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Update for release.

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kuepper 2006-12-18 18:51:12 +00:00
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eo/configure.in
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dnl Process this file with autoconf to produce a configure script.
dnl
dnl Change the version number here
AC_INIT([Evolving Objects], [1.0-beta2], [eodev-help@sourceforge.net], [eo])
AC_INIT([Evolving Objects], [1.0-cvs], [eodev-help@sourceforge.net], [eo])
AC_PREREQ(2.53)
dnl make sure we are compiling from the correct sources

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eo/doc/ChangeLog
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2006-12-18 Jochen Küpper <jochen@fhi-berlin.mpg.de>
* mainpage.html, publications.html: Update for release.
* index.h: Add old ToDos
* eo.cfg (PROJECT_NUMBER): Bump version to 1.0

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eo/doc/mainpage.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd">
"http://www.w3.org/TR/1999/REC-html401-19991224/loose.dtd">
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="author" content="EO development team">
<meta name="keywords" content="Class libraries, evolutionary computation, evolution strategies, genetic algorithms, genetic programming, simulated annealing, C++">
<meta name="resource-type" content="document">
<meta name="distribution" content="Global">
<title>EO Evolutionary Computation Framework</title>
<style type="text/css">
H2 {
font-family: Helvetica,Arial;
color: #ffffcc;
background: #00309c;
}
</style>
</head>
<body alink="#ff0000" bgcolor="#ffffcc" link="#0000ee" text="#00309c" vlink="#551a8b">
<center>
<h1>EO Evolutionary Computation Framework</h1>
</center>
<table bgcolor="#ffffcc" border="0" cellpadding="5" width="100%">
<tbody>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>What is EO?</h2>
</td>
<td bgcolor="#ffcc99">
<p>
EO is a templates-based, ANSI-C++ compliant evolutionary
computation library. It contains classes for almost any kind of
evolutionary computation you might come up to - at least for the
ones we could think of. It is component-based, so that if you
don't find the class you need in it, it is very easy to subclass
existing abstract or concrete classes.
</p>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="author" content="EO development team">
<meta name="keywords" content="Class libraries, evolutionary computation, evolution strategies, genetic algorithms, genetic programming, simulated annealing, C++">
<meta name="resource-type" content="document">
<meta name="distribution" content="Global">
<title>EO Evolutionary Computation Framework</title>
<style type="text/css">
H2 {
font-family: Helvetica,Arial;
color: #ffffcc;
background: #00309c;
}
</style>
</head>
<body alink="#ff0000" bgcolor="#ffffcc" link="#0000ee" text="#00309c" vlink="#551a8b">
<center>
<h1>EO Evolutionary Computation Framework</h1>
</center>
<table bgcolor="#ffffcc" border="0" cellpadding="5" width="100%">
<tbody>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>What is EO?</h2>
</td>
<td bgcolor="#ffcc99">
<p>
EO was started by the
<a href="http://geneura.ugr.es/">Geneura Team</a> at the
University of Granada, headed
by <a href="http://geneura.ugr.es/%7Ejmerelo/">Juan Julián
Merelo</a>.
The <a href="http://geneura.ugr.es/%7Ejmerelo/EO.html">original
Web site</a> is also the only place where you will find old
releases of EO (up to 0.8.7), but beware that it is not compatible
at all with the current version.
</p>
<p> EO is a templates-based, ANSI-C++ compliant evolutionary computation
library. It contains classes for almost any kind of evolutionary
computation you might come up to - at least for the ones we could think
of. It is component-based, so that if you don't find the class you need
in it, it is very easy to subclass existing abstract or concrete
classes. </p>
<p>
The developement team has then been reinforced by
<a href="http://www.cs.vu.nl/~mkeijzer">Maarten Keijzer</a>, the
C++ wizzard, and <a href="http://www.lri.fr/%7Emarc">Marc
Schoenauer</a>. Later
came <a href="http://www.liacs.nl/%7Ejeggermo/">Jeroen
Eggermont</a>, who, among other things, did a lot of work on GP,
<a href="http://www.lifl.fr/%7Ecahon/">S&eacute;bastien Cahon</a>, who
developped the parallel version of EO, ParadisEO,
<a href="mailto:okoenig@users.sourceforge.net">Olivier König</a>,
who did a lot of useful additions and cleaning of the code
and <a href="http://www.jochen-kuepper.de">Jochen Küpper</a>,
working on infrastructure maintenance.
