ParadiesEO cleanup
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kuepper
parent
2ca5ddb186
commit
54a3b8d10e
10 changed files with 0 additions and 351 deletions
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@ -1,17 +0,0 @@
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noinst_PROGRAMS = MasterDistEvalBitEA SlaveDistEvalBitEA
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LIBEO = $(top_builddir)/src/libeo.a
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LIBEOUTILS = $(top_builddir)/src/utils/libeoutils.a
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CXX = $(MPICXX)
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LD = $(MPICXX)
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AM_CXXFLAGS = -I$(top_srcdir)/src
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DEPS = $(LIBEOUTILS) $(LIBEO)
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LIBS = $(LIBEOUTILS) $(LIBEO)
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noinst_HEADERS = binary_value.h
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MasterDistEvalBitEA_SOURCES = MasterDistEvalBitEA.cpp
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SlaveDistEvalBitEA_SOURCES = SlaveDistEvalBitEA.cpp
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@ -1,23 +0,0 @@
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MPICC = mpiCC
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ALL = MasterDistEvalBitEA SlaveDistEvalBitEA
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lesson2 : MasterDistEvalBitEA SlaveDistEvalBitEA
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all : $(ALL)
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clean :
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@/bin/rm $(ALL) *.o *~
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MasterDistEvalBitEA : MasterDistEvalBitEA.o
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$(MPICC) -DPACKAGE=\"eo\" -o MasterDistEvalBitEA MasterDistEvalBitEA.o ../../../src/utils/libeoutils.a ../../../src/libeo.a
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MasterDistEvalBitEA.o : MasterDistEvalBitEA.cpp binary_value.h
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$(MPICC) -DPACKAGE=\"eo\" -I. -I../../../src -c MasterDistEvalBitEA.cpp
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SlaveDistEvalBitEA : SlaveDistEvalBitEA.o
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$(MPICC) -DPACKAGE=\"eo\" -o SlaveDistEvalBitEA SlaveDistEvalBitEA.o ../../../src/utils/libeoutils.a ../../../src/libeo.a
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SlaveDistEvalBitEA.o : SlaveDistEvalBitEA.cpp binary_value.h
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$(MPICC) -DPACKAGE=\"eo\" -I. -I../../../src -c SlaveDistEvalBitEA.cpp
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@ -1,95 +0,0 @@
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#ifdef HAVE_CONFIG_H
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#include <config.h>
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#endif
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#include <iostream>
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#ifdef HAVE_SSTREAM
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#include <sstream>
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#else
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#include <strstream>
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#endif
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#include <paradiseo.h>
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#include <ga.h>
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typedef eoBit<double> Indi ; // A bitstring with fitness double
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#include "binary_value.h"
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using namespace std;
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void main_function(int argc, char **argv) {
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// Some parameters
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const unsigned int SEED = 42 ; // Seed for random number generator
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const unsigned int T_SIZE = 3 ; // Size for tournament selection
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const unsigned int VEC_SIZE = 8 ; // Number of bits in genotypes
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const unsigned int POP_SIZE = 100 ; // Size of population
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const unsigned int MAX_GEN = 20 ; // Maximum number of generation before STOP
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const double P_CROSS = 0.8 ; // Crossover probability
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const double P_MUT = 1.0 ; // Mutation probability
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const double P_MUT_PER_BIT = 0.01 ; // Internal probability for bit-flip mutation
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const double onePointRate = 0.5 ; // Rate for 1-pt Xover
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const double bitFlipRate = 0.5 ; // Rate for bit-flip mutation
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rng.reseed (SEED) ;
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eoEvalFuncPtr <Indi, double, const vector <bool>& > eval (binary_value) ;
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eoUniformGenerator <bool> uGen ;
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eoInitFixedLength <Indi> random (VEC_SIZE, uGen) ;
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eoPop <Indi> pop (POP_SIZE, random) ;
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apply <Indi> (eval, pop) ;
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eoDetTournamentSelect <Indi> selectOne (T_SIZE) ;
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eoSelectPerc<Indi> select (selectOne) ;
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eoGenerationalReplacement <Indi> replace ;
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eo1PtBitXover<Indi> xover1 ;
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eoBitMutation<Indi> mutationBitFlip(P_MUT_PER_BIT) ;
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// The operators are encapsulated into an eoTRansform object
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eoSGATransform<Indi> transform(xover1, P_CROSS, mutationBitFlip, P_MUT);
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eoGenContinue<Indi> genCont (MAX_GEN);
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eoEasyEA<Indi> gga (genCont, eval, select, transform, replace);
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eoListener <Indi> listen (argc, argv) ;
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eoDistEvalEasyEA <Indi> dist_gga (listen, gga, "Mars") ;
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dist_gga (pop) ;
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listen.destroy ("Mars") ;
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// OUTPUT
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// Print (sorted) intial population
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pop.sort();
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cout << "FINAL Population\n" << pop << endl;
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// GENERAL
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}
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// A main that catches the exceptions
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int main(int argc, char **argv)
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{
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try
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{
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main_function(argc, argv);
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}
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catch(exception& e)
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{
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cout << "Exception: " << e.what() << '\n';
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}
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return 1;
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}
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@ -1,51 +0,0 @@
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#ifdef HAVE_CONFIG_H
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#include <config.h>
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#endif
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#include <iostream>
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#include <stdexcept> // runtime_error
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#ifdef HAVE_SSTREAM
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#include <sstream>
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#else
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#include <strstream>
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#endif
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#include <paradiseo.h>
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#include <ga.h>
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typedef eoBit<double> Indi; // A bitstring with fitness double
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#include "binary_value.h"
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using namespace std;
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void main_function(int argc, char **argv) {
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eoEvalFuncPtr <Indi, double, const vector <bool> & > eval (binary_value) ;
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eoListener <Indi> listen (argc, argv) ;
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eoEvaluator <Indi> evaluator ("Mars",
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listen,
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eval) ;
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// Runs
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evaluator () ;
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}
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// A main that catches the exceptions
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int main(int argc, char **argv)
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{
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try
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{
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main_function(argc, argv);
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}
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catch(exception& e)
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{
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cout << "Exception: " << e.what() << '\n';
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}
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return 1;
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}
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#include <eo>
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//-----------------------------------------------------------------------------
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/** Just a simple function that takes binary value of a chromosome and sets
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the fitnes.
