fix most of the doxygen warnings

eo/src/utils/eoFileMonitor.h

@@ -55,6 +55,7 @@ public :
      * @param _delim delimiter string to use between each item of the registered vector (e.g. of eoStats)
      * @param _keep_existing if true, overwrite any existing file with the same name prior to any output
      * @param _header print the header (with the descriptions of registered eoStats) at the beginning of the file (WARNING: true will discards header printing)
+     * @param _overwrite if true, overwrite the existing file
      */
     eoFileMonitor(
         std::string _filename, 

eo/src/utils/eoGnuplot.h

@@ -44,7 +44,7 @@ public:
     /** Open pipe to Gnuplot.
 
     @param _title Title for gnuplot window.
-    @param _extra Extra parameters to gnuplot (default <none>).
+    @param _extra Extra parameters to gnuplot (default to none: "").
     */
     eoGnuplot(std::string _title, std::string _extra = std::string(""));
 

eo/src/utils/eoHowMany.h

@@ -77,7 +77,7 @@ class eoHowMany : public eoPersistent
 {
 public:
   /** Original Ctor from direct rate + bool
-      @param rate    the rate, OR the integer to store, depending on 2nd arg.
+      @param _rate    the rate, OR the integer to store, depending on 2nd arg.
       @param _interpret_as_rate to tell whether the rate actually is a rate
   */
   eoHowMany(double  _rate = 0.0, bool _interpret_as_rate = true):

eo/src/utils/eoParser.h

@@ -64,7 +64,7 @@ public :
      * @param _defaultValue       The default value
      * @param _longName           Long name of the argument
      * @param _description        Description of the parameter. What is useful for.
-     * @param _shortName          Short name of the argument (Optional)
+     * @param _shortHand          Short name of the argument (Optional)
      * @param _section            Name of the section where the parameter belongs
      * @param _required           If it is a necessary parameter or not
      */
@@ -128,8 +128,14 @@ public:
   */
   void processParam(eoParam& param, std::string section = "");
 
+  /** Read from a stream
+   * @param is the input stream
+   */
   void readFrom(std::istream& is);
 
+  /** Pint on a stream
+   * @param os the output stream
+   */
   void printOn(std::ostream& os) const;
 
   /// className for readibility
@@ -207,7 +213,7 @@ public:
     @param _defaultValue Default value.
     @param _longName     Long name of the argument.
     @param _description  Description of the parameter.
-    @param _shortName    Short name of the argument (Optional)
+    @param _shortHand    Short name of the argument (Optional)
     @param _section      Name of the section where the parameter belongs.
     @param _required     Is the parameter mandatory?
     @return Corresponding parameter.

eo/src/utils/eoRealVectorBounds.h

@@ -305,7 +305,7 @@ public:
 
   /**
    * Read object from a std::string
-   * @param _is A std::istream.
+   * @param _s A std::istream.
    */
   virtual void readFrom(std::string _s) ;
 

eo/src/utils/eoTimeCounter.h

@@ -35,7 +35,7 @@
     An eoStat that simply gives the user time since first generation
     It has to be tempatized by EOT because it must be an eoStat
 
-    @group Stats
+    @ingroup Stats
 */
 class eoTimeCounter : public eoUpdater, public eoValueParam<double>
 {