (__argc, __argv); /* Processing some parameters relative to the tackled
problem (TSP) */
RouteInit route_init; /* Its builds random routes */
RouteEval full_eval; /* Full route evaluator */
OrderXover order_cross; /* Recombination */
loadParameters (__argc, __argv);
RouteInit route_init;
RouteEval full_eval;
OrderXover order_cross;
PartialMappedXover pm_cross;
EdgeXover edge_cross;
CitySwap city_swap_mut; /* Mutation */
CitySwap city_swap_mut;
/** Local Search */
// Initialization of the local search
TwoOptInit pmx_two_opt_init;
TwoOptNext pmx_two_opt_next;
TwoOptIncrEval pmx_two_opt_incr_eval;
moBestImprSelect <TwoOpt> pmx_two_opt_move_select;
moHC <TwoOpt> hc (pmx_two_opt_init, pmx_two_opt_next, pmx_two_opt_incr_eval, pmx_two_opt_move_select, full_eval);
/** The EA */
eoPop <Route> ox_pop (POP_SIZE, route_init); /* Population */
eoGenContinue <Route> ox_cont (NUM_GEN); /* A fixed number of iterations */
eoCheckPoint <Route> ox_checkpoint (ox_cont); /* Checkpoint */
peoSeqPopEval <Route> ox_pop_eval (full_eval);
eoStochTournamentSelect <Route> ox_select_one;
eoSelectNumber <Route> ox_select (ox_select_one, POP_SIZE);
eoSGATransform <Route> ox_transform (order_cross, CROSS_RATE, city_swap_mut, MUT_RATE);
peoSeqTransform <Route> ox_para_transform (ox_transform);
eoEPReplacement <Route> ox_replace (2);
peoEA <Route> ox_ea (ox_checkpoint, ox_pop_eval, ox_select, ox_para_transform, ox_replace);
ox_ea (ox_pop); /* Application to the given population */
// EA
eoPop <Route> pop (POP_SIZE, route_init);
eoGenContinue <Route> cont (NUM_GEN);
eoCheckPoint <Route> checkpoint (cont);
eoEvalFuncCounter< Route > eval(full_eval);
eoStochTournamentSelect <Route> select_one;
eoSelectNumber <Route> select (select_one, POP_SIZE);
eoSGATransform <Route> transform (order_cross, CROSS_RATE, city_swap_mut, MUT_RATE);
eoEPReplacement <Route> replace (2);
eoEasyEA< Route > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
peo :: run ();
peo :: finalize (); /* Termination */
peo :: finalize ();
if (getNodeRank()==1)
std :: cout << "\nResult : "<<ox_pop[ 0 ].fitness();
hc( ox_pop[ 0 ] );
{
pop.sort();
std :: cout << "\nResult before the local search\n";
for(unsigned i=0;i<pop.size();i++)
std::cout<<"\n"<<pop[i].fitness();
}
// Local search
peo :: init (__argc, __argv);
peoMultiStart <Route> initParallelHC (hc);
peoWrapper parallelHC (initParallelHC, pop);
initParallelHC.setOwner(parallelHC);
peo :: run( );
peo :: finalize( );
if (getNodeRank()==1)
std :: cout << "\n\nAfter an hybridization : " << ox_pop[ 0 ].fitness() << std :: endl;
return 0;
{
std :: cout << "\nResult after the local search\n";
pop.sort();
for(unsigned i=0;i<pop.size();i++)
std::cout<<"\n"<<pop[i].fitness();
}
}

