diff --git a/eo/autogen.sh b/eo/autogen.sh index c5d876a2..b7b3997c 100755 --- a/eo/autogen.sh +++ b/eo/autogen.sh @@ -49,6 +49,7 @@ touch doc/eo.cfg echo echo "Now run 'configure' and 'make' to build $PROG." +echo "You can check the build running 'make check'" echo echo "If you have Doxygen installed, type 'make doc' to generate $PROG documentation." echo diff --git a/eo/configure.in b/eo/configure.in index 017ba9ce..d705abf9 100644 --- a/eo/configure.in +++ b/eo/configure.in @@ -8,10 +8,8 @@ AC_CONFIG_SRCDIR(src/eoOp.h) AM_INIT_AUTOMAKE AM_CONFIG_HEADER([config.h]) -dnl Checks for maintainer mode -AM_MAINTAINER_MODE - dnl Checks for programs. +AC_PROG_CC AC_PROG_CXX AC_PROG_INSTALL AC_PROG_LN_S diff --git a/eo/src/Makefile.am b/eo/src/Makefile.am index 6e41c85e..73f8fd31 100644 --- a/eo/src/Makefile.am +++ b/eo/src/Makefile.am @@ -4,11 +4,9 @@ ## ############################################################################### -INCLUDES = -I$(top_srcdir)/src +SUBDIRS = es ga gp utils other do -SUBDIRS = es ga gp utils other do - -CPPFLAGS = -O2 +AM_CXXFLAGS = -I$(top_srcdir)/src lib_LIBRARIES = libeo.a diff --git a/eo/src/eo b/eo/src/eo index 7850578f..5071dfa1 100644 --- a/eo/src/eo +++ b/eo/src/eo @@ -29,6 +29,9 @@ #define _eo_ //----------------------------------------------------------------------------- +#ifdef HAVE_CONFIG_H +#include +#endif // general purpose #include #include diff --git a/eo/test/LICENSE b/eo/test/LICENSE deleted file mode 100644 index 60549be5..00000000 --- a/eo/test/LICENSE +++ /dev/null @@ -1,340 +0,0 @@ - GNU GENERAL PUBLIC LICENSE - Version 2, June 1991 - - Copyright (C) 1989, 1991 Free Software Foundation, Inc. - 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - Everyone is permitted to copy and distribute verbatim copies - of this license document, but changing it is not allowed. - - Preamble - - The licenses for most software are designed to take away your -freedom to share and change it. By contrast, the GNU General Public -License is intended to guarantee your freedom to share and change free -software--to make sure the software is free for all its users. This -General Public License applies to most of the Free Software -Foundation's software and to any other program whose authors commit to -using it. (Some other Free Software Foundation software is covered by -the GNU Library General Public License instead.) You can apply it to -your programs, too. - - When we speak of free software, we are referring to freedom, not -price. Our General Public Licenses are designed to make sure that you -have the freedom to distribute copies of free software (and charge for -this service if you wish), that you receive source code or can get it -if you want it, that you can change the software or use pieces of it -in new free programs; and that you know you can do these things. - - To protect your rights, we need to make restrictions that forbid -anyone to deny you these rights or to ask you to surrender the rights. -These restrictions translate to certain responsibilities for you if you -distribute copies of the software, or if you modify it. - - For example, if you distribute copies of such a program, whether -gratis or for a fee, you must give the recipients all the rights that -you have. You must make sure that they, too, receive or can get the -source code. And you must show them these terms so they know their -rights. - - We protect your rights with two steps: (1) copyright the software, and -(2) offer you this license which gives you legal permission to copy, -distribute and/or modify the software. - - Also, for each author's protection and ours, we want to make certain -that everyone understands that there is no warranty for this free -software. If the software is modified by someone else and passed on, we -want its recipients to know that what they have is not the original, so -that any problems introduced by others will not reflect on the original -authors' reputations. - - Finally, any free program is threatened constantly by software -patents. We wish to avoid the danger that redistributors of a free -program will individually obtain patent licenses, in effect making the -program proprietary. To prevent this, we have made it clear that any -patent must be licensed for everyone's free use or not licensed at all. - - The precise terms and conditions for copying, distribution and -modification follow. - - GNU GENERAL PUBLIC LICENSE - TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION - - 0. This License applies to any program or other work which contains -a notice placed by the copyright holder saying it may be distributed -under the terms of this General Public License. The "Program", below, -refers to any such program or work, and a "work based on the Program" -means either the Program or any derivative work under copyright law: -that is to say, a work containing the Program or a portion of it, -either verbatim or with modifications and/or translated into another -language. (Hereinafter, translation is included without limitation in -the term "modification".) Each licensee is addressed as "you". - -Activities other than copying, distribution and modification are not -covered by this License; they are outside its scope. The act of -running the Program is not restricted, and the output from the Program -is covered only if its contents constitute a work based on the -Program (independent of having been made by running the Program). -Whether that is true depends on what the Program does. - - 1. You may copy and distribute verbatim copies of the Program's -source code as you receive it, in any medium, provided that you -conspicuously and appropriately publish on each copy an appropriate -copyright notice and disclaimer of warranty; keep intact all the -notices that refer to this License and to the absence of any warranty; -and give any other recipients of the Program a copy of this License -along with the Program. - -You may charge a fee for the physical act of transferring a copy, and -you may at your option offer warranty protection in exchange for a fee. - - 2. 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It is safest -to attach them to the start of each source file to most effectively -convey the exclusion of warranty; and each file should have at least -the "copyright" line and a pointer to where the full notice is found. - - - Copyright (C) 19yy - - This program is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - - You should have received a copy of the GNU General Public License - along with this program; if not, write to the Free Software - Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - - -Also add information on how to contact you by electronic and paper mail. - -If the program is interactive, make it output a short notice like this -when it starts in an interactive mode: - - Gnomovision version 69, Copyright (C) 19yy name of author - Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. - This is free software, and you are welcome to redistribute it - under certain conditions; type `show c' for details. - -The hypothetical commands `show w' and `show c' should show the appropriate -parts of the General Public License. Of course, the commands you use may -be called something other than `show w' and `show c'; they could even be -mouse-clicks or menu items--whatever suits your program. - -You should also get your employer (if you work as a programmer) or your -school, if any, to sign a "copyright disclaimer" for the program, if -necessary. Here is a sample; alter the names: - - Yoyodyne, Inc., hereby disclaims all copyright interest in the program - `Gnomovision' (which makes passes at compilers) written by James Hacker. - - , 1 April 1989 - Ty Coon, President