Added new files to the brew, mainly distance and new-op-interface related
This commit is contained in:
jmerelo
parent
472898871c
commit
7db1492943
40 changed files with 2490 additions and 992 deletions
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@ -17,7 +17,36 @@ LDADDS = $(top_builddir)/src/libeo.a
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness \
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t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA\
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t-eoNonUniform t-eoUniform t-eoRandom t-parser t-eoESFull t-eoESOps\
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t-eoAtomOps t-selectOne
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t-eoAtomOps t-selectOne t-eoaltbreeder t-eoGeneralOps t-eoGOpSel \
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t-eoVector
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###############################################################################
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t_eoVector_SOURCES = t-eoVector.cpp
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t_eoVector_DEPENDENCIES = $(DEPS)
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t_eoVector_LDFLAGS = -lm
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t_eoVector_LDADD = $(LDADDS)
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###############################################################################
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t_eoGOpSel_SOURCES = t-eoGOpSel.cpp
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t_eoGOpSel_DEPENDENCIES = $(DEPS)
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t_eoGOpSel_LDFLAGS = -lm
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t_eoGOpSel_LDADD = $(LDADDS)
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###############################################################################
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t_eoGeneralOps_SOURCES = t-eoGeneralOps.cpp
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t_eoGeneralOps_DEPENDENCIES = $(DEPS)
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t_eoGeneralOps_LDFLAGS = -lm
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t_eoGeneralOps_LDADD = $(LDADDS)
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###############################################################################
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t_eoaltbreeder_SOURCES = t-eoaltbreeder.cpp
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t_eoaltbreeder_DEPENDENCIES = $(DEPS)
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t_eoaltbreeder_LDFLAGS = -lm
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t_eoaltbreeder_LDADD = $(LDADDS)
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###############################################################################
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@ -1,4 +1,4 @@
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# Makefile.in generated automatically by automake 1.4 from Makefile.am
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# Makefile.in generated automatically by automake 1.4a from Makefile.am
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# Copyright (C) 1994, 1995-8, 1999 Free Software Foundation, Inc.
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# This Makefile.in is free software; the Free Software Foundation
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@ -49,9 +49,10 @@ AUTOMAKE = @AUTOMAKE@
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AUTOHEADER = @AUTOHEADER@
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INSTALL = @INSTALL@
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INSTALL_PROGRAM = @INSTALL_PROGRAM@ $(AM_INSTALL_PROGRAM_FLAGS)
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INSTALL_PROGRAM = @INSTALL_PROGRAM@
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INSTALL_DATA = @INSTALL_DATA@
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INSTALL_SCRIPT = @INSTALL_SCRIPT@
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INSTALL_STRIP_FLAG =
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transform = @program_transform_name@
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NORMAL_INSTALL = :
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@ -72,9 +73,9 @@ LN_S = @LN_S@
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MAINT = @MAINT@
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MAKEINFO = @MAKEINFO@
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NM = @NM@
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OBJDUMP = @OBJDUMP@
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PACKAGE = @PACKAGE@
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RANLIB = @RANLIB@
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USE_SYMBOL_UNDERSCORE = @USE_SYMBOL_UNDERSCORE@
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VERSION = @VERSION@
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DEPS = $(top_builddir)/src/libeo.a
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@ -87,9 +88,37 @@ LDADDS = $(top_builddir)/src/libeo.a
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###############################################################################
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA t-eoNonUniform t-eoUniform t-eoRandom t-parser t-eoESFull t-eoESOps t-eoAtomOps t-selectOne
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA t-eoNonUniform t-eoUniform t-eoRandom t-parser t-eoESFull t-eoESOps t-eoAtomOps t-selectOne t-eoaltbreeder t-eoGeneralOps t-eoGOpSel t-eoVector
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###############################################################################