</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Platforms</h2>
</td>
<td bgcolor="#ffcc99">
<p>
EO should work on Windows and any Un*x-like operating system with
a standard-conforming C++ development system.
</p>
<p> EO was started by the <a href="http://geneura.ugr.es/">Geneura
Team</a> at the University of Granada, headed by <a
href="http://geneura.ugr.es/%7Ejmerelo/">Juan Julián Merelo</a>. The <a
href="http://geneura.ugr.es/~jmerelo/EO.orig.html"
target="_blank">original Web site</a> is also the only place where you
will find old releases of EO (up to 0.8.7), but beware that it is not
compatible at all with the current version. </p>
<p>
Recent versions of EO have been tested on the following platforms:
</p>
<ul>
<li>Linux x86 with GCC 3.x and 4.x</li>
<li>Linux x86_64 with GCC 3.x and GCC 4.x</li>
<li>MacOS X/Darwin PowerPC with GCC 3.x</li>
<li>MacOS X/Darwin x86 with GCC 4.x</li>
<li>Microsoft Windows using Cygwin's GCC 3.x (cygming special).
<li>Microsoft Windows using Visual Studio 2003/2005; projects files
are provided.</li>
<li>Solaris SPARC with GCC 3.x</li>
<li>Solaris x86 with GCC 3.x</li>
</ul>
<p>
If you have tested EO on a system not listed here, please
<a href="mailto:eodev-main@lists.sourceforge.net?subject=test-report">let
us know</a>.
</p>
<p> The developement team has then been reinforced by <a
href="http://www.cs.vu.nl/~mkeijzer">Maarten Keijzer</a>, the C++
wizzard, and <a href="http://www.lri.fr/%7Emarc">Marc Schoenauer</a>.
Later came <a href="http://www.liacs.nl/%7Ejeggermo/">Jeroen
Eggermont</a>, who, among other things, did a lot of work on GP, <a
href="http://www.lifl.fr/%7Ecahon/">S&eacute;bastien Cahon</a>, who
developped the parallel version of EO, ParadisEO, <a
href="mailto:okoenig@users.sourceforge.net">Olivier König</a>, who did a
lot of useful additions and cleaning of the code and <a
href="http://www.jochen-kuepper.de">Jochen Küpper</a>, working on
infrastructure maintenance. </p>
<p>
If you are working on a system with an older C++ compiler there is
a good chance that eo-0.9.3z.1 works. It is tested on Linux with
gcc-2.9x and several systems (IRIX, Solaris) with egcs.
</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Documentation</h2>
</td>
<td bgcolor="#ffcc99">
<p>
The tutorial demonstrates that writing an evolutionary algorithm
evolving your own structures is now <em>easy</em>, using
ready-to-use template files. Although the tutorial has not been
upgraded for some time now and refers to version 0.9.2 of EO, it
nevertheless remains the best way to dive into EO. You can start
by trying it on-line at <a
href="http://www.lri.fr/%7Emarc/EO/eo/tutorial/html/eoTutorial.html">LRI</a>
or <a
href="http://eodev.sourceforge.net/eo/tutorial/html/eoTutorial.html">SourceForge</a>,
before <a href="http://www.lri.fr/%7Emarc/EO/">downloading it</a>.
The tutorial is also included in the <a
href="http://sourceforge.net/project/showfiles.php?group_id=9775">released
sources</a>.
</p>
<p>
The latest
<a
href="http://eodev.sourceforge.net/eo/tutorial/html/eoTutorial.html">tutorial
release</a> includes
a <a
href="http://eodev.sourceforge.net/eo/tutorial/pdf/paradiseoJet7.pdf">introduction
to ParadisEO</a>, the parallel version of EO.
</p>
<p>
The complete code is also well documented and you can look at the
generated <a
href="http://eodev.sourceforge.net/eo/doc/html/index.html">interface
documentation</a>.
</p>
<p>
The easiest way to create a complete new EO-project, even for new
genomes, is to use the script provided in tutorial/Templates/; see
the README in that directory and lesson 5 of the tutorial for
detail.
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Presentations</h2>
</td>
<td bgcolor="#ffcc99">
<p>
A functional and "philosophical" overview of EO was presented at
<a href="http://www.cmap.polytechnique.fr/%7Eea01/">EA'01
conference</a>. You can download <a
href="http://eodev.sourceforge.net/eo/doc/EO_EA2001.pdf">the
paper</a> or
<a href="http://eodev.sourceforge.net/eo/doc/LeCreusot.pdf">the
slides</a>.
