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Corrected a problem in eoEsChromInit (it refused plain eoReal) + some

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other minor modications (e.g. a dir in make_checkpoint where ALL file
will go).
This commit is contained in:
evomarc 2001-05-03 17:20:27 +00:00
commit f4d2630516
9 changed files with 98 additions and 64 deletions
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33
eo/src/do/make_checkpoint.h
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@ -77,12 +77,15 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
// Best fitness in population
//---------------------------
eoValueParam<bool>& printBestParam = _parser.createParam(true, "printBestStat", "Print Best/avg/stdev every gen.", '\0', "Output");
eoValueParam<bool>& plotBestParam = _parser.createParam(false, "plotBestStat", "Plot Best/avg Stat", '\0', "Output");
eoValueParam<string>& bestFileNameParam = _parser.createParam(string("best.xg"), "BestFileName", "Name of file for Best/avg/stdev", '\0', "Output");
bool fileBestParam = _parser.isItThere(bestFileNameParam);
eoValueParam<bool>& plotBestParam = _parser.createParam(false, "plotBestStat", "Plot Best/avg Stat", '\0', "Output - Graphical");
// dir for DISK output
eoValueParam<string>& dirNameParam = _parser.createParam(string("Res"), "resDir", "Directory to store DISK outputs", '\0', "Output - Disk");
eoValueParam<bool>& fileBestParam = _parser.createParam(false, "fileBestStat", "Output bes/avg/std to file", '\0', "Output - Disk");
eoBestFitnessStat<EOT> *bestStat = NULL;
if ( printBestParam.value() || plotBestParam.value() || fileBestParam )
if ( printBestParam.value() || plotBestParam.value() || fileBestParam.value() )
// we need the bestStat for at least one of the 3 above
{
bestStat = new eoBestFitnessStat<EOT>;
@ -134,7 +137,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
// the Fitness Distance Correlation
//---------------------------------
eoValueParam<bool>& printFDCParam = _parser.createParam(true, "printFDC", "Print FDC coeff. every gen.", '\0', "Output");
eoValueParam<bool>& plotFDCParam = _parser.createParam(false, "plotFDCStat", "Plot FDC scatter plot", '\0', "Output");
eoValueParam<bool>& plotFDCParam = _parser.createParam(false, "plotFDCStat", "Plot FDC scatter plot", '\0', "Output - Graphical");
eoFDCStat<EOT> *fdcStat = NULL;
if ( printFDCParam.value() || plotFDCParam.value() ) // we need FDCStat
@ -180,9 +183,10 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
monitor->add(*popStat);
}
if (fileBestParam) // A file monitor for best & secondMoment
if (fileBestParam.value()) // A file monitor for best & secondMoment
{
eoFileMonitor *fileMonitor = new eoFileMonitor(bestFileNameParam.value());
string stmp = dirNameParam.value() + "/best.xg";
eoFileMonitor *fileMonitor = new eoFileMonitor(stmp);
// save and give to checkpoint
_state.storeFunctor(fileMonitor);
checkpoint->add(*fileMonitor);
@ -195,7 +199,8 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
if (plotBestParam.value()) // an eoGnuplot1DMonitor for best & average
{
eoGnuplot1DMonitor *gnuMonitor = new eoGnuplot1DMonitor("_gnu_best.xg",minimizing_fitness<EOT>());
string stmp = dirNameParam.value() + "_gnu_best.xg";
eoGnuplot1DMonitor *gnuMonitor = new eoGnuplot1DMonitor(stmp,minimizing_fitness<EOT>());
// save and give to checkpoint
_state.storeFunctor(gnuMonitor);
checkpoint->add(*gnuMonitor);
@ -211,7 +216,7 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
if (plotFDCParam.value()) // a specific plot monitor for FDC
{
// first into a file (it adds everything ti itself
eoFDCFileSnapshot<EOT> *fdcFileSnapshot = new eoFDCFileSnapshot<EOT>(*fdcStat);
eoFDCFileSnapshot<EOT> *fdcFileSnapshot = new eoFDCFileSnapshot<EOT>(*fdcStat, dirNameParam.value());
_state.storeFunctor(fdcFileSnapshot);
// then to a Gnuplot monitor
eoGnuplot1DSnapshot *fdcGnuplot = new eoGnuplot1DSnapshot(*fdcFileSnapshot);
@ -222,14 +227,14 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
checkpoint->add(*fdcGnuplot);
}
eoValueParam<bool> plotHistogramParam = _parser.createParam(false, "plotHisto", "Plot histogram of fitnesses", '\0', "Output");
eoValueParam<bool> plotHistogramParam = _parser.createParam(false, "plotHisto", "Plot histogram of fitnesses", '\0', "Output - Graphical");
if (plotHistogramParam.value()) // want to see how the fitness is spread?
{
eoScalarFitnessStat<EOT> *fitStat = new eoScalarFitnessStat<EOT>;
_state.storeFunctor(fitStat);
checkpoint->add(*fitStat);
// a gnuplot-based monitor for snapshots: needs a dir name
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot("Fitnesses");
eoGnuplot1DSnapshot *fitSnapshot = new eoGnuplot1DSnapshot(dirNameParam.value());
_state.storeFunctor(fitSnapshot);
// add any stat that is a vector<double> to it
fitSnapshot->add(*fitStat);
@ -248,7 +253,8 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
if (_parser.isItThere(saveFrequencyParam))
{
unsigned freq = (saveFrequencyParam.value()>0 ? saveFrequencyParam.value() : UINT_MAX );
eoCountedStateSaver *stateSaver1 = new eoCountedStateSaver(freq, _state, "generation");
string stmp = dirNameParam.value() + "/generations";
eoCountedStateSaver *stateSaver1 = new eoCountedStateSaver(freq, _state, stmp);
_state.storeFunctor(stateSaver1);
checkpoint->add(*stateSaver1);
}
@ -257,7 +263,8 @@ eoCheckPoint<EOT>& do_make_checkpoint(eoParameterLoader& _parser, eoState& _stat
eoValueParam<unsigned>& saveTimeIntervalParam = _parser.createParam(unsigned(0), "saveTimeInterval", "Save every T seconds (0 or absent = never)", '\0',"Persistence" );
if (_parser.isItThere(saveTimeIntervalParam) && saveTimeIntervalParam.value()>0)
{
eoTimedStateSaver *stateSaver2 = new eoTimedStateSaver(saveTimeIntervalParam.value(), _state, "time");
string stmp = dirNameParam.value() + "/time";
eoTimedStateSaver *stateSaver2 = new eoTimedStateSaver(saveTimeIntervalParam.value(), _state, stmp);
_state.storeFunctor(stateSaver2);
checkpoint->add(*stateSaver2);
}