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t_eoVector_SOURCES = t-eoVector.cpp
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t_eoVector_DEPENDENCIES = $(DEPS)
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t_eoVector_LDFLAGS = -lm
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t_eoVector_LDADD = $(LDADDS)
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###############################################################################
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t_eoGOpSel_SOURCES = t-eoGOpSel.cpp
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t_eoGOpSel_DEPENDENCIES = $(DEPS)
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t_eoGOpSel_LDFLAGS = -lm
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t_eoGOpSel_LDADD = $(LDADDS)
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###############################################################################
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t_eoGeneralOps_SOURCES = t-eoGeneralOps.cpp
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t_eoGeneralOps_DEPENDENCIES = $(DEPS)
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t_eoGeneralOps_LDFLAGS = -lm
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t_eoGeneralOps_LDADD = $(LDADDS)
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###############################################################################
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t_eoaltbreeder_SOURCES = t-eoaltbreeder.cpp
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t_eoaltbreeder_DEPENDENCIES = $(DEPS)
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t_eoaltbreeder_LDFLAGS = -lm
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t_eoaltbreeder_LDADD = $(LDADDS)
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###############################################################################
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t_selectOne_SOURCES = t-selectOne.cpp
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@ -250,6 +279,10 @@ t_eoESFull_OBJECTS = t-eoESFull.o
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t_eoESOps_OBJECTS = t-eoESOps.o
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t_eoAtomOps_OBJECTS = t-eoAtomOps.o
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t_selectOne_OBJECTS = t-selectOne.o
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t_eoaltbreeder_OBJECTS = t-eoaltbreeder.o
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t_eoGeneralOps_OBJECTS = t-eoGeneralOps.o
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t_eoGOpSel_OBJECTS = t-eoGOpSel.o
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t_eoVector_OBJECTS = t-eoVector.o
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CXXFLAGS = @CXXFLAGS@
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CXXCOMPILE = $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
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LTCXXCOMPILE = $(LIBTOOL) --mode=compile $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
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@ -267,8 +300,8 @@ DISTFILES = $(DIST_COMMON) $(SOURCES) $(HEADERS) $(TEXINFOS) $(EXTRA_DIST)
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TAR = gtar
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GZIP_ENV = --best
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SOURCES = $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES) $(t_eo2dVector_SOURCES) $(t_eogeneration_SOURCES) $(t_eoEasyEA_SOURCES) $(t_eoNonUniform_SOURCES) $(t_eoUniform_SOURCES) $(t_eoRandom_SOURCES) $(t_parser_SOURCES) $(t_eoESFull_SOURCES) $(t_eoESOps_SOURCES) $(t_eoAtomOps_SOURCES) $(t_selectOne_SOURCES)
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OBJECTS = $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS) $(t_eo2dVector_OBJECTS) $(t_eogeneration_OBJECTS) $(t_eoEasyEA_OBJECTS) $(t_eoNonUniform_OBJECTS) $(t_eoUniform_OBJECTS) $(t_eoRandom_OBJECTS) $(t_parser_OBJECTS) $(t_eoESFull_OBJECTS) $(t_eoESOps_OBJECTS) $(t_eoAtomOps_OBJECTS) $(t_selectOne_OBJECTS)
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SOURCES = $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES) $(t_eo2dVector_SOURCES) $(t_eogeneration_SOURCES) $(t_eoEasyEA_SOURCES) $(t_eoNonUniform_SOURCES) $(t_eoUniform_SOURCES) $(t_eoRandom_SOURCES) $(t_parser_SOURCES) $(t_eoESFull_SOURCES) $(t_eoESOps_SOURCES) $(t_eoAtomOps_SOURCES) $(t_selectOne_SOURCES) $(t_eoaltbreeder_SOURCES) $(t_eoGeneralOps_SOURCES) $(t_eoGOpSel_SOURCES) $(t_eoVector_SOURCES)
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OBJECTS = $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS) $(t_eo2dVector_OBJECTS) $(t_eogeneration_OBJECTS) $(t_eoEasyEA_OBJECTS) $(t_eoNonUniform_OBJECTS) $(t_eoUniform_OBJECTS) $(t_eoRandom_OBJECTS) $(t_parser_OBJECTS) $(t_eoESFull_OBJECTS) $(t_eoESOps_OBJECTS) $(t_eoAtomOps_OBJECTS) $(t_selectOne_OBJECTS) $(t_eoaltbreeder_OBJECTS) $(t_eoGeneralOps_OBJECTS) $(t_eoGOpSel_OBJECTS) $(t_eoVector_OBJECTS)
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all: all-redirect
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.SUFFIXES:
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@ -403,6 +436,22 @@ t-eoAtomOps: $(t_eoAtomOps_OBJECTS) $(t_eoAtomOps_DEPENDENCIES)
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t-selectOne: $(t_selectOne_OBJECTS) $(t_selectOne_DEPENDENCIES)
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@rm -f t-selectOne
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$(CXXLINK) $(t_selectOne_LDFLAGS) $(t_selectOne_OBJECTS) $(t_selectOne_LDADD) $(LIBS)
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t-eoaltbreeder: $(t_eoaltbreeder_OBJECTS) $(t_eoaltbreeder_DEPENDENCIES)