113
trunk/paradiseo-peo/tutorial/Lesson4/mainLSEA.cpp Normal file
View file

@ -0,0 +1,113 @@
/* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, INRIA, 2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include "param.h"
#include "route_init.h"
#include "route_eval.h"
#include "order_xover.h"
#include "edge_xover.h"
#include "partial_mapped_xover.h"
#include "city_swap.h"
#include "part_route_eval.h"
#include "merge_route_eval.h"
#include "two_opt_init.h"
#include "two_opt_next.h"
#include "two_opt_incr_eval.h"
#include <peo>
#define POP_SIZE 10
#define NUM_GEN 200
#define CROSS_RATE 1.0
#define MUT_RATE 0.1
int main (int __argc, char * * __argv)
{
peo :: init (__argc, __argv);
loadParameters (__argc, __argv);
RouteInit route_init;
RouteEval full_eval;
OrderXover order_cross;
PartialMappedXover pm_cross;
EdgeXover edge_cross;
CitySwap city_swap_mut;
// Local search
TwoOptInit pmx_two_opt_init;
TwoOptNext pmx_two_opt_next;
TwoOptIncrEval pmx_two_opt_incr_eval;
moBestImprSelect <TwoOpt> pmx_two_opt_move_select;
moHC <TwoOpt> hc (pmx_two_opt_init, pmx_two_opt_next, pmx_two_opt_incr_eval, pmx_two_opt_move_select, full_eval);
eoPop <Route> pop (POP_SIZE, route_init);
peoMultiStart <Route> initParallelHC (hc);
peoWrapper parallelHC (initParallelHC, pop);
initParallelHC.setOwner(parallelHC);
peo :: run( );
peo :: finalize( );
if (getNodeRank()==1)
{
std :: cout << "\nResult before the EA\n";
pop.sort();
for(unsigned i=0;i<pop.size();i++)
std::cout<<"\n"<<pop[i].fitness();
std :: cout << "\n\n";
}
// EA
peo :: init (__argc, __argv);
eoGenContinue <Route> cont (NUM_GEN);
eoCheckPoint <Route> checkpoint (cont);
eoEvalFuncCounter< Route > eval(full_eval);
eoStochTournamentSelect <Route> select_one;
eoSelectNumber <Route> select (select_one, POP_SIZE);
eoSGATransform <Route> transform (order_cross, CROSS_RATE, city_swap_mut, MUT_RATE);
eoEPReplacement <Route> replace (2);
eoEasyEA< Route > eaAlg( checkpoint, eval, select, transform, replace );
peoWrapper parallelEA( eaAlg, pop);
peo :: run ();
peo :: finalize ();
if (getNodeRank()==1)
{
std :: cout << "\nResult after the EA\n";
pop.sort();
for(unsigned i=0;i<pop.size();i++)
std::cout<<"\n"<<pop[i].fitness();
std :: cout << "\n\n";
}
}

