Merge branch 'master' of ssh://eodev.git.sourceforge.net/gitroot/eodev/eodev

eo/src/eoDualFitness.h

@@ -29,6 +29,10 @@ Authors:
 #include <functional>
 #include <iostream>
 #include <utility> // for std::pair
+#include <string>
+
+#include <utils/eoStat.h>
+#include <utils/eoLogger.h>
 
 /** @addtogroup Evaluation
  * @{
@@ -63,7 +67,7 @@ Authors:
 template <class BaseType, class Compare >
 class eoDualFitness
 {
-private:
+protected:
     //! Scalar type of the fitness (generally a double)
     BaseType _value;
 
@@ -241,6 +245,68 @@ typedef eoDualFitness<double, std::greater<double> > eoMinimizingDualFitness;
 template< class EOT>
 bool eoIsFeasible ( const EOT & sol ) { return sol.fitness().is_feasible(); }
 
+
+/** Embed two eoStat and call the first one on the feasible individuals and
+ * the second one on the unfeasible ones, merge the two resulting value in
+ * a string, separated by a given marker.
+ */
+//template<class EOT, class T>
+template<class EOT, class EOSTAT>
+class eoDualStatSwitch : public eoStat< EOT, std::string >
+{
+public:
+    using eoStat<EOT,std::string>::value;
+
+//    eoDualStatSwitch( eoStat<EOT,T> & stat_feasible,  eoStat<EOT,T> & stat_unfeasible, std::string sep=" "  ) :
+    eoDualStatSwitch( EOSTAT & stat_feasible,  EOSTAT & stat_unfeasible, std::string sep=" "  ) :
+        _stat_feasible(stat_feasible), 
+        _stat_unfeasible(stat_unfeasible), 
+        _sep(sep),
+        eoStat<EOT,std::string>(
+                "?"+sep+"?", 
+                stat_feasible.longName()+sep+stat_unfeasible.longName() 
+            )
+    { }
+
+    virtual void operator()( const eoPop<EOT> & pop )
+    {
+        eoPop<EOT> pop_feasible;
+        pop_feasible.reserve(pop.size());
+        
+        eoPop<EOT> pop_unfeasible;
+        pop_unfeasible.reserve(pop.size());
+
+        for( typename eoPop<EOT>::const_iterator ieot=pop.begin(), iend=pop.end(); ieot!=iend; ++ieot ) {
+            /*
+            if( ieot->invalid() ) {
+                eo::log << eo::errors << "ERROR: trying to access to an invalid fitness" << std::endl;
+            }
+            */
+            if( ieot->fitness().is_feasible() ) {
+                pop_feasible.push_back( *ieot );
+            } else {
+                pop_unfeasible.push_back( *ieot );
+            }
+        }
+
+        _stat_feasible( pop_feasible );
+        _stat_unfeasible( pop_unfeasible );
+        
+        std::ostringstream out;
+        out << _stat_feasible.value() << _sep << _stat_unfeasible.value();
+
+        value() = out.str();
+    }
+
+protected:
+//    eoStat<EOT,T> & _stat_feasible;
+//    eoStat<EOT,T> & _stat_unfeasible;
+    EOSTAT & _stat_feasible;
+    EOSTAT & _stat_unfeasible;
+
+    std::string _sep;
+};
+    
 /** @} */
 #endif // _eoDualFitness_h_
 

eo/src/eoFunctor.h

@@ -29,7 +29,7 @@
 
 #include <functional>
 
-/** @ddtogroup Core
+/** @addtogroup Core
  * @{
  */
 

eo/src/eoGenContinue.h

@@ -71,7 +71,10 @@ public:
   }
   
   /** Sets the number of generations to reach 
-	    and sets the current generation to 0 (the begin)*/
+	    and sets the current generation to 0 (the begin)
+        
+        @todo replace this by an "init" method 
+    */
   virtual void totalGenerations( unsigned long _tg ) { 
 	  repTotalGenerations = _tg; 
 	  thisGeneration = 0;

eo/src/eoMergeReduce.h

@@ -37,9 +37,9 @@
 /** 
 Replacement strategies that combine en eoMerge and an eoReduce.
 
-@classes: eoMergeReduce, the base (pure abstract) class
+@class eoMergeReduce, the base (pure abstract) class
-          eoPlusReplacement the ES plus strategy
+@class eoPlusReplacement the ES plus strategy
-	  eoCommaReplacement the ES comma strategy
+@class eoCommaReplacement the ES comma strategy
 */
 
 /**

eo/src/eoReplacement.h

@@ -57,9 +57,9 @@ MS 12/12/2000
 
   @see eoMerge, eoReduce, eoMergeReduce, eoReduceMerge 
 
-@classes eoReplacement,                    base (pure abstract) class
+@class eoReplacement,                    base (pure abstract) class
-         eoGenerationalReplacement,        as it says ...
+@class eoGenerationalReplacement,        as it says ...
-	 eoWeakElitistReplacement          a wrapper to add elitism
+@class eoWeakElitistReplacement          a wrapper to add elitism
 
 */
 

eo/src/eoSteadyFitContinue.h

@@ -83,7 +83,10 @@ public:
   }
 
   /** Sets the parameters (minimum nb of gen. + steady nb of gen.) 
-      and sets the current generation to 0 (the begin)*/
+      and sets the current generation to 0 (the begin)
+      
+      @todo replace thi by an init method ?
+      */
   virtual void totalGenerations( unsigned long _mg, unsigned long _sg ) { 
     repMinGenerations = _mg; 
     repSteadyGenerations = _sg;

eo/src/eoSurviveAndDie.h

@@ -42,8 +42,9 @@ kills the ones that are to die,
 puts the ones that are to survive into the second argument
 removes them from the first pop argument
 
-@classes: eoSurviveAndDie, eoDeterministicSurviveAndDie,
+@class eoSurviveAndDie
-          eoDeterministicSaDReplacement
+@class eoDeterministicSurviveAndDie,
+@class eoDeterministicSaDReplacement
 */
 
 /** @addtogroup Replacors

eo/src/utils/eoLogger.cpp

@@ -26,7 +26,12 @@ Authors:
 
 */
 
+#ifdef _INTERIX
+#include <io.h>
+#else // _INTERIX
 #include <unistd.h>
+#endif // ! _INTERIX
+
 #include <fcntl.h>
 #include <cstdlib>
 #include <cstdio> // used to define EOF

eo/src/utils/eoStat.h

@@ -38,7 +38,7 @@ Contact: http://eodev.sourceforge.net
 #include <utils/eoParam.h>
 #include <eoPop.h>
 #include <utils/eoMonitor.h>
-#include <utils/eoCheckPoint.h>
+//#include <utils/eoCheckPoint.h>
 
 /** @defgroup Stats Statistics computation
  *
@@ -435,21 +435,27 @@ public:
 
     virtual void operator()( const eoPop<EOT> & _pop ) 
     {
-        eoPop<EOT> pop = _pop;
+        if( _pop.size() == 0 ) {
+            // how to implement value() = 0 ?
 
-        unsigned int quartile = pop.size()/4;
+        } else {
-        std::nth_element( pop.begin(), pop.begin()+quartile*1, pop.end() );
+            eoPop<EOT> pop = _pop;
-        typename EOT::Fitness Q1 = pop[quartile].fitness();
-        
-        std::nth_element( pop.begin(), pop.begin()+quartile*3, pop.end() );
-        typename EOT::Fitness Q3 = pop[quartile*3].fitness();
 
-        value() = Q1 - Q3;
+            unsigned int quartile = pop.size()/4;
+            std::nth_element( pop.begin(), pop.begin()+quartile*1, pop.end() );
+            typename EOT::Fitness Q1 = pop[quartile].fitness();
+            
+            std::nth_element( pop.begin(), pop.begin()+quartile*3, pop.end() );
+            typename EOT::Fitness Q3 = pop[quartile*3].fitness();
+
+            value() = Q1 - Q3;
+        }
     }
   
     virtual std::string className(void) const { return "eoInterquartileRangeStat"; }
 };
-
+/** @example t-eoIQRStat.cpp
+ */
 
 /** Compute the average size of indivudals over the population
  *

eo/src/utils/eoUniformInit.h

@@ -29,11 +29,10 @@
  * eoRndGenerators, we might as well have these directly written without
  * overhead
 
-@classes:  
+@class eoUniformInit     uniform initialization for doubles, floats, ints, ...
-  eoUniformInit     uniform initialization for doubles, floats, ints, ...
+@class eoBooleanInit     biased init for booleans
-  eoBooleanInit     biased init for booleans
+@class eoNormalInit      normal intialization for doubles and floats
-  eoNormalInit      normal intialization for doubles and floats
+@class eoNegExpInit      negative exponential distributions    "
-  eoNegExpInit      negative exponential distributions    "
 */
 
 #ifndef eoUniformInit_h

eo/test/CMakeLists.txt

@@ -25,8 +25,6 @@ LINK_DIRECTORIES(${EO_BINARY_DIR}/lib)
 ######################################################################################
 
 SET (TEST_LIST
-  t-eoParetoFitness
-  t-eoPareto
   t-eofitness
   t-eoRandom
   t-eobin
@@ -65,8 +63,8 @@ SET (TEST_LIST
   t-eoSyncEasyPSO
   t-eoOrderXover
   t-eoExtendedVelocity
-  # t-eoFrontSorter
   t-eoLogger
+  t-eoIQRStat
   )
 
 

eo/test/t-eoIQRStat.cpp

@@ -0,0 +1,69 @@
+
+#include <eo>
+#include <es.h>
+#include <utils/eoStat.h>
+
+#include "real_value.h"
+
+typedef eoReal<eoMinimizingFitness> realVec;
+
+double test( eoPop<realVec>& pop, double target_value )
+{
+    eoEvalFuncPtr<realVec, double, const std::vector<double>&> eval( real_value );
+
+    eoPopLoopEval<realVec> pop_eval(eval);
+
+    pop_eval(pop,pop);
+
+    eoInterquartileRangeStat<realVec> iqr_stat(0.0, "IQR");
+
+    iqr_stat( pop );
+
+    std::cout << iqr_stat.longName() << "=" << iqr_stat.value() << " should be " << target_value << std::endl;
+
+    return iqr_stat.value();
+}
+
+int main()
+{
+    eoPop<realVec> pop;
+
+    // fixed test
+    realVec sol1(2,-1);
+    realVec sol2(2,-1);
+    realVec sol3(2,1);
+    realVec sol4(2,1);
+    pop.push_back( sol1 );
+    pop.push_back( sol2 );
+    pop.push_back( sol3 );
+    pop.push_back( sol4 );
+    // on the sphere function everyone has the same fitness of 1
+    if( test(pop, 0) != 0 ) {
+        exit(1);
+    }
+
+    pop.erase(pop.begin(),pop.end());
+
+    // fixed test
+    sol1 = realVec(2,0);
+    sol2 = realVec(2,0);
+    sol3 = realVec(2,1);
+    sol4 = realVec(2,1);
+    pop.push_back( sol1 );
+    pop.push_back( sol2 );
+    pop.push_back( sol3 );
+    pop.push_back( sol4 );
+    if( test(pop, 1) != 1 ) {
+        exit(1);
+    }
+
+    // test on a random normal distribution
+    eoNormalGenerator<double> normal(1,rng);
+    eoInitFixedLength<realVec> init_N(2, normal);
+    pop = eoPop<realVec>( 1000000, init_N );
+    double iqr = test(pop, 1.09);
+    if( iqr < 1.08 || iqr > 1.11 ) {
+        exit(1);
+    }
+}
+