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@rm -f t-eoaltbreeder
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$(CXXLINK) $(t_eoaltbreeder_LDFLAGS) $(t_eoaltbreeder_OBJECTS) $(t_eoaltbreeder_LDADD) $(LIBS)
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t-eoGeneralOps: $(t_eoGeneralOps_OBJECTS) $(t_eoGeneralOps_DEPENDENCIES)
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@rm -f t-eoGeneralOps
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$(CXXLINK) $(t_eoGeneralOps_LDFLAGS) $(t_eoGeneralOps_OBJECTS) $(t_eoGeneralOps_LDADD) $(LIBS)
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t-eoGOpSel: $(t_eoGOpSel_OBJECTS) $(t_eoGOpSel_DEPENDENCIES)
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@rm -f t-eoGOpSel
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$(CXXLINK) $(t_eoGOpSel_LDFLAGS) $(t_eoGOpSel_OBJECTS) $(t_eoGOpSel_LDADD) $(LIBS)
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t-eoVector: $(t_eoVector_OBJECTS) $(t_eoVector_DEPENDENCIES)
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@rm -f t-eoVector
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$(CXXLINK) $(t_eoVector_LDFLAGS) $(t_eoVector_OBJECTS) $(t_eoVector_LDADD) $(LIBS)
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.cc.o:
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$(CXXCOMPILE) -c $<
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.cc.lo:
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@ -449,7 +498,7 @@ distdir: $(DISTFILES)
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@for file in $(DISTFILES); do \
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d=$(srcdir); \
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if test -d $$d/$$file; then \
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cp -pr $$/$$file $(distdir)/$$file; \
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cp -pr $$d/$$file $(distdir)/$$file; \
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else \
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test -f $(distdir)/$$file \
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|| ln $$d/$$file $(distdir)/$$file 2> /dev/null \
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@ -478,7 +527,7 @@ uninstall: uninstall-am
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all-am: Makefile $(PROGRAMS)
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all-redirect: all-am
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install-strip:
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$(MAKE) $(AM_MAKEFLAGS) AM_INSTALL_PROGRAM_FLAGS=-s install
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$(MAKE) $(AM_MAKEFLAGS) INSTALL_STRIP_FLAG=-s install
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installdirs:
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@ -1,18 +1,18 @@
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#include <eo>
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//-----------------------------------------------------------------------------
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typedef eoBin<float> Chrom;
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/** Just a simple function that takes binary value of a chromosome and sets
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the fitnes.
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@param _chrom A binary chromosome
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*/
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void binary_value(Chrom& _chrom)
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{
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float sum = 0;
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for (unsigned i = 0; i < _chrom.size(); i++)
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if (_chrom[i])
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#include <eo>
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//-----------------------------------------------------------------------------
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typedef eoBin<float> Chrom;
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/** Just a simple function that takes binary value of a chromosome and sets
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the fitnes.
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@param _chrom A binary chromosome
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*/
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float binary_value(const Chrom& _chrom)
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{
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float sum = 0;
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for (unsigned i = 0; i < _chrom.size(); i++)
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if (_chrom[i])
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sum += pow(2, _chrom.size() - i - 1);
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_chrom.fitness(sum);
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}
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return sum;
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}
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@ -1,23 +1,20 @@
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#include <eoESFullChrom.h>
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//-----------------------------------------------------------------------------
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typedef vector<double> Vec;
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/** Just a simple function that takes an eoVector<float> and sets the fitnes
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to -sphere (we'll see later how to minimize rather than maximize!)