159
trunk/paradiseo-peo/tutorial/Lesson4/mainPSO.cpp
View file

@ -1,159 +0,0 @@
/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, INRIA, 2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
typedef eoRealParticle < double >Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
int main (int __argc, char *__argv[])
{
// In this lesson, we can see an example of a PSO with three islands.
// The strategy of migration is the replacement.
// The evaluation is parallel.
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int NEIGHBORHOOD_SIZE= 6;
const unsigned int MAX_GEN = 150;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const double INIT_VELOCITY_MIN = -1.;
const double INIT_VELOCITY_MAX = 1.;
const double C1 = 0.5;
const double C2 = 2.;
const double C3 = 2.;
const unsigned int MIG_FREQ = 10;
rng.reseed (time(0));
RingTopology topologyMig;
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoParaPopEval< Indi > eval(plainEval);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random (VEC_SIZE, uGen);
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
eoFirstIsBestInit < Indi > localInit;
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
eoPop < Indi > pop;
pop.append (POP_SIZE, random);
peoInitializer <Indi> init(eval,veloRandom,localInit,pop);
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,C1,C2,bnds);
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCheckPoint<Indi> checkpoint(genContPara);
eoPeriodicContinue< Indi > mig_cont( MIG_FREQ );
peoPSOSelect<Indi> mig_selec(topology);
eoSelectNumber< Indi > mig_select(mig_selec);
peoPSOReplacement<Indi> mig_replace;
peoEvalFunc<Indi, double, const Indi& > plainEval2(f);
peoParaPopEval< Indi > eval2(plainEval2);
eoUniformGenerator < double >uGen2 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random2 (VEC_SIZE, uGen2);
eoUniformGenerator < double >sGen2 (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom2 (VEC_SIZE, sGen2);
eoFirstIsBestInit < Indi > localInit2;
eoRealVectorBounds bndsFlight2(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight2(bndsFlight2);
eoPop < Indi > pop2;
pop2.append (POP_SIZE, random2);
peoInitializer <Indi> init2(eval2,veloRandom2,localInit2,pop2);
eoLinearTopology<Indi> topology2(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds2(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity2 (topology2,C1,C2,bnds2);
eoGenContinue < Indi > genContPara2 (MAX_GEN);
eoCheckPoint<Indi> checkpoint2(genContPara2);
eoPeriodicContinue< Indi > mig_cont2( MIG_FREQ );
peoPSOSelect<Indi> mig_selec2(topology2);
eoSelectNumber< Indi > mig_select2(mig_selec2);
peoPSOReplacement<Indi> mig_replace2;
peoEvalFunc<Indi, double, const Indi& > plainEval3(f);
peoParaPopEval< Indi > eval3(plainEval3);
eoUniformGenerator < double >uGen3 (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoInitFixedLength < Indi > random3 (VEC_SIZE, uGen3);
eoUniformGenerator < double >sGen3 (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom3 (VEC_SIZE, sGen3);
eoFirstIsBestInit < Indi > localInit3;
eoRealVectorBounds bndsFlight3(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight3(bndsFlight3);
eoPop < Indi > pop3;
pop3.append (POP_SIZE, random3);
peoInitializer <Indi> init3(eval3,veloRandom3,localInit3,pop3);
eoLinearTopology<Indi> topology3(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds3(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity3 (topology3,C1,C2,bnds3);
eoGenContinue < Indi > genContPara3 (MAX_GEN);
eoCheckPoint<Indi> checkpoint3(genContPara3);
eoPeriodicContinue< Indi > mig_cont3( MIG_FREQ );
peoPSOSelect<Indi> mig_selec3(topology3);
eoSelectNumber< Indi > mig_select3(mig_selec3);
peoPSOReplacement<Indi> mig_replace3;
peoAsyncIslandMig< Indi > mig( mig_cont, mig_select, mig_replace, topologyMig, pop, pop2);
checkpoint.add( mig );
peoAsyncIslandMig< Indi > mig2( mig_cont2, mig_select2, mig_replace2, topologyMig, pop2, pop3);
checkpoint2.add( mig2 );
peoAsyncIslandMig< Indi > mig3( mig_cont3, mig_select3, mig_replace3, topologyMig, pop3, pop);
checkpoint3.add( mig3 );
peoPSO < Indi > psa(init,checkpoint, eval, velocity, flight);
mig.setOwner( psa );
psa(pop);
peoPSO < Indi > psa2(init2,checkpoint2, eval2, velocity2, flight2);
mig2.setOwner( psa2 );
psa2(pop2);
peoPSO < Indi > psa3(init3,checkpoint3, eval3, velocity3, flight3);
mig3.setOwner( psa3 );
psa3(pop3);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
std::cout << "Population 1 :\n" << pop << std::endl;
std::cout << "Population 2 :\n" << pop2 << std::endl;
std::cout << "Population 3 :\n" << pop3 << std::endl;
}
}

2
trunk/paradiseo-peo/tutorial/Lesson4/param
View file

@ -6,4 +6,6 @@
--schema=schema.xml
## parameters
--inst=../examples/tsp/benchs/eil101.tsp

2
trunk/paradiseo-peo/tutorial/Lesson4/schema.xml
View file

@ -7,8 +7,6 @@
<node name="1" num_workers="0">
<runner>1</runner>
<runner>2</runner>
<runner>3</runner>
</node>
<node name="2" num_workers="1">

21
trunk/paradiseo-peo/tutorial/Lesson5/CMakeLists.txt
View file

@ -21,13 +21,6 @@ ADD_CUSTOM_COMMAND(
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson5)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson5/Lesson5.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson5)
######################################################################################
@ -36,7 +29,7 @@ ADD_CUSTOM_COMMAND(
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src)
######################################################################################
@ -46,12 +39,12 @@ INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_D
######################################################################################
IF(NOT WIN32 OR CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib)
ENDIF(NOT WIN32 OR CYGWIN)
# especially for Visual Studio
IF(WIN32 AND NOT CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${TSP_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
@ -62,8 +55,8 @@ ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
# no matter what is the OS, hopefully
ADD_EXECUTABLE(example example.cpp)
ADD_DEPENDENCIES(example tsp peo rmc_mpi)
ADD_EXECUTABLE(pso main.cpp)
ADD_DEPENDENCIES(pso peo rmc_mpi)
######################################################################################
@ -74,7 +67,7 @@ ADD_DEPENDENCIES(example tsp peo rmc_mpi)
######################################################################################
SET(WALKTHROUGH_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(example PROPERTIES VERSION "${WALKTHROUGH_VERSION}")
SET_TARGET_PROPERTIES(pso PROPERTIES VERSION "${WALKTHROUGH_VERSION}")
######################################################################################
@ -83,7 +76,7 @@ SET_TARGET_PROPERTIES(example PROPERTIES VERSION "${WALKTHROUGH_VERSION}")
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(example ${XML2_LIBS} tsp peo rmc_mpi eo eoutils)
TARGET_LINK_LIBRARIES(pso ${XML2_LIBS} peo rmc_mpi eo eoutils)
######################################################################################

