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Removing ParadisEO

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This commit is contained in:
cahon 2005-09-02 07:12:27 +00:00
commit e1cc2dd7f5
37 changed files with 4 additions and 2396 deletions
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8
eo/Tutorial/Makefile.am
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@ -1,5 +1,5 @@
if USE_PARADISEO #if USE_PARADISEO
SUBDIRS = Lesson1 Lesson2 Lesson3 Lesson4 Lesson5 ParadisEO #SUBDIRS = Lesson1 Lesson2 Lesson3 Lesson4 Lesson5 ParadisEO
else #else
SUBDIRS = Lesson1 Lesson2 Lesson3 Lesson4 Lesson5 SUBDIRS = Lesson1 Lesson2 Lesson3 Lesson4 Lesson5
endif #endif

2
eo/src/eo
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@ -139,8 +139,6 @@
#include <other/external_eo> #include <other/external_eo>
#include <eoCounter.h> #include <eoCounter.h>
// Cellular parallel evolutionary algorithm
#include <eoToricCellularEasyEA.h>
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
// to be continued ... // to be continued ...

88
eo/src/eoToricCellularEasyEA.h
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@ -1,88 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoToricCellularEasyEA.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoToricCellularEasyEA_h
#define eoToricCellularEasyEA_h
#include <eoCellularEasyEA.h>
#include <cmath>
template <class EOT> class eoToricCellularEasyEA : public eoCellularEasyEA <EOT> {
public :
eoToricCellularEasyEA (eoContinue <EOT> & _cont,
eoEvalFunc <EOT> & _eval,
eoSelectOne <EOT> & _sel_neigh,
eoBinOp <EOT> & _cross,
eoMonOp <EOT> & _mut,
eoSelectOne <EOT> & _sel_repl
) :
eoCellularEasyEA <EOT> (_cont,
_eval,
_sel_neigh,
_cross,
_mut,
_sel_repl) {
}
eoToricCellularEasyEA (eoContinue <EOT> & _cont,
eoEvalFunc <EOT> & _eval,
eoSelectOne <EOT> & _sel_neigh,
eoQuadOp <EOT> & _cross,
eoMonOp <EOT> & _mut,
eoSelectOne <EOT> & _sel_child,
eoSelectOne <EOT> & _sel_repl
) :
eoCellularEasyEA <EOT> (_cont,
_eval,
_sel_neigh,
_cross,
_mut,
_sel_child,
_sel_repl) {
}
// Take care :-). The size of the population must be a square number ! (9, 16, ...)
virtual eoPop <EOT> neighbours (const eoPop <EOT> & pop, int rank) {
int dim2 = pop.size () ;
int dim = (int) std::sqrt ( (double) dim2) ;
int j = rank ;
eoPop <EOT> neigh ;
neigh.push_back (pop [j < dim ? dim2 - dim + j : j - dim]) ;
neigh.push_back (pop [(j + dim) % dim2]) ;
neigh.push_back (pop [(j + 1) % dim != 0 ? j + 1 : j + 1 - dim]) ;
neigh.push_back (pop [j % dim != 0 ? j - 1 : j + dim - 1]) ;
return neigh ;
}
} ;
#endif

7
eo/src/paradisEO/Makefile.am
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@ -1,7 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
SUBDIRS = comm eval island
pkginclude_HEADERS = eoPopAgent.h eoSolAgent.h
### Makefile.am ends here

7
eo/src/paradisEO/comm/Makefile.am
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@ -1,7 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
SUBDIRS = messages
pkginclude_HEADERS = eoListener.h eoLocalListener.h
### Makefile.am ends here

148
eo/src/paradisEO/comm/eoListener.h
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@ -1,148 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoListener.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoListener_h
#define eoListener_h
#include <mpi.h>
#include <vector>
#include <paradisEO/comm/eoLocalListener.h>
#include <paradisEO/comm/messages/to/eoPublishMessTo.h>
#include <paradisEO/comm/messages/to/eoKillMessTo.h>
/**
Necessary for any use of a distributed model.
It makes it possible to have a total state of
that one.
*/
// In the near future ... Enabling different kinds of EO to send/receive ..
template <class EOT> class eoListener : public std::vector <eoLocalListener <EOT> > {
public :
/**
Constructor.
*/
eoListener (int argc, char ** argv) : comm (MPI :: COMM_WORLD) {
// Mpi requires it !
MPI :: Init (argc, argv) ;
// Who and how many ?
rank = MPI :: COMM_WORLD.Get_rank () ;
len = MPI :: COMM_WORLD.Get_size () ;
// To build local listeners algorithms
for (int i = 0 ; i < len ; i ++) {
eoLocalListener <EOT> loc_listen (i) ;
push_back (loc_listen) ;
}
}
/**
Destructor.
*/
~ eoListener () {
MPI :: Finalize () ;
}
/**
A reference to the current listener
*/
eoLocalListener <EOT> & here () {
return operator [] (rank) ;
}
/**
To import messages ...
*/
void update () {
for (int i = 0 ; i < size () ; i ++)
operator [] (i).update () ;
}
/**
To broadcast the std::string identifier of the local process to the
whole neighbouring ...
*/
void publish (std::string label) {
eoPublishMessTo <EOT> mess (label) ;
for (int i = 0 ; i < size () ; i ++)
if (i != rank)
mess (operator [] (i)) ;
here ().label () = label ; // Nothing to send !
}
/**
Blocking. Waits for at least one 'eoLocalListener' to
receive any eoPop ...
*/
void wait () {
bool b = false ;
do {
comm.Probe (MPI :: ANY_SOURCE, 0) ;
update () ;
for (int i = 0 ; i < size () ; i ++)
if (! operator [] (i).empty ())
b = true ;
} while (! b) ;
}
void destroy (std::string label) {
eoKillMessTo <EOT> mess ;
for (int i = 0 ; i < len ; i ++) {
if (operator [] (i).label () == label)
mess (operator [] (i)) ;
}
}
private :
int rank, len ; // Rank of current process, and number of distributed processes
MPI :: Comm & comm ; // Communicator
} ;
#endif

