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Handle including from contrib/MGE nicely.

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kuepper 2005-10-06 17:22:40 +00:00
commit 7c3702f6a6
7 changed files with 145 additions and 124 deletions
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172
eo/contrib/MGE/eoVirus.h
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@ -1,36 +1,36 @@
/*
eoVirus.h
(c) GeNeura Team 2001, Marc Schoenauer 2000
/* eoVirus.h
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
(c) GeNeura Team 2001, Marc Schoenauer 2000
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
This library is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation; either version 2 of the
License, or (at your option) any later version.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
This library is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
CVS Info: $Date: 2004-12-23 15:29:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/contrib/MGE/eoVirus.h,v 1.3 2004-12-23 15:29:07 kuepper Exp $ $Author: kuepper $
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
*/
#ifndef eoVirus_h
#define eoVirus_h
//-----------------------------------------------------------------------------
#include <iostream>
#include <functional>
#include <string>
#include <vector>
#include <iostream> // ostream, istream
#include <functional> // bind2nd
#include <string> // std::string
#include <ga/eoBit.h>
#include "ga/eoBit.h"
/**
\defgroup bitstring
@ -38,13 +38,15 @@ CVS Info: $Date: 2004-12-23 15:29:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs
Various functions for a bitstring representation
*/
/** eoBit: implementation of bitstring chromosome.
\class eoBit eoBit.h ga/eoBit.h
\ingroup bitstring
* based on STL's vector<bool> specialization.
/** Implementation of bitstring chromosome.
@class eoBit eoBit.h ga/eoBit.h
@ingroup bitstring
Based on STL's vector<bool> specialization.
*/
template <class FitT>
class eoVirus: public eoBit<FitT>
class eoVirus : public eoBit<FitT>
{
public:
@ -53,64 +55,67 @@ public:
using eoBit<FitT>::size;
/**
* (Default) Constructor.
* @param size Size of the binary std::string.
*/
eoVirus(unsigned _size = 0, bool _value = false, bool _virValue = false):
eoBit<FitT>(_size, _value), virus( _size, _virValue) {}
/** (Default) Constructor
/// My class name.
virtual std::string className() const {
return "eoVirus";
}
@param size Size of the binary std::string.
*/
eoVirus(unsigned _size = 0, bool _value = false, bool _virValue = false):
eoBit<FitT>(_size, _value), virus( _size, _virValue) {}
/// Access to virus features
void virResize( unsigned _i ) {
virus.resize(_i );
}
/// Access to virus features
bool virusBit( unsigned _i ) const {
return virus[_i];
}
/// Change virus features
void virusBitSet( unsigned _i, bool _bit ) {
virus[_i ] = _bit;
}
/**
* To print me on a stream.
* @param os The ostream.
*/
virtual void printOn(std::ostream& os) const {
EO<FitT>::printOn(os);
os << ' ';
os << size() << ' ';
std::copy(begin(), end(), std::ostream_iterator<bool>(os));
std::cout << std::endl;
std::copy(virus.begin(), virus.end(), std::ostream_iterator<bool>(os));
}
/**
* To read me from a stream.
* @param is The istream.
*/
virtual void readFrom(std::istream& is){
eoBit<FitT>::readFrom(is);
unsigned s;
is >> s;
std::string bits;
is >> bits;
if (is) {
virus.resize(bits.size());
std::transform(bits.begin(), bits.end(), virus.begin(),
std::bind2nd(std::equal_to<char>(), '1'));
}
/// My class name
virtual std::string className() const {
return "eoVirus";
}
private:
std::vector<bool> virus;
/// Access to virus features
void virResize( unsigned _i ) {
virus.resize(_i );
}
/// Access to virus features
bool virusBit( unsigned _i ) const {
return virus[_i];
}
/// Change virus features
void virusBitSet( unsigned _i, bool _bit ) {
virus[_i ] = _bit;
}
/** To print me on a stream.
@param os The ostream.
*/
virtual void printOn(std::ostream& os) const {
EO<FitT>::printOn(os);
os << ' ';
os << size() << ' ';
std::copy(begin(), end(), std::ostream_iterator<bool>(os));
std::cout << std::endl;
std::copy(virus.begin(), virus.end(), std::ostream_iterator<bool>(os));
}
/** To read me from a stream.
@param is The istream.
*/
virtual void readFrom(std::istream& is){
eoBit<FitT>::readFrom(is);
unsigned s;
is >> s;
std::string bits;
is >> bits;
if (is) {
virus.resize(bits.size());
std::transform(bits.begin(), bits.end(), virus.begin(),
std::bind2nd(std::equal_to<char>(), '1'));
}
}
private:
std::vector<bool> virus;
};
//-----------------------------------------------------------------------------
@ -119,6 +124,7 @@ public:
// Local Variables:
// coding: iso-8859-1
// mode: C++
// c-file-style: "Stroustrup"
// End: