Updated build-prcess to be completely under automake control.

For the tutorial the old Makefiles are saved as Makefile.simple in all
the respective directories.

Use generated config.h instead of command-line passing of preprocessor
flags.

Updated support files from current automake.

eo/app/mastermind/mastermind.cpp

@@ -7,7 +7,8 @@
 #include <iostream>                // cerr cout
 #include <fstream>                 // ifstream
 #include <string>                  // string
-#include <eo>                      // all usefull eo stuff
+#include <eo>                      // all usefull eo stuff\
+
 #include "mastermind.h"            // Chrom eoChromInit eoChromMutation eoChromXover eoChromEvaluator
 
 using namespace std;