170
eo/src/paradisEO/comm/eoLocalListener.h
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@ -1,170 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoLocalListener.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoLocalListener_h
#define eoLocalListener_h
#include <mpi.h>
#include <queue>
#include <string>
#include <unistd.h>
#include <paradisEO/comm/messages/from/eoHeaderMessFrom.h>
#include <paradisEO/comm/messages/from/eoEOReceiveMessFrom.h>
#include <paradisEO/comm/messages/from/eoEOSendMessFrom.h>
#include <paradisEO/comm/messages/from/eoPublishMessFrom.h>
#include <paradisEO/comm/messages/from/eoKillMessFrom.h>
#include <eoPop.h>
/**
A local listener to pack any coming message or, on contrary, to
send any data to another distributed process.
*/
// Well, not very nice, but necessary for multiples header inclusions :-/
template <class EOT> class eoHeaderMessFrom ;
template <class EOT> class eoMessFrom ;
template <class EOT> class eoMessTo ;
template <class EOT> class eoEOReceiveMessFrom ;
template <class EOT> class eoEOSendMessFrom ;
template <class EOT> class eoPublishMessFrom ;
template <class EOT> class eoKillMessFrom ;
template <class EOT> class eoLocalListener : public std::queue <eoPop <EOT> > {
public :
/**
Constructor
*/
eoLocalListener (int _num_id) :
num_id (_num_id),
comm (& MPI :: COMM_WORLD), // Shared communicator ...
req_EO (false) {
gethostname (host_name, 255) ; // Host ?
}
/**
Any distributed algorithm or agent has its own integer
identifiant, which lets us to distinguish them.
*/
bool operator == (eoLocalListener <EOT> & loc_listen) {
return loc_listen.num_id == num_id ;
}
/**
To import awaiting messages from other algorithms.
For each one, an action may be performed.
*/
void update () {
while (comm -> Iprobe (num_id, 0)) {
// While any more messages
eoHeaderMessFrom <EOT> header (* this) ;
eoMessFrom <EOT> * mess ;
/* The header identifies the kind of messages.
Currently, only four are necessary and so defined */
if (header == "eoEOReceiveMessTo")
mess = new eoEOReceiveMessFrom <EOT> (* this) ;
else if (header == "eoEOSendMessTo")
mess = new eoEOSendMessFrom <EOT> (* this) ;
else if (header == "eoPublishMessTo")
mess = new eoPublishMessFrom <EOT> (* this) ;
else {
mess = new eoKillMessFrom <EOT> (* this) ;
}
// Any side effects ?
mess -> operator () () ;
delete mess ;
}
}
void wait () {
bool b = false ;
do {
comm -> Probe (num_id, 0) ;
update () ;
if (! empty ())
b = true ;
} while (! b) ;
}
/**
String identifier of this algo/agent ?
*/
std::string & label () {
return name_id ;
}
bool & need_immigration () {
return req_EO ;
}
int number () {
return num_id ;
}
void destroy () {
std::cout << "Agent [" << name_id << "] stopped ..." << std::endl ;
MPI :: Finalize () ;
exit (0) ;
}
char host_name [255] ; // Host std::string identifier
private :
MPI :: Comm * comm ; // MPI Communicator
std::string name_id ; // String id.
int num_id ; // MPI id.
bool req_EO ;
// Friendly classes
friend class eoMessFrom <EOT> ;
friend class eoMessTo <EOT> ;
} ;
#endif

8
eo/src/paradisEO/comm/messages/Makefile.am
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@ -1,8 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
SUBDIRS = from to
pkginclude_HEADERS = eoMessFrom.h eoMessTo.h
### Makefile.am ends here

66
eo/src/paradisEO/comm/messages/eoMessFrom.h
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@ -1,66 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoMessFrom.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoMessFrom_h
#define eoMessFrom_h
#include <string.h>
#include <mpi.h>
/**
An abstract class for any kind of coming message.
Common features are declared.
*/
template <class EOT> class eoLocalListener ;
template <class EOT> class eoMessFrom {
public :
/**
Constructor
*/
eoMessFrom (eoLocalListener <EOT> & _loc_listen) :
loc_listen (_loc_listen),
comm (MPI :: COMM_WORLD) {
}
/**
Well ...
*/
virtual void operator () () = 0 ;
protected :
MPI :: Comm & comm ; // Communicator
eoLocalListener <EOT> & loc_listen ; // Transmitter
} ;
#endif