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126
trunk/paradiseo-peo/tutorial/Lesson5/main.cpp Normal file
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@ -0,0 +1,126 @@
/*
* <main.cpp>
* Copyright (C) DOLPHIN Project-Team, INRIA Futurs, 2006-2007
* (C) OPAC Team, INRIA, 2007
*
* Clive Canape
*
* This software is governed by the CeCILL license under French law and
* abiding by the rules of distribution of free software. You can use,
* modify and/ or redistribute the software under the terms of the CeCILL
* license as circulated by CEA, CNRS and INRIA at the following URL
* "http://www.cecill.info".
*
* As a counterpart to the access to the source code and rights to copy,
* modify and redistribute granted by the license, users are provided only
* with a limited warranty and the software's author, the holder of the
* economic rights, and the successive licensors have only limited liability.
*
* In this respect, the user's attention is drawn to the risks associated
* with loading, using, modifying and/or developing or reproducing the
* software by the user in light of its specific status of free software,
* that may mean that it is complicated to manipulate, and that also
* therefore means that it is reserved for developers and experienced
* professionals having in-depth computer knowledge. Users are therefore
* encouraged to load and test the software's suitability as regards their
* requirements in conditions enabling the security of their systems and/or
* data to be ensured and, more generally, to use and operate it in the
* same conditions as regards security.
* The fact that you are presently reading this means that you have had
* knowledge of the CeCILL license and that you accept its terms.
*
* ParadisEO WebSite : http://paradiseo.gforge.inria.fr
* Contact: paradiseo-help@lists.gforge.inria.fr
*
*/
#include <peo>
#include <es.h>
typedef eoRealParticle < double >Indi;
double f (const Indi & _indi)
{
double sum;
sum=_indi[1]-pow(_indi[0],2);
sum=100*pow(sum,2);
sum+=pow((1-_indi[0]),2);
return (-sum);
}
template <class EOT>
class eoResizerInit: public eoInit<EOT>
{
public:
typedef typename EOT::AtomType AtomType;
eoResizerInit(unsigned _size)
: size(_size){}
virtual void operator()(EOT& chrom)
{
chrom.resize(size);
chrom.invalidate();
}
private :
unsigned size;
};
int main( int __argc, char** __argv )
{
peo :: init( __argc, __argv );
const unsigned int VEC_SIZE = 2;
const unsigned int POP_SIZE = 20;
const unsigned int NEIGHBORHOOD_SIZE= 6;
const unsigned int MAX_GEN = 300;
const double INIT_POSITION_MIN = -2.0;
const double INIT_POSITION_MAX = 2.0;
const double INIT_VELOCITY_MIN = -1.;
const double INIT_VELOCITY_MAX = 1.;
const double omega = 1;
const double C1 = 0.5;
const double C2 = 2.;
rng.reseed (time(0));
eoGenContinue < Indi > genContPara (MAX_GEN);
eoCombinedContinue <Indi> continuatorPara (genContPara);
eoCheckPoint<Indi> checkpoint(continuatorPara);
eoUniformGenerator < double >uGen (INIT_POSITION_MIN, INIT_POSITION_MAX);
eoUniformGenerator < double >sGen (INIT_VELOCITY_MIN, INIT_VELOCITY_MAX);
eoVelocityInitFixedLength < Indi > veloRandom (VEC_SIZE, sGen);
eoFirstIsBestInit < Indi > localInit;
eoRealVectorBounds bndsFlight(VEC_SIZE,INIT_POSITION_MIN,INIT_POSITION_MAX);
eoStandardFlight < Indi > flight(bndsFlight);
eoLinearTopology<Indi> topology(NEIGHBORHOOD_SIZE);
eoRealVectorBounds bnds(VEC_SIZE,INIT_VELOCITY_MIN,INIT_VELOCITY_MAX);
eoStandardVelocity < Indi > velocity (topology,omega,C1,C2,bnds);
eoResizerInit<Indi> sizeInit(VEC_SIZE);
// need at least a size initialization
eoPop < Indi > pop(POP_SIZE,sizeInit);
eoInitFixedLength < Indi > randomSeq (VEC_SIZE, uGen);
peoMultiStart <Indi> initRandom (randomSeq);
peoWrapper random (initRandom,pop);
initRandom.setOwner(random);
peo :: run( );
peo :: finalize( );
// Parallel algorithm
peo :: init (__argc, __argv);
peoEvalFunc<Indi, double, const Indi& > plainEval(f);
peoPopEval< Indi > eval(plainEval);
eoInitializer <Indi> init(eval,veloRandom,localInit,topology,pop);
eoSyncEasyPSO <Indi> psa(init,checkpoint,eval, velocity, flight);
peoWrapper parallelPSO( psa, pop);
eval.setOwner(parallelPSO);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