of Vice - -This General Public License does not permit incorporating your program into -proprietary programs. If your program is a subroutine library, you may -consider it more useful to permit linking proprietary applications with the -library. If this is what you want to do, use the GNU Library General -Public License instead of this License. diff --git a/eo/test/Makefile.am b/eo/test/Makefile.am index 43b61b81..d766b42d 100644 --- a/eo/test/Makefile.am +++ b/eo/test/Makefile.am @@ -4,204 +4,61 @@ ## ############################################################################### -CLEANFILES = *~ *.sav *.status +LIBEO = $(top_builddir)/src/libeo.a +LIBEOUTILS = $(top_builddir)/src/utils/libeoutils.a +LIBES = $(top_builddir)/src/es/libes.a +LIBGA = $(top_builddir)/src/ga/libga.a + +AM_CXXFLAGS = -g -Wall -I$(top_srcdir)/src + +CLEANFILES = *~ *.sav *.status monitor.csv t-eoRandom.out + +DEPS = $(LIBGA) $(LIBES) $(LIBEO) $(LIBEOUTILS) + +LDADD = $(DEPS) -DEPS = $(top_builddir)/src/utils/libeoutils.a $(top_builddir)/src/libeo.a -############################################################################### -INCLUDES = -I$(top_builddir)/src -LDADDS = $(top_builddir)/src/utils/libeoutils.a $(top_builddir)/src/libeo.a -CXXFLAGS = -g -Wall -############################################################################### # PLEASE don't break the line (see create_batch.sh) check_PROGRAMS = t-eoParetoFitness t-eoPareto t-eofitness t-eoRandom t-eobin t-eoVirus t-MGE t-MGE1bit t-MGE-control t-eoStateAndParser t-eoCheckpointing t-eoSSGA t-eoExternalEO t-eoSymreg t-eo t-eoReplacement t-eoSelect t-eoGenOp t-eoGA t-eoReal t-eoVector t-eoESAll t-eoPBIL t-eoFitnessAssembled t-eoFitnessAssembledEA t-eoRoulette t-eoSharing -#The run_tests script can be used to check various arguments +noinst_headers = binary_value.h real_value.h + + +# The run_tests script can be used to check various arguments TESTS=$(check_PROGRAMS) run_tests -############################################################################### + +# Specify source-files, +# otherwise automake/make looks for C sources +# t_eoRandom_SOURCES = t-eoRandom.cpp -t_eoRandom_DEPENDENCIES = $(DEPS) -t_eoRandom_LDADD = $(LDADDS) - -############################################################################### - t_eofitness_SOURCES = t-eofitness.cpp -t_eofitness_DEPENDENCIES = $(DEPS) -t_eofitness_LDADD = $(LDADDS) - -############################################################################### - -t_eobin_SOURCES = t-eobin.cpp binary_value.h -t_eobin_DEPENDENCIES = $(DEPS) -t_eobin_LDADD = $(LDADDS) - -############################################################################### - -t_eoVirus_SOURCES = t-eoVirus.cpp binary_value.h -t_eoVirus_DEPENDENCIES = $(DEPS) -t_eoVirus_LDADD = $(LDADDS) - -############################################################################### - -t_MGE1bit_SOURCES = t-MGE1bit.cpp binary_value.h -t_MGE1bit_DEPENDENCIES = $(DEPS) -t_MGE1bit_LDADD = $(LDADDS) - -############################################################################### - -t_MGE_SOURCES = t-MGE.cpp binary_value.h -t_MGE_DEPENDENCIES = $(DEPS) -t_MGE_LDADD = $(LDADDS) - -############################################################################### - -t_MGE_control_SOURCES = t-MGE-control.cpp binary_value.h -t_MGE_control_DEPENDENCIES = $(DEPS) -t_MGE_control_LDADD = $(LDADDS) - -############################################################################### - -t_eoStateAndParser_SOURCES = t-eoStateAndParser.cpp -t_eoStateAndParser_DEPENDENCIES = $(DEPS) -t_eoStateAndParser_LDFLAGS = -lm -t_eoStateAndParser_LDADD = $(LDADDS) - -############################################################################### - -t_eoCheckpointing_SOURCES = t-eoCheckpointing.cpp -t_eoCheckpointing_DEPENDENCIES = $(DEPS) -t_eoCheckpointing_LDFLAGS = -lm -t_eoCheckpointing_LDADD = $(LDADDS) - -############################################################################### - -t_eoReplacement_SOURCES = t-eoReplacement.cpp -t_eoReplacement_DEPENDENCIES = $(DEPS) -t_eoReplacement_LDFLAGS = -lm -t_eoReplacement_LDADD = $(LDADDS) - -############################################################################### - -t_eoSelect_SOURCES = t-eoSelect.cpp -t_eoSelect_DEPENDENCIES = $(DEPS) -t_eoSelect_LDFLAGS = -lm -t_eoSelect_LDADD = $(LDADDS) - -############################################################################### - -t_eoExternalEO_SOURCES = t-eoExternalEO.cpp -t_eoExternalEO_DEPENDENCIES = $(DEPS) -t_eoExternalEO_LDFLAGS = -lm -t_eoExternalEO_LDADD = $(LDADDS) - -############################################################################### - -t_eoSymreg_SOURCES = t-eoSymreg.cpp -t_eoSymreg_DEPENDENCIES = $(DEPS) -t_eoSymreg_LDFLAGS = -lm -t_eoSymreg_LDADD = $(LDADDS) - -############################################################################### - -t_eo_SOURCES = t-eo.cpp -t_eo_DEPENDENCIES = $(DEPS) -t_eo_LDFLAGS = -lm -t_eo_LDADD = $(LDADDS) - -############################################################################### - -t_eoGenOp_SOURCES = t-eoGenOp.cpp -t_eoGenOp_DEPENDENCIES = $(DEPS) -t_eoGenOp_LDFLAGS = -lm -t_eoGenOp_LDADD = $(LDADDS) - -############################################################################### - -t_eoVector_SOURCES = t-eoVector.cpp -t_eoVector_DEPENDENCIES = $(DEPS) -t_eoVector_LDFLAGS = -lm -t_eoVector_LDADD = $(LDADDS) - -############################################################################### - -t_eoGA_SOURCES = t-eoGA.cpp binary_value.h -t_eoGA_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a -t_eoGA_LDFLAGS = -lm -t_eoGA_LDADD = $(top_builddir)/src/ga/libga.a $(LDADDS) - -############################################################################### - -t_eoReal_SOURCES = t-eoReal.cpp real_value.h -t_eoReal_DEPENDENCIES = $(DEPS) $(top_builddir)/src/es/libes.a -t_eoReal_LDFLAGS = -lm -t_eoReal_LDADD = $(top_builddir)/src/es/libes.a $(LDADDS) - -############################################################################### - -t_eoESAll_SOURCES = t-eoESAll.cpp real_value.h -t_eoESAll_DEPENDENCIES = $(DEPS) $(top_builddir)/src/es/libes.a -t_eoESAll_LDFLAGS = -lm -t_eoESAll_LDADD = $(top_builddir)/src/es/libes.a $(LDADDS) - -############################################################################### - -t_eoSSGA_SOURCES = t-eoSSGA.cpp binary_value.h -t_eoSSGA_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a -t_eoSSGA_LDFLAGS = -lm -t_eoSSGA_LDADD = $(LDADDS) - -############################################################################### - -t_eoPareto_SOURCES = t-eoPareto.cpp -t_eoPareto_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a -t_eoPareto_LDFLAGS = -lm -t_eoPareto_LDADD = $(LDADDS) - -############################################################################### - -t_eoParetoFitness_SOURCES = t-eoParetoFitness.cpp -t_eoParetoFitness_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a -t_eoParetoFitness_LDFLAGS = -lm -t_eoParetoFitness_LDADD = $(LDADDS) - -############################################################################### - -t_eoPBIL_SOURCES = t-eoPBIL.cpp -t_eoPBIL_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a -t_eoPBIL_LDFLAGS = -lm -t_eoPBIL_LDADD = $(top_builddir)/src/ga/libga.a $(LDADDS) - -############################################################################### - -t_eoFitnessAssembled_SOURCES = t-eoFitnessAssembled.cpp -t_eoFitnessAssembled_DEPENDENCIES = $(DEPS) $(top_builddir)/src/ga/libga.a -t_eoFitnessAssembled_LDFLAGS = -lm -t_eoFitnessAssembled_LDADD = $(top_builddir)/src/ga/libga.a $(LDADDS) - -############################################################################### - t_eoFitnessAssembledEA_SOURCES = t-eoFitnessAssembledEA.cpp -t_eoFitnessAssembledEA_DEPENDENCIES = $(DEPS) $(top_builddir)/src/es/libes.a -t_eoFitnessAssembledEA_LDFLAGS = -lm -t_eoFitnessAssembledEA_LDADD = $(top_builddir)/src/es/libes.a $(LDADDS) - -############################################################################### - +t_eobin_SOURCES = t-eobin.cpp binary_value.h +t_eoVirus_SOURCES = t-eoVirus.cpp binary_value.h +t_MGE1bit_SOURCES = t-MGE1bit.cpp binary_value.h +t_MGE_SOURCES = t-MGE.cpp binary_value.h +t_MGE_control_SOURCES = t-MGE-control.cpp binary_value.h +t_eoStateAndParser_SOURCES = t-eoStateAndParser.cpp +t_eoCheckpointing_SOURCES = t-eoCheckpointing.cpp +t_eoReplacement_SOURCES = t-eoReplacement.cpp +t_eoSelect_SOURCES = t-eoSelect.cpp +t_eoExternalEO_SOURCES = t-eoExternalEO.cpp +t_eoSymreg_SOURCES = t-eoSymreg.cpp +t_eo_SOURCES = t-eo.cpp +t_eoGenOp_SOURCES = t-eoGenOp.cpp +t_eoVector_SOURCES = t-eoVector.cpp +t_eoGA_SOURCES = t-eoGA.cpp binary_value.h +t_eoReal_SOURCES = t-eoReal.cpp real_value.h +t_eoESAll_SOURCES = t-eoESAll.cpp real_value.h +t_eoSSGA_SOURCES = t-eoSSGA.cpp binary_value.h +t_eoPareto_SOURCES = t-eoPareto.cpp +t_eoParetoFitness_SOURCES = t-eoParetoFitness.cpp +t_eoPBIL_SOURCES = t-eoPBIL.cpp +t_eoFitnessAssembled_SOURCES = t-eoFitnessAssembled.cpp t_eoRoulette_SOURCES = t-eoRoulette.cpp -t_eoRoulette_DEPENDENCIES = $(DEPS) -t_eoRoulette_LDFLAGS = -lm -t_eoRoulette_LDADD = $(LDADDS) - -############################################################################### - t_eoSharing_SOURCES = t-eoSharing.cpp -t_eoSharing_DEPENDENCIES = $(DEPS) -t_eoSharing_LDFLAGS = -lm -t_eoSharing_LDADD = $(LDADDS) - -############################################################################### diff --git a/eo/test/t-eoFitnessAssembledEA.cpp b/eo/test/t-eoFitnessAssembledEA.cpp index f21e31be..6369ac57 100644 --- a/eo/test/t-eoFitnessAssembledEA.cpp +++ b/eo/test/t-eoFitnessAssembledEA.cpp @@ -26,6 +26,10 @@ mak@dhi.dk */ //----------------------------------------------------------------------------- +#ifdef HAVE_CONFIG_H +#include +#endif + #include #include diff --git a/eo/test/t-eoSharing.cpp b/eo/test/t-eoSharing.cpp index 2cd436da..965041ab 100644 --- a/eo/test/t-eoSharing.cpp +++ b/eo/test/t-eoSharing.cpp @@ -1,17 +1,25 @@ -//----------------------------------------------------------------------------- +#ifdef HAVE_CONFIG_H +#include +#endif // to avoid long name warnings #ifdef _MSC_VER #pragma warning(disable:4786) #endif -#include -#include -#include // runtime_error +#include +#include +#include +#ifdef HAVE_SSTREAM +#include +#else +#include +#endif // general #include #include + //----------------------------------------------------------------------------- struct Dummy : public EO @@ -20,7 +28,7 @@ struct Dummy : public EO void printOn(std::ostream & _os) const { EO::printOn(_os); - cout << " " << xdist ; + std::cout << " " << xdist ; } double xdist; }; @@ -140,7 +148,7 @@ int the_main(int argc, char **argv) peakNumber = 2; } - vector nbIndiPerPeak(peakNumber); + std::vector nbIndiPerPeak(peakNumber); unsigned i, sum=0; // the second item is a vector containing all values diff --git a/eo/test/t-eoVector.cpp b/eo/test/t-eoVector.cpp index 8554b3eb..87c6cdda 100644 --- a/eo/test/t-eoVector.cpp +++ b/eo/test/t-eoVector.cpp @@ -24,11 +24,17 @@ */ //----------------------------------------------------------------------------- +#ifdef HAVE_CONFIG_H +#include +#endif -#include // std::cout -#include // ostrstream, istrstream - -#include +#include +#include +#ifdef HAVE_SSTREAM +#include +#else +#include +#endif #include #include // eoVector diff --git a/eo/test/t-eobin.cpp b/eo/test/t-eobin.cpp index 7c14c6de..8342b341 100644 --- a/eo/test/t-eobin.cpp +++ b/eo/test/t-eobin.cpp @@ -22,9 +22,11 @@ */ //----------------------------------------------------------------------------- +#ifdef HAVE_CONFIG_H +#include +#endif #include // std::cout - #ifdef HAVE_SSTREAM #include #else