75
eo/src/paradisEO/comm/messages/eoMessTo.h
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@ -1,75 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoMessTo.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoMessTo_h
#define eoMessTo_h
#include <string.h>
#include <mpi.h>
#include <paradisEO/comm/messages/to/eoHeaderMessTo.h>
/**
An abstract class for any sending message.
Common features are declared.
*/
template <class EOT> class eoLocalListener ;
template <class EOT> class eoMessTo {
public :
/**
Constructor. A std::string identifier, being defined in subclasses
is given for any kind of messages.
*/
eoMessTo (std::string _label) :
label (_label),
comm (MPI :: COMM_WORLD) {
}
/**
Must be called in sub-classes ...
*/
void operator () (eoLocalListener <EOT> & loc_listen) {
eoHeaderMessTo <EOT> header (label) ;
header (loc_listen) ;
}
protected :
MPI :: Comm & comm ; // MPI Communicator
std::string label ; // String identifier of the message
} ;
#endif

9
eo/src/paradisEO/comm/messages/from/Makefile.am
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@ -1,9 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
pkginclude_HEADERS = eoEOReceiveMessFrom.h \
eoEOSendMessFrom.h \
eoHeaderMessFrom.h \
eoKillMessFrom.h \
eoPublishMessFrom.h
### Makefile.am ends here

64
eo/src/paradisEO/comm/messages/from/eoEOReceiveMessFrom.h
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@ -1,64 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoEOReceiveMessFrom.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoEOReceiveMessFrom_h
#define eoEOReceiveMessFrom_h
#include <string.h>
#include <mpi.h>
#include <paradisEO/comm/messages/eoMessFrom.h>
/**
A message expressing the need of immigration of EO ...
*/
template <class EOT> class eoEOReceiveMessFrom : public eoMessFrom <EOT> {
public :
/**
Constructor
*/
eoEOReceiveMessFrom (eoLocalListener <EOT> & _loc_listen) :
eoMessFrom <EOT> (_loc_listen) {
// Nothing else to receive :-)
}
void operator () () {
loc_listen.need_immigration () = true ;
}
} ;
#endif

82
eo/src/paradisEO/comm/messages/from/eoEOSendMessFrom.h
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@ -1,82 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoEOSendMessFrom.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoEOSendMessFrom_h
#define eoEOSendMessFrom_h
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <mpi.h>
#include <iostream>
#include <string>
#ifdef HAVE_SSTREAM
#include <sstream>
#else
#include <strstream.h>
#endif
#include <paradisEO/comm/messages/eoMessFrom.h>
/**
A message embeding a set of immigrants ...
*/
template <class EOT> class eoEOSendMessFrom : public eoMessFrom <EOT>
{
public:
/**
Constructor
*/
eoEOSendMessFrom (eoLocalListener <EOT> & _loc_listen)
: eoMessFrom <EOT> (_loc_listen) {
MPI :: Status stat ;
comm.Probe (loc_listen.number (), 0, stat) ;
int len = stat.Get_count (MPI :: CHAR) ;
char buff [len] ;
comm.Recv(buff, len, MPI::CHAR, loc_listen.number (), 0) ;
#ifdef HAVE_SSTREAM
std::istringstream f(buff);
#else
istrstream f(buff);
#endif
_pop.readFrom(f);
}
void operator() () {
loc_listen.push (_pop) ;
// std::cout << "Reception de " << pop.size () << "individus " << std::endl ;
}
protected:
eoPop <EOT> _pop ; // New immigrants !
};
#endif

65
eo/src/paradisEO/comm/messages/from/eoHeaderMessFrom.h
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@ -1,65 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoHeaderMessFrom.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoHeaderMessFrom_h
#define eoHeaderMessFrom_h
#include <string>
#include <mpi.h>
template <class EOT> class eoLocalListener ;
/**
A header is an identifier for the kind of
message to be then received ...
*/
template <class EOT> class eoHeaderMessFrom : public std::string {
public :
/**
Second constructor. On contrary, the header is
waited for and built from the local listener.
It comes before a message.
*/
eoHeaderMessFrom (eoLocalListener <EOT> & loc_listen) :
comm (MPI :: COMM_WORLD) {
MPI :: Status stat ;
comm.Probe (loc_listen.number (), 0, stat) ; // Blocking
int len = stat.Get_count (MPI :: CHAR) ;
char buff [len] ; // Temp. buffer
comm.Recv (buff, len, MPI :: CHAR, loc_listen.number (), 0) ;
assign (buff) ;
}
private :
MPI :: Comm & comm ; // Communicator
} ;
#endif

64
eo/src/paradisEO/comm/messages/from/eoKillMessFrom.h
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@ -1,64 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoKillMessFrom.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoKillMessFrom_h
#define eoKillMessFrom_h
#include <string.h>
#include <mpi.h>
#include <paradisEO/comm/messages/eoMessFrom.h>
/**
To destroy current process ...
*/
template <class EOT> class eoKillMessFrom : public eoMessFrom <EOT> {
public :
/**
Constructor
*/
eoKillMessFrom (eoLocalListener <EOT> & _loc_listen) :
eoMessFrom <EOT> (_loc_listen) {
// Nothing else to receive :-)
}
void operator () () {
loc_listen.destroy () ;
}
} ;
#endif