</p>
<p>
An older (but <i>large</i>) PowerPoint presentation shows the EO
philosophy, and it includes a Visual Basic macro for evolving
objects in Visual Basic for Applications. You can download
it <a href="ftp://geneura.ugr.es/pub/jmerelo/eo_ppt.zip">from
here</a>.
</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Platforms</h2>
</td>
<td bgcolor="#ffcc99">
<p>
You can also look a the <a href="publications.html">list of
publications</a> that used EO to solve real problems.
</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Download</h2>
</td>
<td bgcolor="#ffcc99">
<p>
The current (beta) release is <a
href="http://sourceforge.net/project/showfiles.php?group_id=9775">EO-1.0</a>.
It supports any Standard-compliant C++ compiler.
</p>
<p>
You can obtain the latest version directly
via <a href="http://sourceforge.net/cvs/?group_id=9775">cvs</a> or
download a daily snapshot from
<a href="http://www.lri.fr/%7Emarc/EO/snapshot">LRI</a>.
</p>
<p>
All releases can be obtained from the SourceForge <a
href="http://sourceforge.net/project/showfiles.php?group_id=9775">download
area</a>.
</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Mailing Lists</h2>
</td>
<td bgcolor="#ffcc99">We would like EO to be an open development
effort; that is why we have created mailing lists to discuss
future developments, solve technical problems, announce releases,
publish patches, and discuss evolutionary computation in general.
Browse the archives or join the
<a href="http://sourceforge.net/mail/?group_id=9775">EO mailing
lists</a>.</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>EO@sourceforge</h2>
</td>
<td bgcolor="#ffcc99">
<p>The following resources are available, thanks to sourceforge</p>
<ul>
<li> <a href="http://sourceforge.net/project/?group_id=9775">EO
SourceForge Project Page</a></li>
<li><a href="http://eodev.sourceforge.net/eo/doc/html/index.html">EO
automatic documentation page at SF</a><br>
</li>
<li><a href="http://eodev.sourceforge.net/eo/tutorial/html/eoTutorial.html">EO
tutorial page at SF</a><br>
</li>
<li> <a href="https://sourceforge.net/project/showfiles.php?group_id=9775">Releases</a></li>
<li> <a href="http://sourceforge.net/mail/?group_id=9775">Mailing Lists</a></li>
<li> <a href="http://sourceforge.net/forum/?group_id=9775">Message Forums</a></li>
<li> <a href="http://sourceforge.net/bugs/?group_id=9775">Bug Submission and Tracking</a></li>
<li> <a href="http://sourceforge.net/support/?group_id=9775">Technical Support</a></li>
<li> <a href="http://sourceforge.net/patch/?group_id=9775">Patch Submission</a></li>
<li> <a href="http://sourceforge.net/cvs/?group_id=9775">CVS repository</a></li>
</ul>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>License</h2>
</td>
<td bgcolor="#ffcc99">EO is distributed under the
<a href="http://www.gnu.org/copyleft/lesser.html">GNU Lesser General
Public License</a></td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Related Apps</h2>
</td>
<td bgcolor="#ffcc99">
<p>
<a
href="http://www.lifl.fr/%7Ecahon/paradisEO/index.html">ParadisEO</a>
provides extensions for EO on parallel architectures.
</p>
<p> EO should work on Windows and any Un*x-like operating system with a
standard-conforming C++ development system. </p>
<p>
<a href="ftp://geneura.ugr.es/pub/eo/DegaX">DegaX</a> is an
ActiveX control developed by three degree students which
embeds <a href="ftp://geneura.ugr.es/pub/eo/eo-0.8.4.zip">EO
0.8.4</a>. (Currently these links are dead. Please
<a href="mailto:eodev-main@lists.sourceforge.net?subject=DegaX">let
us know</a> where they should point.)
</p>
<p> Recent versions of EO have been tested on the following platforms:
</p>
<ul>
<li>Linux x86 with GCC 3.x and 4.x</li>
<li>Linux x86_64 with GCC 3.x and GCC 4.x</li>
<li>MacOS X/Darwin PowerPC with GCC 3.x</li>
<li>MacOS X/Darwin x86 with GCC 4.x</li>
<li>Microsoft Windows using Cygwin's GCC 3.x (cygming special).
