// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- //----------------------------------------------------------------------------- // eoPop.h // (c) GeNeura Team, 1998 /* This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Contact: todos@geneura.ugr.es, http://geneura.ugr.es */ //----------------------------------------------------------------------------- #ifndef _EOPOP_H #define _EOPOP_H #include #include #include // EO includes #include // for eoInit #include #include #include // for shuffle method /** Subpopulation: it is used to move parts of population from one algorithm to another and one population to another. It is safer to declare it as a separate object. I have no idea if a population can be some other thing that a vector, but if somebody thinks of it, this concrete implementation will be moved to "generic" and an abstract Population interface will be provided. It can be instantiated with anything, provided that it accepts a "size" and a random generator in the ctor. This happens to all the eo1d chromosomes declared so far. EOT must also have a copy ctor, since temporaries are created and copied to the population. It can also be instantiated with a "size" and an eoInit derived object. This object must supply a full chromosome (or something the ctor of the EO will accept). @author Geneura Team @version 0.0 */ template class eoPop: public vector, public eoObject, public eoPersistent { public: typedef typename EOT::Fitness Fitness; /** Default ctor. Creates empty pop */ eoPop() : vector(), eoObject(), eoPersistent() {}; /** Ctor for the initialization of chromosomes @param _popSize total population size @param _chromInit Initialization routine, produces EO's, needs to be an eoInit */ eoPop( unsigned _popSize, eoInit& _chromInit ) :vector() { resize(_popSize); for ( unsigned i = 0; i < _popSize; i++ ) { _chromInit(operator[](i)); } }; /** appends random guys at end of pop. Can be used to initialize it pop is empty @param _popSize total population size @param _chromInit Initialization routine, produces EO's, needs to be an eoInit */ void append( unsigned _newPopSize, eoInit& _chromInit ) { unsigned oldSize = size(); if (_newPopSize < oldSize) { throw runtime_error("New size smaller than old size in pop.append"); return; } if (_newPopSize == oldSize) return; resize(_newPopSize); // adjust the size for ( unsigned i = oldSize; i < _newPopSize; i++ ) { _chromInit(operator[](i)); } }; /** Ctor from an istream; reads the population from a stream, each element should be in different lines @param _is the stream */ eoPop( istream& _is ):vector() { readFrom( _is ); } /// ~eoPop() {}; /// helper struct for getting a pointer struct Ref { const EOT* operator()(const EOT& eot) { return &eot;}}; /// helper struct for comparing on pointers struct Cmp { bool operator()(const EOT* a, const EOT* b) const { return b->operator<(*a); } }; /** sort the population. Use this member to sort in order of descending Fitness, so the first individual is the best! */ void sort(void) { std::sort(begin(), end(), greater()); } // creates a vector pointing to the individuals in descending order void sort(vector& result) const { result.resize(size()); std::transform(begin(), end(), result.begin(), Ref()); std::sort(result.begin(), result.end(), Cmp()); } /** shuffle the population. Use this member to put the population in random order */ void shuffle(void) { UF_random_generator gen; std::random_shuffle(begin(), end(), gen); } // creates a vector pointing to the individuals in random order void shuffle(vector& result) const { result.resize(size()); std::transform(begin(), end(), result.begin(), Ref()); UF_random_generator gen; std::random_shuffle(result.begin(), result.end(), gen); } // returns an iterator to the best individual DOES NOT MOVE ANYBODY eoPop::iterator it_best_element() { typename eoPop::const_iterator it = max_element(begin(), end()); return it; } // returns an iterator to the best individual DOES NOT MOVE ANYBODY const EOT & best_element() const { typename eoPop::const_iterator it = max_element(begin(), end()); return (*it); } // returns a const reference to the worse individual DOES NOT MOVE ANYBODY const EOT & worse_element() const { typename eoPop::const_iterator it = min_element(begin(), end()); return (*it); } // returns an iterator to the worse individual DOES NOT MOVE ANYBODY eoPop::iterator it_worse_element() { typename eoPop::iterator it = min_element(begin(), end()); return it; } /** slightly faster algorithm than sort to find all individuals that are better than the nth individual. INDIVIDUALS ARE MOVED AROUND in the pop. */ eoPop::iterator nth_element(int nth) { typename eoPop::iterator it = begin() + nth; std::nth_element(begin(), it, end(), greater()); return it; } struct GetFitness { Fitness operator()(const EOT& _eo) const { return _eo.fitness(); } }; Fitness nth_element_fitness(int which) const { // probably not the fastest way to do this, but what the heck vector fitness(size()); std::transform(begin(), end(), fitness.begin(), GetFitness()); vector::iterator it = fitness.begin() + which; std::nth_element(fitness.begin(), it, fitness.end(), greater()); return *it; } /// const nth_element function, returns pointers to sorted individuals void nth_element(int which, vector& result) const { result.resize(size()); std::transform(begin(), end(), result.begin(), Ref()); vector::iterator it = result.begin() + which; std::nth_element(result.begin(), it, result.end(), Cmp()); } // does STL swap with other pop void swap(eoPop& other) { std::swap(static_cast& >(*this), static_cast& >(other)); } /** * Prints sorted pop but does NOT modify it! * * @param _os A ostream. */ virtual void sortedPrintOn(ostream& _os) const { vector result; sort(result); _os << size() << '\n'; for (unsigned i = 0; i < size(); ++i) { _os << *result[i] << endl; } } /** * Write object. It's called printOn since it prints the object _on_ a stream. * @param _os A ostream. */ virtual void printOn(ostream& _os) const { _os << size() << '\n'; copy( begin(), end(), ostream_iterator( _os, "\n") ); } /** @name Methods from eoObject */ //@{ /** * Read object. The EOT class must have a ctor from a stream; in this case, a strstream is used. * @param _is A istream. */ virtual void readFrom(istream& _is) { size_t sz; _is >> sz; resize(sz); for (size_t i = 0; i < sz; ++i) { operator[](i).readFrom( _is ); } } /** Inherited from eoObject. Returns the class name. @see eoObject */ virtual string className() const {return "eoPop";}; //@} protected: }; #endif