68
eo/src/paradisEO/comm/messages/from/eoPublishMessFrom.h
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@ -1,68 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoPublishMessFrom.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoPublishMessFrom_h
#define eoPublishMessFrom_h
#include <string.h>
#include <mpi.h>
#include <paradisEO/comm/messages/eoMessFrom.h>
/**
To be notified of the lauch of a new kind of process somewhere ...
*/
template <class EOT> class eoPublishMessFrom : public eoMessFrom <EOT> {
public :
/**
Constructor
*/
eoPublishMessFrom (eoLocalListener <EOT> & _loc_listen) :
eoMessFrom <EOT> (_loc_listen) {
MPI :: Status stat ;
comm.Probe (loc_listen.number (), 0, stat) ;
int len = stat.Get_count (MPI :: CHAR) ;
char buff [len] ;
comm.Recv (buff, len, MPI :: CHAR, loc_listen.number (), 0) ;
label.assign (buff) ;
}
void operator () () {
loc_listen.label () = label ;
}
private :
std::string label ; // String identifier ...
} ;
#endif

9
eo/src/paradisEO/comm/messages/to/Makefile.am
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@ -1,9 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
pkginclude_HEADERS = eoEOReceiveMessTo.h \
eoEOSendMessTo.h \
eoHeaderMessTo.h \
eoKillMessTo.h \
eoPublishMessTo.h
### Makefile.am ends here

52
eo/src/paradisEO/comm/messages/to/eoEOReceiveMessTo.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoEOReceiveMessTo.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
/**
A message expressing an immigration need.
*/
#ifndef eoEOReceiveMessTo_h
#define eoEOReceiveMessTo_h
#include <mpi.h>
#include <paradisEO/comm/messages/eoMessTo.h>
template <class EOT> class eoEOReceiveMessTo : public eoMessTo <EOT> {
public :
/**
Constructor ...
*/
eoEOReceiveMessTo () : eoMessTo <EOT> ("eoEOReceiveMessTo") {
}
// Nothing else ! :-)
} ;
#endif

79
eo/src/paradisEO/comm/messages/to/eoEOSendMessTo.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoEOSendMessTo.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoEOSendMessTo_h
#define eoEOSendMessTo_h
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <mpi.h>
#ifdef HAVE_SSTREAM
#include <sstream>
#else
#include <strstream.h>
#endif
#include <eoPop.h>
#include <paradisEO/comm/messages/eoMessTo.h>
/** A message embeding immigrants to send to ... */
template <class EOT> class eoEOSendMessTo : public eoMessTo <EOT> {
public :
/**
Constructor ...
*/
eoEOSendMessTo (eoPop <EOT> & _pop )
: eoMessTo <EOT> ("eoEOSendMessTo"),
pop (_pop)
{}
/**
To send the given population ...
*/
void operator () (eoLocalListener <EOT> & loc_listen) {
eoMessTo <EOT> :: operator () (loc_listen) ;
#ifdef HAVE_SSTREAM
std::ostringstream f;
pop.printOn(f);
comm.Send(f.str().c_str(), f.str().size(), MPI::CHAR, loc_listen.number(), 0);
#else
std::ostrstream f;
pop.printOn (f);
comm.Send (f.str(), f.pcount(), MPI::CHAR, loc_listen.number(), 0);
#endif
loc_listen.need_immigration () = false;
}
protected:
eoPop <EOT> & pop ; // The set of EO to send.
} ;
#endif

71
eo/src/paradisEO/comm/messages/to/eoHeaderMessTo.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoHeaderMessTo.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoHeaderMessTo_h
#define eoHeaderMessTo_h
#include <string>
#include <mpi.h>
template <class EOT> class eoLocalListener ;
/**
A header is an identifier for the kind of
message to be then sent ...
*/
template <class EOT> class eoHeaderMessTo : public std::string {
public :
/**
Constructor.
The std::string identifiant id given in parameter.
*/
eoHeaderMessTo (std::string label) :
std::string (label),
comm (MPI :: COMM_WORLD) {
}
/**
Emission of the header to the next process. The body message
should then follow ...
*/
void operator () (eoLocalListener <EOT> & loc_listen) {
comm.Send (c_str (), size () + 1, MPI :: CHAR, loc_listen.number (), 0) ;
}
private :
MPI :: Comm & comm ; // Communicator
} ;
#endif

52
eo/src/paradisEO/comm/messages/to/eoKillMessTo.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoKillMessTo.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
/**
To destroy a distant agent ...
*/
#ifndef eoKillMessTo_h
#define eoKillMessTo_h
#include <mpi.h>
#include <paradisEO/comm/messages/eoMessTo.h>
template <class EOT> class eoKillMessTo : public eoMessTo <EOT> {
public :
/**
Constructor ...
*/
eoKillMessTo () : eoMessTo <EOT> ("eoKillMessTo") {
}
// Nothing else ! :-)
} ;
#endif