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@param _ind A floatingpoint vector
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*/
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float the_real_value(Vec& _ind)
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{
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double sum = 0; /* compute in double format, even if return a float */
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for (unsigned i = 0; i < _ind.size(); i++)
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sum += _ind[i] * _ind[i];
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return -sum;
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}
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typedef eoESFullChrom<float> Ind;
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void real_value(Ind & _ind) {
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_ind.fitness( the_real_value(_ind) );
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}
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#include <eoESFullChrom.h>
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//-----------------------------------------------------------------------------
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typedef vector<double> Vec;
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/** Just a simple function that takes an eoVector<float> and sets the fitnes
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to -sphere (we'll see later how to minimize rather than maximize!)
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@param _ind A floatingpoint vector
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*/
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float real_value(const eoESFullChrom<float>& _ind)
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{
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double sum = 0; /* compute in double format, even if return a float */
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for (unsigned i = 0; i < _ind.size(); i++)
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sum += _ind[i] * _ind[i];
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return -sum;
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}
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@ -1,33 +1,66 @@
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// Program to test several EO-ES features
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#ifdef _MSC_VER
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#pragma warning(disable:4786)
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#endif
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#include <string>
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#include <iostream>
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#include <iterator>
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using namespace std;
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// Operators we are going to test
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#include <eoAtomCreep.h>
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#include <eoAtomBitFlip.h>
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#include <eoAtomRandom.h>
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#include <eoAtomMutation.h>
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// Several EOs
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#include <eoString.h>
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main(int argc, char *argv[]) {
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eoString<float> aString("123456");
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eoAtomCreep<char> creeper;
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eoAtomMutation< eoString<float> > mutator( creeper, 0.5 );
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cout << "Before aString " << aString;
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mutator( aString);
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cout << " after mutator " << aString;
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return 0; // to avoid VC++ complaints
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}
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/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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t-eoAtomOps.cpp
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Program that tests the atomic operator classes
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(c) GeNeura Team, 1999
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This program is free software; you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by
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the Free Software Foundation; either version 2 of the License, or
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(at your option) any later version.
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This program is distributed in the hope that it will be useful,
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but WITHOUT ANY WARRANTY; without even the implied warranty of
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MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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*/
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//-----------------------------------------------------------------------------//
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#ifdef _MSC_VER
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#pragma warning(disable:4786)
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#endif
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#include <string>
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#include <iostream>
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#include <iterator>
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using namespace std;
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// Operators we are going to test
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#include <eoAtomCreep.h>
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#include <eoAtomBitFlip.h>
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#include <eoAtomRandom.h>
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#include <eoAtomMutation.h>
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// Several EOs
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#include <eoString.h>
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// RNGs
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#include <eoNegExp.h>
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main(int argc, char *argv[]) {
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eoString<float> aString("123456");
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eoAtomCreep<char> creeper;
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eoAtomMutation< eoString<float> > mutator( creeper, 0.5 );
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eoNegExp<char> charNE( 2 );
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eoAtomRandom<char> randomer( charNE );
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eoAtomMutation< eoString<float> > mutator2 ( randomer, 0.5 );
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cout << "Before aString " << aString << endl;
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mutator( aString);
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cout << " after mutator " << aString << endl;
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mutator2( aString);
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cout << " after mutator2 " << aString << endl;;
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return 0; // to avoid VC++ complaints
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}
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107
eo/test/t-eoGOpSel.cpp
Normal file
107
eo/test/t-eoGOpSel.cpp
Normal file
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@ -0,0 +1,107 @@
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/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
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t-eoGOpSel.cpp
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Testing proportional operator selectors
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(c) Maarten Keijzer and GeNeura Team, 2000
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This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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||||
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||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
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*/
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//-----------------------------------------------------------------------------//
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// to avoid long name warnings
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#pragma warning(disable:4786)
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|
||||
#include "eoBin.h" // eoBin, eoPop, eoBreeder
|
||||
#include <eoPop.h>
|
||||
#include <eoBitOp.h>
|
||||
#include <eoProportionalGOpSel.h>
|
||||
//#include <eoAltBreeder.h>
|
||||
|
||||
|
||||
// Fitness evaluation
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 4;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
chrom.fitness(binary_value(chrom));
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
|
||||
//Create the proportional operator selector and add the
|
||||
// two operators creatd above to it.