6
trunk/paradiseo-peo/tutorial/Lesson5/param
View file

@ -5,9 +5,3 @@
## deployment schema
--schema=schema.xml
## parameters
--inst=../examples/tsp/benchs/eil101.tsp

41
trunk/paradiseo-peo/tutorial/Lesson6/CMakeLists.txt
View file

@ -4,9 +4,17 @@
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
SET(MAKE_SRC_DIR "${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/make" CACHE PATH "Make source directory" FORCE)
ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/schema.xml)
ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/FlowShopEA.param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/schema.xml)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/FlowShopEA.param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson6)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
@ -21,13 +29,7 @@ ADD_CUSTOM_COMMAND(
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson6)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson6/Lesson6.pdf
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson6)
######################################################################################
@ -35,7 +37,7 @@ ADD_CUSTOM_COMMAND(
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${FLOWSHOP_SRC_DIR} ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR} ${MAKE_SRC_DIR})
######################################################################################
@ -45,13 +47,10 @@ INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_D
######################################################################################
IF(NOT WIN32 OR CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${MOEO_BIN_DIR}/lib ${FLOWSHOP_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
ENDIF(NOT WIN32 OR CYGWIN)
# especially for Visual Studio
IF(WIN32 AND NOT CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${ParadisEO-PEO_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE} ${TSP_BINARY_DIR}\\lib\\${CMAKE_BUILD_TYPE})
ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
@ -61,7 +60,8 @@ ENDIF(WIN32 AND NOT CYGWIN)
######################################################################################
ADD_EXECUTABLE(example main.cpp)
ADD_DEPENDENCIES(example tsp peo rmc_mpi)
ADD_DEPENDENCIES(example flowshop moeo peo rmc_mpi)
######################################################################################
@ -70,22 +70,13 @@ ADD_DEPENDENCIES(example tsp peo rmc_mpi)
### 4) Optionnal: define your target(s)'s version: no effect for windows
######################################################################################
SET(LESSON6_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(example PROPERTIES VERSION "${LESSON6_VERSION}")
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(example ${XML2_LIBS} tsp peo rmc_mpi eo eoutils)
TARGET_LINK_LIBRARIES(example ${XML2_LIBS} flowshop moeo peo rmc_mpi eo eoutils)
######################################################################################