66
eo/src/paradisEO/comm/messages/to/eoPublishMessTo.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoPublishMessTo.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
/**
To let know from distributed algos the std::string identifier
of the home process ...
*/
#ifndef eoPublishMessTo_h
#define eoPublishMessTo_h
#include <mpi.h>
#include <string.h>
#include <paradisEO/comm/messages/eoMessTo.h>
#include <paradisEO/comm/eoLocalListener.h>
template <class EOT> class eoPublishMessTo : public eoMessTo <EOT> {
public :
/**
Constructor
*/
eoPublishMessTo (std::string & _label
) :
eoMessTo <EOT> ("eoPublishMessTo"),
label (_label) {
}
void operator () (eoLocalListener <EOT> & loc_listen) {
eoMessTo <EOT> :: operator () (loc_listen) ;
comm.Send (label.c_str (), label.size () + 1, MPI :: CHAR, loc_listen.number (), 0) ;
}
private :
std::string label ; // String identifier to send ...
} ;
#endif

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eo/src/paradisEO/eoPopAgent.h
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@ -1,89 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoPopAgent.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoPopAgent_h
#define eoPopAgent_h
#include <eoPopAlgo.h>
#include <paradisEO/comm/eoListener.h>
#include <paradisEO/comm/messages/to/eoEOSendMessTo.h>
#include <string>
/**
A popAgent is waiting for any populations that are queued.
For each one, a processing is performed.
*/
template <class EOT> class eoPopAgent {
public :
/**
Constructor
*/
eoPopAgent (std::string _label,
eoListener <EOT> & _listen,
eoPopAlgo <EOT> & _algo
) :
label (_label),
listen (_listen),
algo (_algo) {
}
// Waiting for eoPop reception and then ...
void operator () () {
listen.publish (label) ; // To be known by everyone ...
while (true) {
listen.wait () ; // While no neighbour sends any eoPop ...
for (int i = 0 ; i < listen.size () ; i ++) {
while (! listen [i].empty ()) {
eoPop <EOT> & pop = listen [i].front () ;
std::cout << "Agent [" << label << "] on " << listen.here ().host_name << " : Receiving " << pop.size () << " individuals ..." << std::endl ;
algo (pop) ;
eoEOSendMessTo <EOT> mess (pop) ;
mess (listen [i]) ; // Coming back ...
listen [i].pop () ;
}
}
}
}
private :
std::string label ; // std::string identifier
eoListener <EOT> & listen ; // EO's listener
eoPopAlgo <EOT> & algo ; // Local supplied algo
} ;
#endif

91
eo/src/paradisEO/eoSolAgent.h
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@ -1,91 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoSolAgent.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoSolAgent_h
#define eoSolAgent_h
#include <eoSolAlgo.h>
#include <paradisEO/comm/eoListener.h>
#include <paradisEO/comm/messages/to/eoEOSendMessTo.h>
#include <string>
/**
A solAgent is waiting for any solutions that are queued.
For each one, a processing is performed.
*/
template <class EOT> class eoSolAgent {
public :
/**
Constructor
*/
eoSolAgent (std::string _label,
eoListener <EOT> & _listen,
eoSolAlgo <EOT> & _algo
) :
label (_label),
listen (_listen),
algo (_algo) {
}
// Waiting for eoPop reception and then ...
void operator () () {
listen.publish (label) ; // To be known by everyone ...
while (true) {
listen.wait () ; // While no neighbour sends any eoPop ...
for (int i = 0 ; i < listen.size () ; i ++) {
while (! listen [i].empty ()) {
EOT & sol = listen [i].front () ;
std::cout << "Agent [" << label << "] on " << listen.here ().host_name << " : Receiving one individual ..." << std::endl ;
algo (sol) ;
eoPop <EOT> pop ;
pop.push_back (sol) ;
eoEOSendMessTo <EOT> mess (pop) ;
mess (listen [i]) ; // Coming back ...
listen [i].pop () ;
}
}
}
}
private :
std::string label ; // std::string identifier
eoListener <EOT> & listen ; // EO's listener
eoSolAlgo <EOT> & algo ; // Local supplied algo
} ;
#endif

9
eo/src/paradisEO/eval/Makefile.am
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@ -1,9 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
pkginclude_HEADERS = eoDistEvalEasyEA.h \
eoDistEvalEasyEA.h \
eoDistPopEvalFunc.h \
eoEvaluator.h \
eoPopEval.h
### Makefile.am ends here

63
eo/src/paradisEO/eval/eoDistEvalEasyEA.h
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@ -1,63 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoDistEvalEasyEA.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoDistEvalEasyEA_h
#define eoDistEvalEasyEA_h
#include <eoEasyEA.h>
#include <paradisEO/comm/eoListener.h>
#include <paradisEO/eval/eoDistPopEvalFunc.h>
/**
Intended for evaluation CPU cost evolutionnary algorithm ...
*/
template <class EOT> class eoDistEvalEasyEA : public eoEasyEA <EOT> {
public :
/**
Constructor. Caution ! The provided label is the one
of distributed evaluators to search for and not those of
the master program, which is isn't necessary.
*/
eoDistEvalEasyEA (eoListener <EOT> & _listen,
eoEasyEA <EOT> & _ea,
std::string _label
) :
pop_eval (eoDistPopEvalFunc <EOT> (_listen, _label, _ea.eval)),
eoEasyEA <EOT> (_ea.continuator,
pop_eval,
_ea.breed,
_ea.replace
) {
}
private :
eoDistPopEvalFunc <EOT> pop_eval ;
} ;
#endif