|
||||
|
||||
eoProportionalGOpSel<Chrom > propSel;
|
||||
propSel.addOp(bitflip, 0.5);
|
||||
propSel.addOp(xover, 0.5);
|
||||
for ( i = 0; i < POP_SIZE; i ++ ) {
|
||||
eoGeneralOp<Chrom>& foo = propSel.selectOp();
|
||||
cout << foo.nInputs() << " "
|
||||
<< foo.nOutputs() << endl;
|
||||
}
|
||||
|
||||
// eoAltBreeder<Chrom> breeder( propSel );
|
||||
|
||||
|
||||
|
||||
// breeder(pop);
|
||||
|
||||
// eoSequentialOpSelector<Chrom, eoAltBreeder<Chrom>::outIt > seqSel;
|
||||
|
||||
// eoAltBreeder<Chrom> breeder2( seqSel );
|
||||
// seqSel.addOp(bitflip, 0.25);
|
||||
// seqSel.addOp(xover, 0.75);
|
||||
|
||||
// breeder2(pop);
|
||||
|
||||
// // reevaluation of fitness
|
||||
// for_each(pop.begin(), pop.end(), binary_value);
|
||||
|
||||
// cout << "new population:" << endl;
|
||||
// for (i = 0; i < pop.size(); ++i)
|
||||
// cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
71
eo/test/t-eoGeneralOps.cpp
Normal file
71
eo/test/t-eoGeneralOps.cpp
Normal file
|
|
@ -0,0 +1,71 @@
|
|||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
t-eoGeneralOps.cpp
|
||||
Program that tests the General operator interface, and the wrappers
|
||||
for monary and unary operators.
|
||||
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
*/
|
||||
|
||||
//-----------------------------------------------------------------------------//
|
||||
|
||||
#ifdef _MSC_VER
|
||||
#pragma warning(disable:4786)
|
||||
#endif
|
||||
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <iterator>
|
||||
|
||||
using namespace std;
|
||||
|
||||
// Operators we are going to test
|
||||
#include <eoAtomCreep.h>
|
||||
#include <eoAtomBitFlip.h>
|
||||
#include <eoAtomRandom.h>
|
||||
#include <eoAtomMutation.h>
|
||||
|
||||
// Several EOs
|
||||
#include <eoString.h>
|
||||
|
||||
// generalOp we are testing
|
||||
#include <eoGeneralOp.h>
|
||||
|
||||
main(int argc, char *argv[]) {
|
||||
eoString<float> aString("123456");
|
||||
eoAtomCreep<char> creeper;
|
||||
eoAtomMutation< eoString<float> > mutator( creeper, 0.5 );
|
||||
|
||||
eoWrappedMonOp< eoString<float> > wCreeper( mutator );
|
||||
cout << "Before aString " << aString;
|
||||
mutator( aString);
|
||||
cout << " after mutator " << aString;
|
||||
|
||||
// Test now the alternative interface
|
||||
eoPop< eoString<float> > vIn, vOut;
|
||||
insert_iterator<eoPop<eoString<float> > > ins( vOut, vOut.begin() );
|
||||
vIn.push_back( aString );
|
||||
wCreeper( vIn.begin(), ins );
|
||||
|
||||
cout << endl << "Before " << vIn[0] << endl << " after " << vOut[0] << endl;;
|
||||
|
||||
return 0; // to avoid VC++ complaints
|
||||
}
|
||||
|
||||
|
|
@ -1,31 +1,30 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
/*-----------------------------------------------------------------------------
|
||||
* t-eoRandom
|
||||
* Testing program for the eoRNG class
|
||||
* (c) GeNeura Team, 1999
|
||||
t-eoRandom.cpp
|
||||
Test program for random generator
|
||||
|
||||
This library is free software; you can redistribute it and/or
|
||||
modify it under the terms of the GNU General Public
|
||||
License as published by the Free Software Foundation; either
|
||||
version 2 of the License, or (at your option) any later version.
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This library is distributed in the hope that it will be useful,
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
||||
Lesser General Public License for more details.
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public
|
||||
License along with this library; if not, write to the Free Software
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
*/
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
#include <eoUniform.h> // eoBin
|
||||
|
|
|
|||
57
eo/test/t-eoVector.cpp
Normal file
57
eo/test/t-eoVector.cpp
Normal file
|
|
@ -0,0 +1,57 @@
|
|||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
t-eoVectpr.cpp
|
||||
This program tests vector-like chromosomes
|
||||
(c) GeNeura Team, 1999, 2000
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
|
||||
#include <eoUniform.h>
|
||||
#include <eoVector.h> // eoVector
|
||||
#include <eo1dWDistance.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoVector<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned SIZE = 4;
|
||||
unsigned i, j;
|
||||
eoUniform<Chrom::Type> uniform(-1,1);
|
||||
|
||||
Chrom chrom1(SIZE,uniform), chrom2( SIZE, uniform);
|
||||
|
||||
cout << "chrom1: " << chrom1 << endl <<
|
||||
"chrom2: " << chrom2 << endl;
|
||||
|
||||
eo1dWDistance< float, float > chromDist( chrom1 );
|
||||
cout << "Distance from chrom1 to chrom2 " << chromDist.distance( chrom2 ) << endl;
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
98
eo/test/t-eoaltbreeder.cpp
Normal file
98
eo/test/t-eoaltbreeder.cpp
Normal file
|
|
@ -0,0 +1,98 @@
|
|||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
t-eoaltbreeder.cpp
|
||||
Extensive esting of the eoAltBreeder class
|
||||
|
||||
(c) Maarten Keijzer and GeNeura Team, 2000
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
*/
|
||||
|
||||
//-----------------------------------------------------------------------------//
|
||||
|
||||
// to avoid long name warnings
|
||||
#pragma warning(disable:4786)
|
||||
|
||||
#include "eoBin.h" // eoBin, eoPop, eoBreeder
|
||||
#include <eoPop.h>
|
||||
#include <eoBitOp.h>
|
||||
#include <eoProportionalOpSel.h>
|
||||
#include <eoAltBreeder.h>
|
||||
|
||||
|
||||
// Fitness evaluation
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 4;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
|
||||
eoProportionalOpSelector<Chrom, eoAltBreeder<Chrom>::outIt > propSel;
|
||||
|
||||
eoAltBreeder<Chrom> breeder( propSel );
|
||||
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
breeder(pop);
|
||||
|
||||
eoSequentialOpSelector<Chrom, eoAltBreeder<Chrom>::outIt > seqSel;
|
||||
|
||||
eoAltBreeder<Chrom> breeder2( seqSel );
|
||||
seqSel.addOp(bitflip, 0.25);
|
||||
seqSel.addOp(xover, 0.75);
|
||||
|
||||
breeder2(pop);
|
||||
|
||||
// reevaluation of fitness
|
||||
for_each(pop.begin(), pop.end(), binary_value);
|
||||
|
||||
cout << "new population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
@ -1,24 +1,23 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eobin.cpp
|
||||
// This program test the the binary cromosomes and several genetic operators
|
||||
// (c) GeNeura Team, 1999
|
||||
/*
|
||||
This library is free software; you can redistribute it and/or
|
||||
modify it under the terms of the GNU General Public
|
||||
License as published by the Free Software Foundation; either
|
||||
version 2 of the License, or (at your option) any later version.
|
||||
t-eobin.cpp
|
||||
This program tests the the binary cromosomes and several genetic operators
|
||||
(c) GeNeura Team, 1999
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This library is distributed in the hope that it will be useful,
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
||||
Lesser General Public License for more details.
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public
|
||||
License along with this library; if not, write to the Free Software
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
*/
|
||||
|
|
|
|||
|
|
@ -1,82 +1,145 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eogeneration.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
// to avoid long name warnings
|
||||
#pragma warning(disable:4786)
|
||||
|
||||
#include <eo>
|
||||
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 16;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
|
||||
// selection
|
||||
eoLottery<Chrom> lottery;
|
||||
|
||||
// breeder
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
eoProportionalOpSel<Chrom> propSel;
|
||||
eoBreeder<Chrom> breeder( propSel );
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
// replacement
|
||||
eoInclusion<Chrom> inclusion;
|
||||
|
||||
// Evaluation
|
||||
eoEvalFuncPtr<Chrom> eval( binary_value );
|
||||
|
||||
// GA generation
|
||||
eoGeneration<Chrom> generation(lottery, breeder, inclusion, eval);
|
||||
|
||||
// evolution
|
||||
unsigned g = 0;
|
||||
do {
|
||||
try
|
||||
{
|
||||
generation(pop);
|
||||
}
|
||||
catch (exception& e)
|
||||
{
|
||||
cout << "exception: " << e.what() << endl;;
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
|
||||
cout << "pop[" << ++g << "]" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
} while (pop[0].fitness() < pow(2.0, CHROM_SIZE) - 1);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
t-eogeneration.cpp
|
||||
Testing the eoGeneration classes, and classes related to it
|
||||
|
||||
(c) GeNeura Team, 1999, 2000
|
||||
|
||||
This program is free software; you can redistribute it and/or modify
|
||||
it under the terms of the GNU General Public License as published by
|
||||
the Free Software Foundation; either version 2 of the License, or
|
||||
(at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||||
GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License
|
||||
along with this program; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
|
||||
*/
|
||||
|
||||
//-----------------------------------------------------------------------------//
|
||||
|
||||
|
||||
// to avoid long name warnings
|
||||
#ifdef _MSC_VER
|
||||
#pragma warning(disable:4786)
|
||||
#endif
|
||||
|
||||
#include <eoGeneration.h>
|
||||
#include <eoEvalFuncPtrCnt.h>
|
||||
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 16;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
// Evaluation
|
||||
eoEvalFuncPtr<Chrom> eval( binary_value );
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
eval(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
|
||||
// selection
|
||||
eoLottery<Chrom> lottery;
|
||||
|
||||
// breeder
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
eoProportionalOpSel<Chrom> propSel;
|
||||
eoBreeder<Chrom> breeder( propSel );
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
// replacement
|
||||
eoInclusion<Chrom> inclusion;
|
||||
|
||||
|
||||
|
||||
// GA generation
|
||||
eoGeneration<Chrom> generation(lottery, breeder, inclusion, eval);
|
||||
|
||||
// evolution
|
||||
unsigned g = 0;
|
||||
do {
|
||||
try
|
||||
{
|
||||
generation(pop);
|
||||
}
|
||||
catch (exception& e)
|
||||
{
|
||||
cout << "exception: " << e.what() << endl;;
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
|
||||
cout << "pop[" << ++g << "]" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
} while (pop[0].fitness() < pow(2.0, CHROM_SIZE) - 1);
|
||||
|
||||
// Try again, with a "counted" evaluation function
|
||||
// GA generation
|
||||
// Evaluation
|
||||
eoEvalFuncPtrCnt<Chrom> eval2( binary_value );
|
||||
eoPop<Chrom> pop2;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
eval2(chrom);
|
||||
pop2.push_back(chrom);
|
||||
}
|
||||
eoGeneration<Chrom> generation2(lottery, breeder, inclusion, eval2);
|
||||
|
||||
// evolution
|
||||
do {
|
||||
try
|
||||
{
|
||||
generation2(pop2);
|
||||
}
|
||||
catch (exception& e)
|
||||
{
|
||||
cout << "exception: " << e.what() << endl;;
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
|
||||
cout << "pop[" << ++g << "]" << endl;
|
||||
for (i = 0; i < pop2.size(); ++i)
|
||||
cout << "\t" << pop2[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
} while (pop2[0].fitness() < pow(2.0, CHROM_SIZE) - 1);
|
||||
|
||||
cout << "Number of evaluations " << eval2.getNumOfEvaluations() << endl;
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
Reference in a new issue