0
trunk/paradiseo-peo/tutorial/Lesson7/FlowShopEA.param → trunk/paradiseo-peo/tutorial/Lesson6/FlowShopEA.param
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88
trunk/paradiseo-peo/tutorial/Lesson6/main.cpp
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@ -34,72 +34,34 @@
*
*/
#include <peo>
// Specific libraries (TSP)
#include <param.h>
#include <route.h>
#include <route_eval.h>
#include <route_init.h>
#include <two_opt.h>
#include <two_opt_init.h>
#include <two_opt_next.h>
#include <two_opt_incr_eval.h>
#include <moeo>
#include <make_library.h>
#include <FlowShop.h>
int main( int __argc, char** __argv )
int main(int argc, char* argv[])
{
/* In this lesson you will learn to use a multi-start.
*
* Thanks to this method, you can use several local searches together !!!
*
*/
// Parameter
const unsigned int POP_SIZE = 10;
srand( time(NULL) );
// Initializing the ParadisEO-PEO environment
peo :: init( __argc, __argv );
// Processing the command line specified parameters
loadParameters( __argc, __argv );
// Define a Hill Climbing (you can choose an other local search)
// ie Lessons of ParadisEO - MO
Route route;
RouteInit init;
init(route);
RouteEval eval;
eval(route);
TwoOptInit initHC;
TwoOptNext nextHC;
TwoOptIncrEval incrHC;
moBestImprSelect< TwoOpt > selectHC;
moHC< TwoOpt > hc(initHC, nextHC, incrHC, selectHC, eval);
// Define a population
RouteInit initPop; // Creates random Route objects
RouteEval evalPop; // Offers a fitness value for a specified Route object
eoPop < Route > pop(POP_SIZE, initPop);
for ( unsigned int index = 0; index < POP_SIZE; index++ )
evalPop( pop[ index ] );
// Setting up the parallel wrapper
peoSynchronousMultiStart< Route > parallelHC(hc);
peoParallelAlgorithmWrapper WrapHC (parallelHC, pop);
parallelHC.setOwner( WrapHC );
peo :: run( );
peo :: finalize( );
if ( getNodeRank() == 1 )
{
std :: cout << "\n\nBefore : \n" << route;
std :: cout << "\n\nWith the synchronous Multi-Start HCs:";
for ( unsigned int index = 0; index < POP_SIZE; index++ )
std::cout <<"\n"<< pop[ index ];
}
peo :: init( argc,argv );
eoParser parser(argc, argv);
eoState state;
peoMoeoPopEval<FlowShop>& eval = do_make_para_eval(parser, state);
eoInit<FlowShop>& init = do_make_genotype(parser, state);
eoGenOp<FlowShop>& op = do_make_op(parser, state);
eoPop<FlowShop>& pop = do_make_pop(parser, state, init);
moeoArchive<FlowShop> arch;
eoContinue<FlowShop>& term = do_make_continue_moeo(parser, state, eval);
eoCheckPoint<FlowShop>& checkpoint = do_make_checkpoint_moeo(parser, state, eval, term, pop, arch);
eoAlgo<FlowShop>& algo = do_make_ea_moeo(parser, state, eval, checkpoint, op, arch);
peoWrapper parallelMOEO( algo, pop);
eval.setOwner(parallelMOEO);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
{
pop.sort();
std::cout << "Final population :\n" << pop << std::endl;
}
}

0
trunk/paradiseo-peo/tutorial/Lesson7/make_checkpoint_moeo.h → trunk/paradiseo-peo/tutorial/Lesson6/make/make_checkpoint_moeo.h
View file

0
trunk/paradiseo-peo/tutorial/Lesson7/make_continue_moeo.h → trunk/paradiseo-peo/tutorial/Lesson6/make/make_continue_moeo.h
View file

0
trunk/paradiseo-peo/tutorial/Lesson7/make_ea_moeo.h → trunk/paradiseo-peo/tutorial/Lesson6/make/make_ea_moeo.h
View file

8
trunk/paradiseo-peo/tutorial/Lesson6/make/make_library.h Normal file
View file

@ -0,0 +1,8 @@
#include <make_eval_FlowShop.h>
#include <make_genotype_FlowShop.h>
#include <make_op_FlowShop.h>
#include <do/make_pop.h>
#include <make_continue_moeo.h>
#include <make_checkpoint_moeo.h>
#include <make_ea_moeo.h>
#include <make_para_eval.h>

0
trunk/paradiseo-peo/tutorial/Lesson7/make_para_eval.h → trunk/paradiseo-peo/tutorial/Lesson6/make/make_para_eval.h
View file

4
trunk/paradiseo-peo/tutorial/Lesson6/schema.xml
View file

@ -6,10 +6,6 @@
</node>
<node name="1" num_workers="0">
<runner>1</runner>
<runner>2</runner>
<runner>3</runner>
<runner>4</runner>
<runner>5</runner>
</node>
<node name="2" num_workers="1">
</node>