127
eo/src/paradisEO/eval/eoDistPopEvalFunc.h
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@ -1,127 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoDistPopEvalFunc.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoDistPopEvalFunc_h
#define eoDistPopEvalFunc_h
#include <eoPopEvalFunc.h>
#include <paradisEO/comm/messages/to/eoEOSendMessTo.h>
template <class EOT> class eoDistPopEvalFunc : public eoPopEvalFunc <EOT> {
public :
/**
Constructor
*/
eoDistPopEvalFunc (eoListener <EOT> & _listen,
std::string & _label,
eoEvalFunc <EOT> & _eval
) :
listen (_listen),
label (_label),
eval (_eval) {
}
void operator () (eoPop <EOT> & _parents, eoPop <EOT> & _offspring) {
int num_eval = 0 ; // How many distributed evaluators ?
int old_size = _offspring.size () ;
do {
listen.update () ;
for (int i = 0 ; i < listen.size () ; i ++) {
if (listen [i].label () == label)
num_eval ++ ;
}
if (num_eval == 0) {
std::cout << "No [" << label << "] available ..." << std::endl ;
std::cout << "Waiting for a few seconds ..." << std::endl ;
sleep (2) ;
}
} while (num_eval == 0) ;
// Partitioning ...
int j = 0, l = 0 ;
bool t [listen.size ()] ;
for (int i = 0 ; i < listen.size () ; i ++)
t [i] = false ;
for (int i = 0 ; i < num_eval ; i ++) {
eoPop <EOT> pop ;
for (int k = 0 ; k < old_size / num_eval ; k ++)
pop.push_back (_offspring [j ++]) ;
if (i < old_size % num_eval)
pop.push_back (_offspring [j ++]) ;
// Next evaluator ...
while (listen [l].label () != label) {
l ++ ;
}
eoEOSendMessTo <EOT> mess (pop) ;
mess (listen [l]) ;
t [l ++] = true ;
}
// On standby of the returns
_offspring.clear () ;
// while (_offspring.size () != old_size) {
// listen.wait () ;
for (int i = 0 ; i < listen.size () ; i ++)
if (t [i]) {
listen [i].wait () ;
//while (! listen [i].empty ()) {
eoPop <EOT> & pop = listen [i].front () ;
for (int m = 0 ; m < pop.size () ; m ++)
_offspring.push_back (pop [m]) ;
listen [i].pop () ;
//}
//}
}
}
private :
eoListener <EOT> & listen ;
std::string label ; // String identifier of evaluators
eoEvalFunc <EOT> & eval ;
} ;
#endif

64
eo/src/paradisEO/eval/eoEvaluator.h
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@ -1,64 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoEvaluator.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoEvaluator_h
#define eoEvaluator_h
#include <paradisEO/eoPopAgent.h>
#include <paradisEO/eval/eoPopEval.h>
#include <eoEvalFunc.h>
#include <string>
/**
A special pop. based agent, applied to eval sub_populations.
Rather intended for evolutionnary algorithms, with evaluations
performed remotely.
*/
template <class EOT> class eoEvaluator : public eoPopAgent <EOT> {
public :
/**
Constructor
*/
eoEvaluator (std::string _label,
eoListener <EOT> & _listen,
eoEvalFunc <EOT> & _eval
) :
pop_eval (_eval),
eoPopAgent <EOT> (_label,
_listen,
pop_eval) {
}
private :
eoPopEval <EOT> pop_eval ;
} ;
#endif

66
eo/src/paradisEO/eval/eoPopEval.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoPopEval.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: cahon@lifl.fr
*/
#ifndef eoPopEval_h
#define eoPopEval_h
#include <eoEvalFunc.h>
#include <apply.h>
#include <eoPopAlgo.h>
/**
An evaluator which computes fitnesses of a given population in a
sequentially manner.
*/
template <class EOT> class eoPopEval : public eoPopAlgo <EOT> {
public :
/**
Constructor
*/
eoPopEval (eoEvalFunc <EOT> & _eval) : eval(_eval) {
}
/**
Values sequentially each EO from the pop. given in parameter.
*/
void operator () (eoPop <EOT> & _pop) {
for (unsigned i = 0 ; i < _pop.size () ; i ++)
_pop [i].invalidate () ;
apply <EOT> (eval, _pop) ;
}
private :
eoEvalFunc <EOT> & eval ;
} ;
#endif

10
eo/src/paradisEO/island/Makefile.am
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@ -1,10 +0,0 @@
# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
SUBDIRS = topologies
pkginclude_HEADERS = eoConnectivity.h \
eoCyclicGenContinue.h \
eoIslandsEasyEA.h \
eoMigUpdater.h
### Makefile.am ends here