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@param _chrom A binary chromosome
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*/
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// INIT
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double binary_value(const std::vector<bool>& _chrom)
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{
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double sum = 0;
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for (unsigned i = 0; i < _chrom.size(); i++)
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sum += _chrom[i];
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return sum;
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}
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@ -1,4 +0,0 @@
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${MACHINE0} 0 ${HOME}/eo/tutorial/ParadisEO/Lesson2/MasterDistEvalBitEA
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${MACHINE0} 1 ${HOME}/eo/tutorial/ParadisEO/Lesson2/SlaveDistEvalBitEA
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${MACHINE1} 1 ${HOME}/eo/tutorial/ParadisEO/Lesson2/SlaveDistEvalBitEA
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${MACHINE2} 1 ${HOME}/eo/tutorial/ParadisEO/Lesson2/SlaveDistEvalBitEA
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@ -1,96 +0,0 @@
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#ifdef HAVE_CONFIG_H
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#include <config.h>
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#endif
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#include <iostream>
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#include <stdexcept> // runtime_error
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#ifdef HAVE_SSTREAM
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#include <sstream>
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#else
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#include <strstream>
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#endif
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#include <eo>
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#include <ga.h>
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typedef eoBit<double> Indi;
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#include "binary_value.h"
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using namespace std;
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void main_function(int argc, char **argv)
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{
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const unsigned int SEED = 42;
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const unsigned int VEC_SIZE = 8;
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const unsigned int POP_SIZE = 25;
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const unsigned int MAX_GEN = 100;
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const double P_MUT_PER_BIT = 0.01;
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rng.reseed(SEED);
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eoEvalFuncPtr<Indi, double, const vector<bool>& > eval( binary_value );
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eoUniformGenerator<bool> uGen;
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eoInitFixedLength<Indi> random(VEC_SIZE, uGen);
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eoPop<Indi> pop(POP_SIZE, random);
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apply<Indi>(eval, pop);
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pop.sort();
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cout << "Initial Population" << endl;
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cout << pop;
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eo1PtBitXover<Indi> xover1;
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eoBitMutation<Indi> mutationBitFlip(P_MUT_PER_BIT);
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eoGenContinue<Indi> genCont(MAX_GEN);
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eoBestSelect <Indi> select ;
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eoToricCellularEasyEA <Indi> gga (genCont,
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eval,
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select,
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xover1,
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mutationBitFlip,
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select,
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select) ;
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cout << "\n Here we go\n\n";
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gga(pop);
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pop.sort();
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cout << "FINAL Population\n" << pop << endl;
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}
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// A main that catches the exceptions
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int main(int argc, char **argv)
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{
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#ifdef _MSC_VER
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// rng.reseed(42);
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int flag = _CrtSetDbgFlag(_CRTDBG_LEAK_CHECK_DF);
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flag |= _CRTDBG_LEAK_CHECK_DF;
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_CrtSetDbgFlag(flag);
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// _CrtSetBreakAlloc(100);
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#endif
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try
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{
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main_function(argc, argv);
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}
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catch(exception& e)
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{
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cout << "Exception: " << e.what() << '\n';
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}
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return 1;
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}
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@ -1,15 +0,0 @@
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noinst_PROGRAMS = CellularBitEA
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LIBEO = $(top_builddir)/src/libeo.a
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LIBEOUTILS = $(top_builddir)/src/utils/libeoutils.a
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CXX = $(MPICXX)
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LD = $(MPICXX)
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AM_CXXFLAGS = -I$(top_srcdir)/src
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DEPS = $(LIBEOUTILS) $(LIBEO)
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LIBS = $(LIBEOUTILS) $(LIBEO)
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noinst_HEADERS = binary_value.h
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CellularBitEA_SOURCES = CellularBitEA.cpp
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@ -1,16 +0,0 @@
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.SUFFIXES: .cpp
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.cpp: ; c++ -DPACKAGE=\"eo\" -DVERSION=\"0.9.1\" -I. -I../../../src -Wall -g -o $@ $*.cpp ../../../src/utils/libeoutils.a ../../../src/libeo.a
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.cpp.o: ; c++ -DPACKAGE=\"eo\" -DVERSION=\"0.9.1\" -I. -I../../../src -Wall -g -c $*.cpp
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ALL = CellularBitEA
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lesson3 : $(firstEA)
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all : $(ALL)
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clean :
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@/bin/rm $(ALL) *.o *~
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CellularBitEA : binary_value.h
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@ -1,17 +0,0 @@
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#include <eo>
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//-----------------------------------------------------------------------------
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/** Just a simple function that takes binary value of a chromosome and sets
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the fitnes.
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@param _chrom A binary chromosome
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*/
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// INIT
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double binary_value(const std::vector<bool>& _chrom)
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{
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double sum = 0;
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for (unsigned i = 0; i < _chrom.size(); i++)
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sum += _chrom[i];
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return sum;
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}
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