81
trunk/paradiseo-peo/tutorial/Lesson7/CMakeLists.txt
View file

@ -1,81 +0,0 @@
######################################################################################
### 0) Set the compiler and define targets to easily run the lessons
######################################################################################
SET (CMAKE_CXX_COMPILER mpicxx)
ADD_CUSTOM_TARGET(install DEPENDS ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson7/param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson7/FlowShopEA.param ${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson7/schema.xml)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson7/FlowShopEA.param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson7)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson7/param
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson7)
ADD_CUSTOM_COMMAND(
TARGET install
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different
${ParadisEO-PEO_SOURCE_DIR}/tutorial/Lesson7/schema.xml
${ParadisEO-PEO_BINARY_DIR}/tutorial/Lesson7)
######################################################################################
######################################################################################
### 1) Include the sources
######################################################################################
INCLUDE_DIRECTORIES(${EO_SRC_DIR}/src ${MOEO_SRC_DIR}/src ${FLOWSHOP_SRC_DIR} ${MO_SRC_DIR}/src ${ParadisEO-PEO_SOURCE_DIR}/src ${TSP_SRC_DIR})
######################################################################################
######################################################################################
### 2) Specify where CMake can find the libraries (mandatory: before 3) )
######################################################################################
IF(NOT WIN32 OR CYGWIN)
LINK_DIRECTORIES(${EO_BIN_DIR}/lib ${MOEO_BIN_DIR}/lib ${FLOWSHOP_BIN_DIR}/lib ${ParadisEO-PEO_BINARY_DIR}/lib ${TSP_BINARY_DIR}/lib)
ENDIF(NOT WIN32 OR CYGWIN)
######################################################################################
######################################################################################
### 3) Define your target(s): just an executable here
######################################################################################
ADD_EXECUTABLE(example main.cpp)
ADD_DEPENDENCIES(example flowshop moeo peo rmc_mpi)
######################################################################################
######################################################################################
### 4) Optionnal: define your target(s)'s version: no effect for windows
######################################################################################
######################################################################################
######################################################################################
### 5) Link the librairies
######################################################################################
TARGET_LINK_LIBRARIES(example ${XML2_LIBS} flowshop moeo peo rmc_mpi eo eoutils)
######################################################################################

35
trunk/paradiseo-peo/tutorial/Lesson7/main.cpp
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@ -1,35 +0,0 @@
#include <peo>
#include <moeo>
#include <make_eval_FlowShop.h>
#include <make_genotype_FlowShop.h>
#include <make_op_FlowShop.h>
#include <do/make_pop.h>
#include <../tutorial/Lesson7/make_continue_moeo.h>
#include <../tutorial/Lesson7/make_checkpoint_moeo.h>
#include <../tutorial/Lesson7/make_ea_moeo.h>
#include <../tutorial/Lesson7/make_para_eval.h>
#include <FlowShop.h>
int main(int argc, char* argv[])
{
peo :: init( argc,argv );
eoParser parser(argc, argv);
eoState state;
peoMoeoPopEval<FlowShop>& eval = do_make_para_eval(parser, state);
eoInit<FlowShop>& init = do_make_genotype(parser, state);
eoGenOp<FlowShop>& op = do_make_op(parser, state);
eoPop<FlowShop>& pop = do_make_pop(parser, state, init);
moeoArchive<FlowShop> arch;
eoContinue<FlowShop>& term = do_make_continue_moeo(parser, state, eval);
eoCheckPoint<FlowShop>& checkpoint = do_make_checkpoint_moeo(parser, state, eval, term, pop, arch);
eoAlgo<FlowShop>& algo = do_make_ea_moeo(parser, state, eval, checkpoint, op, arch);
peoWrapper parallelMOEO( algo, pop);
eval.setOwner(parallelMOEO);
peo :: run();
peo :: finalize();
if (getNodeRank()==1)
std::cout << "Final population :\n" << pop << std::endl;
}

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trunk/paradiseo-peo/tutorial/Lesson7/param
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@ -1,12 +0,0 @@
## miscallenous parameters
--debug=false
## deployment schema
--schema=schema.xml
## parameters
--inst=../examples/tsp/benchs/eil101.tsp

15
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<?xml version="1.0"?>
<schema>
<group scheduler="0">
<node name="0" num_workers="0">
</node>
<node name="1" num_workers="0">
<runner>1</runner>
</node>
<node name="2" num_workers="1">
</node>
<node name="3" num_workers="1">
</node>
</group>
</schema>