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# t-eoFitnessAssembledEA.cpp

    00001 // -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
    00002
    00003 //-----------------------------------------------------------------------------
    00004 // t-eoFitnessAssembledEA.cpp
    00005 // Marc Wintermantel & Oliver Koenig
    00006 // IMES-ST@ETHZ.CH
    00007 // March 2003
    00008
    00009 /*
    00010     This library is free software; you can redistribute it and/or
    00011     modify it under the terms of the GNU Lesser General Public
    00012     License as published by the Free Software Foundation; either
    00013     version 2 of the License, or (at your option) any later version.
    00014
    00015     This library is distributed in the hope that it will be useful,
    00016     but WITHOUT ANY WARRANTY; without even the implied warranty of
    00017     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
    00018     Lesser General Public License for more details.
    00019
    00020     You should have received a copy of the GNU Lesser General Public
    00021     License along with this library; if not, write to the Free Software
    00022     Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
    00023
    00024     Contact: todos@geneura.ugr.es, http://geneura.ugr.es
    00025              Marc.Schoenauer@inria.fr
    00026              mak@dhi.dk
    00027 */
    00028 //-----------------------------------------------------------------------------
    00029 #ifdef HAVE_CONFIG_H
    00030 #include <config.h>
    00031 #endif
    00032
    00033 #include <iostream>
    00034 #include <cmath>
    00035
    00036 // General eo includes
    00037 #include <eo>
    00038 #include <utils/eoRealVectorBounds.h>   // The real bounds (not yet in general eo include)
    00039
    00040 // Representation dependent includes and typedefs
    00041 #include <es/eoReal.h>                  // Definition of representation
    00042 #include <es/eoRealInitBounded.h>       // Uniformly initializes real vector in bounds
    00043 #include <es/make_genotype_real.h>              // Initialization of a genotype
    00044 #include <eoEvalFunc.h>                 // Base class for fitness evaluation
    00045 #include <es/make_op_real.h>            // Variation operators using standard Real operators
    00046 #include <eoScalarFitnessAssembled.h>     // The fitness class
    00047 typedef eoReal<eoAssembledMinimizingFitness> Indi;
    00048
    00049 // Representation independent modules
    00050 #include <do/make_pop.h>                // Initialization of population
    00051 #include <do/make_continue.h>           // The stopping criterion
    00052 #include <do/make_checkpoint_assembled.h>       // Outputs (stats, population dumps, ...)
    00053 #include <do/make_algo_scalar.h>        // Evolution engine (selection and replacement)
    00054 #include <do/make_run.h>                // simple call to the algo.stays there for consistency reasons
    00055
    00056 // Define a fitness class
    00057 template <class EOT>
    00058 class eoAssembledEvalFunc : public eoEvalFunc<EOT>{
    00059 public:
    00060   // Constructor defining number and descriptions of fitness terms
    00061   eoAssembledEvalFunc() {
    00062
    00063     // Define a temporary fitness object to have access to its static traits
    00064     typename EOT::Fitness tmpfit(3, 0.0);
    00065     tmpfit.setDescription(0,"Fitness");
    00066     tmpfit.setDescription(1,"Some Value");
    00067     tmpfit.setDescription(2,"Other Value");
    00068
    00069   }
    00070
    00071   void operator()(EOT& _eo){
    00072
    00073     // Define temporary fitness object
    00074     // (automatically gets initialized with size given in constructor)
    00075     typename EOT::Fitness tmpfit;
    00076
    00077     // Eval some dummy fitness
    00078     double sum1=0.0, sum2=0.0;
    00079     for (unsigned i=0; i < _eo.size(); ++i){
    00080       sum1 += _eo[i]*_eo[i];
    00081       sum2 += fabs(_eo[i]) + fabs(_eo[i]);
    00082     }
    00083
    00084     // Store some fitness terms
    00085     tmpfit[1]= sum1;
    00086     tmpfit[2]= sum2;
    00087
    00088     // Store the fitness
    00089     tmpfit = (sum1 + sum2)/_eo.size();
    00090
    00091     // Pass it
    00092     _eo.fitness( tmpfit );
    00093
    00094   }
    00095 };
    00096
    00097 // checks for help demand, and writes the status file and make_help; in libutils
    00098 void make_help(eoParser & _parser);
    00099
    00100 // now use all of the above, + representation dependent things
    00101 int main(int argc, char* argv[]){
    00102
    00103   std::cout << "-----------------------------------" << std::endl;
    00104   std::cout << "START t-eoFitnessAssembledEA" << std::endl;
    00105
    00106   try{
    00107
    00108     // Parser & State
    00109     eoParser parser(argc, argv);  // for user-parameter reading
    00110     eoState state;    // keeps all things allocated
    00111
    00113     // A) Representation dependent stuff
    00115
    00116     // The fitness
    00117     eoAssembledEvalFunc<Indi> plainEval;
    00118     // turn that object into an evaluation counter
    00119     eoEvalFuncCounter<Indi> eval(plainEval);
    00120
    00121     // The genotype
    00122     eoRealInitBounded<Indi>& init = do_make_genotype(parser, state, Indi() );
    00123
    00124     // The variation operators
    00125     eoGenOp<Indi>& op = do_make_op(parser, state, init);
    00126
    00128     // B) Create representation independent stuff
    00130
    00131     // initialize the population
    00132     // yes, this is representation indepedent once you have an eoInit
    00133     eoPop<Indi>& pop   = do_make_pop(parser, state, init);
    00134
    00135     // stopping criteria
    00136     eoContinue<Indi> & term = do_make_continue(parser, state, eval);
    00137     // output
    00138     eoCheckPoint<Indi> & checkpoint = do_make_checkpoint_assembled(parser, state, eval, term);
    00139     // algorithm (need the operator!)
    00140     eoAlgo<Indi>& ga = do_make_algo_scalar(parser, state, eval, checkpoint, op);
    00141
    00142
    00143     make_help(parser);  // To be called after all parameters have been read !
    00144
    00146     // C) Run the algorithm
    00148
    00149     // evaluate intial population AFTER help and status in case it takes time
    00150     apply<Indi>(eval, pop);
    00151     // if you want to print it out
    00152     std::cout << "Initial Population\n";
    00153     pop.sortedPrintOn(std::cout);
    00154     std::cout << std::endl;
    00155
    00156     do_run(ga, pop); // run the ga
    00157
    00158     std::cout << "Final Population\n";
    00159     pop.sortedPrintOn(std::cout);
    00160     std::cout << std::endl;
    00161
    00162   }
    00163   catch(std::exception& e)
    00164     {
    00165       std::cout << e.what() << std::endl;
    00166       return 1;
    00167     }
    00168
    00169   std::cout << "-----------------------------------" << std::endl;
    00170   std::cout << "END t-eoFitnessAssembledEA" << std::endl;
    00171
    00172   return 0;
    00173
    00174 }