<li>Microsoft Windows using Visual Studio 2003/2005; projects files
are provided.</li>
<li>Solaris SPARC with GCC 3.x</li>
<li>Solaris x86 with GCC 3.x</li>
</ul>
<p>
<a href="http://www.lifl.fr/~cahon/paradisEO/moeo/">MOEO</a>, a
multi-objective package on top of EO.
</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Links</h2>
</td>
<td bgcolor="#ffcc99">
<ul>
<li><a href="http://www.aip.de/~ast/EvolCompFAQ">The
Hitch-Hiker's Guide to Evolutionary Computation</a>, FAQ for
<a href="news:comp.ai.genetic">comp.ai.genetic</a>.</li>
<li><a href="http://en.wikipedia.org/wiki/Evolutionary_algorithm">Wikipedia</a>
on Evolutionary algorithms.</li>
<li>Charles Darwin: <a href="http://en.wikipedia.org/wiki/The_Origin_of_Species">The
Origin of Species</a>.</li>
<li>Nikolaus Hansen: <a
href="http://www.bionik.tu-berlin.de/user/niko/cec2005.html">Comparison
of Evolutionary Algorithms on a Benchmark Function Set</a>.</li>
</ul>
</td>
</tr>
</tbody>
</table>
<center>
<p>
Hosted by:<br/><a href="http://sourceforge.net/"><img alt="SF logo"
src="http://eodev.sourceforge.net/eo/doc/sflogo-hammer1.jpg"></a>
</p>
</center>
<p>
<a href="http://validator.w3.org/check?uri=referer">
<img src="http://www.w3.org/Icons/valid-html401"
alt="Valid HTML 4.01 Transitional"
height="31"
width="88"></a>
<br/>
Please send comments on this webpage to
the <a href="mailto:eodev-main@lists.sourceforge.net?subject=webpage">EO
mailing list</a>.
</p>
</body>
<p> If you have tested EO on a system not listed here, please <a
href="mailto:eodev-main@lists.sourceforge.net?subject=test-report">let
us know</a>. </p>
<p> If you are working on a system with an older C++ compiler there
is a good chance that eo-0.9.3z.1 works. It is tested on Linux
with gcc-2.9x and several systems (IRIX, Solaris) with egcs. </p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Documentation</h2>
</td>
<td bgcolor="#ffcc99">
<p>The tutorial demonstrates that writing an evolutionary algorithm
evolving your own structures is now <em>easy</em>, using ready-to-use
template files. Although the tutorial has not been upgraded for some
time now and refers to version 0.9.2 of EO, it nevertheless remains the
best way to dive into EO. You can start by trying it on-line at <a
href="http://www.lri.fr/%7Emarc/EO/eo/tutorial/html/eoTutorial.html">LRI</a>
or <a
href="http://eodev.sourceforge.net/eo/tutorial/html/eoTutorial.html">SourceForge</a>,
before <a href="http://www.lri.fr/%7Emarc/EO/">downloading it</a>. The
tutorial is also included in the <a
href="http://sourceforge.net/project/showfiles.php?group_id=9775">released
sources</a>. </p>
<p>The latest <a
href="http://eodev.sourceforge.net/eo/tutorial/html/eoTutorial.html">tutorial
release</a> includes a <a
href="http://eodev.sourceforge.net/eo/tutorial/pdf/paradiseoJet7.pdf">introduction
to ParadisEO</a>, the parallel version of EO. </p>
<p>The complete code is also well documented and you can look at the
generated <a
href="http://eodev.sourceforge.net/eo/doc/html/index.html">interface
documentation</a>. </p>
<p>The easiest way to create a complete new EO-project, even for new
genomes, is to use the script provided in tutorial/Templates/; see
the README in that directory and lesson 5 of the tutorial for
detail.</p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Presentations</h2>
</td>
<td bgcolor="#ffcc99">
<p> A functional and "philosophical" overview of EO was presented at <a
href="http://www.cmap.polytechnique.fr/%7Eea01/">EA'01 conference</a>.
You can download <a
href="http://eodev.sourceforge.net/eo/doc/EO_EA2001.pdf">the paper</a>
or <a href="http://eodev.sourceforge.net/eo/doc/LeCreusot.pdf">the
slides</a>. </p>
<p> A <a href="http://geneura.ugr.es/~jmerelo/GAPPT/index.html"
target="_blank">PowerPoint presentation</a> shows the EO philosophy, and
it includes a Visual Basic macro for evolving objects in Visual Basic
for Applications. </p>
<p>You can also look a the <a href="publications.html">list of
publications</a> that used EO to solve real problems. </p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Download</h2>
</td>
<td bgcolor="#ffcc99">
<p> The current release is <a
href="http://sourceforge.net/project/showfiles.php?group_id=9775">EO 1.0</a>.
It supports any Standard-compliant C++ compiler. </p>
<p> You can obtain the latest version directly via <a
href="http://sourceforge.net/cvs/?group_id=9775">cvs</a> or download a
daily snapshot from <a
href="http://www.lri.fr/%7Emarc/EO/snapshot">LRI</a>. </p>
<p> All releases can be obtained from the SourceForge <a
href="http://sourceforge.net/project/showfiles.php?group_id=9775">download
area</a>. </p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Mailing Lists</h2>
</td>
<td bgcolor="#ffcc99">
We would like EO to be an open development effort; that is why we have
created mailing lists to discuss future developments, solve technical
problems, announce releases, publish patches, and discuss evolutionary
computation in general. Browse the archives or join the <a
href="http://sourceforge.net/mail/?group_id=9775">EO mailing lists</a>.
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>EO@sourceforge</h2>
</td>
<td bgcolor="#ffcc99">
<p>The following resources are available, thanks to sourceforge</p>
<ul>
<li> <a href="http://sourceforge.net/project/?group_id=9775">EO
SourceForge Project Page</a></li>
<li><a href="http://eodev.sourceforge.net/eo/doc/html/index.html">EO
automatic documentation page at SF</a><br>
</li>
<li><a href="http://eodev.sourceforge.net/eo/tutorial/html/eoTutorial.html">EO
tutorial page at SF</a><br>
</li>
<li> <a href="https://sourceforge.net/project/showfiles.php?group_id=9775">Releases</a></li>
<li> <a href="http://sourceforge.net/mail/?group_id=9775">Mailing Lists</a></li>
<li> <a href="http://sourceforge.net/forum/?group_id=9775">Message Forums</a></li>
<li> <a href="http://sourceforge.net/bugs/?group_id=9775">Bug Submission and Tracking</a></li>
<li> <a href="http://sourceforge.net/support/?group_id=9775">Technical Support</a></li>
<li> <a href="http://sourceforge.net/patch/?group_id=9775">Patch Submission</a></li>
<li> <a href="http://sourceforge.net/cvs/?group_id=9775">CVS repository</a></li>
</ul>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>License</h2>
</td>
<td bgcolor="#ffcc99">EO is distributed under the
<a href="http://www.gnu.org/copyleft/lesser.html">GNU Lesser General
Public License</a>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Related Apps</h2>
</td>
<td bgcolor="#ffcc99">
<p> <a href="http://paradiseo.gforge.inria.fr"
target="_blank">ParadisEO</a> provides extensions for EO on parallel
architectures. </p>
<p> <a href="http://geneura.ugr.es/~jmerelo/DegaX/"
target="_blank">DegaX</a> is an ActiveX control which embeds EO 0.8.4.
</p>
<p> <a href="http://www.lifl.fr/~cahon/paradisEO/moeo"
target="_blank">MOEO</a>, a multi-objective package on top of EO. </p>
</td>
</tr>
<tr>
<td class="TITLE" align="right" valign="top" width="100">
<h2>Links</h2>
</td>
<td bgcolor="#ffcc99">
<ul>
<li><a href="http://www.aip.de/~ast/EvolCompFAQ" target="_blank">The
Hitch-Hiker's Guide to Evolutionary Computation</a>, FAQ for
<a href="news:comp.ai.genetic">comp.ai.genetic</a>.</li>
<li><a href="http://en.wikipedia.org/wiki/Evolutionary_algorithm" target="_blank">Wikipedia</a>
on Evolutionary algorithms.</li>
<li>Charles Darwin: <a href="http://en.wikipedia.org/wiki/The_Origin_of_Species" target="_blank">The
Origin of Species</a>.</li>
<li>Nikolaus Hansen: <a
href="http://www.bionik.tu-berlin.de/user/niko/cec2005.html" target="_blank">Comparison
of Evolutionary Algorithms on a Benchmark Function Set</a>.</li>
</ul>
</td>
</tr>
</tbody>
</table>
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