88
eo/src/paradisEO/island/eoConnectivity.h
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@ -1,88 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoConnectivity.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoConnectivity_h
#define eoConnectivity_h
#include <vector>
#include <paradisEO/comm/eoLocalListener.h>
#include <paradisEO/comm/eoListener.h>
/**
It defines the entering and outgoing channels of communication
towards the other considered agents.
*/
template <class EOT> class eoConnectivity {
public :
/**
Constructor. Names of others processes to consider in the topology are given
in parameter.
*/
eoConnectivity (eoListener <EOT> & _listen,
std::vector <std::string> & _sel_neigh
) :
listen (_listen),
sel_neigh (_sel_neigh) {
}
/**
Computes the subset of neighbours to receive
immigrants from ...
*/
virtual std::vector <eoLocalListener <EOT> *> from () = 0 ;
/**
Computes the subset of neighbours to send
emigrants to ...
*/
virtual std::vector <eoLocalListener <EOT> *> to () = 0 ;
protected :
eoListener <EOT> & listen ;
std::vector <std::string> sel_neigh ;
bool selected (std::string & id) {
for (int i = 0 ; i < sel_neigh.size () ; i ++)
if (sel_neigh [i] == id)
return true ;
return false ;
}
} ;
#endif

65
eo/src/paradisEO/island/eoCyclicGenContinue.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoCyclicGenContinue.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoCyclicGenContinue_h
#define eoCyclicGenContinue_h
#include <eoContinue.h>
#include <eoPop.h>
/**
This continuator returns false in a periodic way during generations.
*/
template <class EOT> class eoCyclicGenContinue: public eoContinue <EOT> {
public:
/**
Constructor. The frequency is given in parameter.
*/
eoCyclicGenContinue (unsigned _freq,
unsigned init_count = 0) :
freq (_freq),
count (init_count) {
}
/**
Return true only if the current number of performed generations
modulo the frequency equals none.
*/
virtual bool operator () (const eoPop <EOT> & pop) {
count ++ ;
return (count % freq) != 0 ;
}
private:
unsigned count, freq ;
} ;
#endif

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eo/src/paradisEO/island/eoIslandsEasyEA.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoIslandsEasyEA"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoIslandsEasyEA_h
#define eoIslandsEasyEA_h
#include <vector>
#include <string>
#include <paradisEO/comm/eoListener.h>
#include <paradisEO/island/eoConnectivity.h>
#include <paradisEO/island/eoMigUpdater.h>
#include <eoContinue.h>
#include <eoSelect.h>
#include <eoReplacement.h>
#include <utils/eoCheckPoint.h>
#include <utils/eoUpdater.h>
/**
An island distributed easy evolutionary algorithm.
It embeds an instance of easyEA. The behavior of this
last one isn't modified. However, exchanges of individuals
are performed with other EAs.
*/
template <class EOT> class eoIslandsEasyEA : public eoEasyEA <EOT> {
public :
/**
Constructor
*/
eoIslandsEasyEA (std::string _id,
eoListener <EOT> & _listen,
eoConnectivity <EOT> & _conn,
eoEasyEA <EOT> & _ea,
eoContinue <EOT> & _cont,
eoSelect <EOT> & _select,
eoReplacement <EOT> & _replace
) :
id (_id),
listen (_listen),
conn (_conn),
chkp (_ea.continuator),
mig_upd (_listen,
_conn,
_cont,
_select,
_replace),
eoEasyEA <EOT> (chkp,
_ea.eval,
_ea.breed,
_ea.replace
) {
chkp.add (mig_upd) ;
}
virtual void operator () (eoPop <EOT> & pop) {
mig_upd (pop) ; // Sets pop. to send/receive EO
listen.publish (id) ;
eoEasyEA <EOT> :: operator () (pop) ;
listen.publish ("_") ;
}
private :
// Internal components
std::string id ; // String identifiant of this algorithm
eoListener <EOT> & listen ; // The neighbouring of concurrent algos
eoConnectivity <EOT> & conn ; // Communication topology
eoCheckPoint <EOT> chkp ;
eoMigUpdater <EOT> mig_upd ;
} ;
#endif

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eo/src/paradisEO/island/eoMigUpdater.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoMigUpdater.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoMigUpdater_h
#define eoMigUpdater_h
#include <eoPop.h>
#include <eoSelect.h>
#include <eoReplacement.h>
#include <eoContinue.h>
#include <utils/eoUpdater.h>
#include <paradisEO/island/eoConnectivity.h>
#include <paradisEO/comm/messages/to/eoEOSendMessTo.h>
#include <paradisEO/comm/messages/to/eoEOReceiveMessTo.h>
#include <mpi.h>
/**
An updater. After any evolution of an evolutionnary algorithm, it
moves some EO from/into the current population from/to a subset
of the neighbouring algos.
*/
template <class EOT> class eoMigUpdater : public eoUpdater {
public :
/**
Constructor. Some features which should be specified.
- The neighbouring interface,
- The communication topology,
- Which EO instancies from the given population should be sent ?
- How integrate new immigrants ?
- Then, an event to determine the time to ask neighbouring sources
for sending sets of EO.
*/
eoMigUpdater (eoListener <EOT> & _listen,
eoConnectivity <EOT> & _conn,
eoContinue <EOT> & _cont,
eoSelect <EOT> & _select,
eoReplacement <EOT> & _replace) :
listen (_listen),
conn (_conn),
cont (_cont),
select (_select),
replace (_replace) {
}
/**
Sets the given population to be the one to receive and/or send EO
*/
void operator () (eoPop <EOT> & _pop) {
pop = & _pop ;
}
/**
Should be often called. (after each local evolution ?)
*/
virtual void operator () () {
listen.update () ;
// listen.display () ;
std::vector <eoLocalListener <EOT> *> src = conn.from (), dest = conn.to () ;
// Any coming immigrants ?
for (int i = 0 ; i < src.size () ; i ++) {
src [i] -> update () ;
while (! src [i] -> empty ()) {
replace (* pop, src [i] -> front ()) ;
std::cout << "[" << listen.here ().host_name << "] Arrival of " << src [i] -> front ().size () << " individuals ..." << std::endl ;
src [i] -> pop () ;
}
}
// Any request ?
for (int i = 0 ; i < dest.size () ; i ++)
if (dest [i] -> need_immigration ()) {
eoPop <EOT> emm ; // Emmigrants
select (* pop, emm) ;
eoEOSendMessTo <EOT> mess (emm) ;
mess (* (dest [i])) ;
}
// Any request to submit ?
if (! cont (* pop))
for (int i = 0 ; i < src.size () ; i ++) {
eoEOReceiveMessTo <EOT> mess ;
mess (* (src [i])) ;
}
}
private :
eoConnectivity <EOT> & conn ; // The used topology
eoContinue <EOT> & cont ; /* The 'event' which determines
need of immigration */
eoSelect <EOT> & select ; /* In order to select emmigrants
from the current population */
eoReplacement <EOT> & replace ; // The replacement procedure
eoPop <EOT> * pop ; // The population considered
eoListener <EOT> & listen ; // A reference to the neighbouring
} ;
#endif

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eo/src/paradisEO/island/topologies/Makefile.am
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# Copyright (C) 2004 Jochen Küpper <jochen@fhi-berlin.mpg.de>
pkginclude_HEADERS = eoFullConnectivity.h\
eoRingConnectivity.h
### Makefile.am ends here

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eo/src/paradisEO/island/topologies/eoFullConnectivity.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoFullConnectivity.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoFullConnectivity_h
#define eoFullConnectivity_h
#include <paradisEO/island/eoConnectivity.h>
/**
Each algorithm is also connected to the whole neighbouring ...
*/
template <class EOT> class eoFullConnectivity : public eoConnectivity <EOT> {
public :
/**
Constructor
*/
eoFullConnectivity (eoListener <EOT> & _listen,
std::vector <std::string> & _sel_neigh
) : eoConnectivity <EOT> (_listen, _sel_neigh) {
}
virtual std::vector <eoLocalListener <EOT> *> from () {
listen.update () ;
std::vector <eoLocalListener <EOT> *> v ;
for (int i = 0 ; i < listen.size () ; i ++)
if (i != listen.here ().number () && selected (listen [i].label ()))
v.push_back (& listen [i]) ;
return v ;
}
virtual std::vector <eoLocalListener <EOT> *> to () {
listen.update () ;
std::vector <eoLocalListener <EOT> *> v ;
for (int i = 0 ; i < listen.size () ; i ++)
if (i != listen.here ().number () && selected (listen [i].label ()))
v.push_back (& listen [i]) ;
return v ;
}
} ;
#endif

122
eo/src/paradisEO/island/topologies/eoRingConnectivity.h
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// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
// "eoRingConnectivity.h"
// (c) OPAC Team, LIFL, 2002
/* This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Cont act: cahon@lifl.fr
*/
#ifndef eoRingConnectivity_h
#define eoRingConnectivity_h
#include <paradisEO/island/eoConnectivity.h>
/**
Each algorithm has a single std::pair of entering and outgoing
neighbours, so that the unit constitutes a circular topology.
*/
template <class EOT> class eoRingConnectivity : public eoConnectivity <EOT> {
public :
/**
Constructor
*/
eoRingConnectivity (eoListener <EOT> & _listen,
std::vector <std::string> & _sel_neigh
) : eoConnectivity <EOT> (_listen, _sel_neigh) {
}
virtual std::vector <eoLocalListener <EOT> *> from () {
listen.update () ;
std::vector <eoLocalListener <EOT> *> v ;
int i, k = listen.size () ;
for (i = 0 ; i < k ; i ++) {
if (listen [i] == listen.here ())
break ;
}
for (int j = (i - 1 + k) % k ; j != i ; j = (j - 1 + k) % k)
if (selected (listen [j].label ())) {
v.push_back (& listen [j]) ;
break ;
}
return v ;
}
/**
*/
virtual std::vector <eoLocalListener <EOT> *> to () {
listen.update () ;
std::vector <eoLocalListener <EOT> *> v ;
int i, k = listen.size () ;
for (i = 0 ; i < k ; i ++)
if (listen [i] == listen.here ())
break ;
for (int j = (i + 1) % k ; j != i ; j = (j + 1) % k)
if (selected (listen [j].label ())) {
v.push_back (& listen [j]) ;
break ;
}
return v ;
}
} ;
#endif