Merge branch 'master' of ssh://eodev.git.sourceforge.net/gitroot/eodev/eodev

This commit is contained in:
nojhan 2011-05-11 22:08:57 +02:00
commit 4703121227
13 changed files with 199 additions and 294 deletions

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@ -1,6 +1,6 @@
#!/usr/bin/env sh
mkdir release
mkdir -p release
cd release
cmake -DENABLE_EO_TUTORIAL=1 ..
make

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@ -3,7 +3,7 @@
//-----------------------------------------------------------------------------
// eoApply.h
// (c) Maarten Keijzer 2000
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -19,7 +19,7 @@
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
mak@dhi.dk
mak@dhi.dk
*/
//-----------------------------------------------------------------------------
@ -94,7 +94,7 @@ void omp_apply(eoUF<EOT&, void>& _proc, std::vector<EOT>& _pop)
//default(none) shared(_proc, _pop, size)
for (size_t i = 0; i < size; ++i)
{
_proc(_pop[i]);
_proc(_pop[i]);
}
}
@ -112,7 +112,7 @@ void omp_dynamic_apply(eoUF<EOT&, void>& _proc, std::vector<EOT>& _pop)
//default(none) shared(_proc, _pop, size)
for (size_t i = 0; i < size; ++i)
{
_proc(_pop[i]);
_proc(_pop[i]);
}
}

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@ -1,7 +1,7 @@
//-----------------------------------------------------------------------------
// eo
// (c) GeNeura Team 1998 - 2000
/*
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
@ -23,7 +23,7 @@
#ifdef _MSC_VER
// to avoid long name warnings
#pragma warning(disable:4786)
#endif
#endif
#ifndef _eo_
#define _eo_
@ -62,7 +62,7 @@
// combinations of simple eoOps (eoMonOp and eoQuadOp)
#include <eoProportionalCombinedOp.h>
// didactic (mimics SGA-like variation into an eoGenOp)
// calls crossover and mutation sequentially,
// calls crossover and mutation sequentially,
// with their respective mutation rates
#include <eoSGAGenOp.h>
// its dual: crossover, mutation (and copy) - proportional choice
@ -100,7 +100,7 @@
#include <eoRankingSelect.h>
#include <eoStochTournamentSelect.h>
#include <eoSharingSelect.h>
// Embedding truncation selection
// Embedding truncation selection
#include <eoTruncatedSelectOne.h>
// the batch selection - from an eoSelectOne
@ -165,45 +165,44 @@
// velocities
#include <eoVelocity.h>
#include <eoStandardVelocity.h>
#include <eoExtendedVelocity.h>
#include <eoIntegerVelocity.h>
#include <eoExtendedVelocity.h>
#include <eoIntegerVelocity.h>
#include <eoConstrictedVelocity.h>
#include <eoFixedInertiaWeightedVelocity.h>
#include <eoVariableInertiaWeightedVelocity.h>
#include <eoConstrictedVariableWeightVelocity.h>
#include <eoConstrictedVariableWeightVelocity.h>
// flights
#include <eoFlight.h>
#include <eoStandardFlight.h>
#include <eoStandardFlight.h>
#include <eoVelocityInit.h>
#include <eoBinaryFlight.h>
#include <eoSigBinaryFlight.h>
#include <eoBinaryFlight.h>
#include <eoSigBinaryFlight.h>
// topologies
#include <eoTopology.h>
#include <eoStarTopology.h>
#include <eoLinearTopology.h>
#include <eoRingTopology.h>
#include <eoNeighborhood.h>
#include <eoSocialNeighborhood.h>
// PS algorithms
#include <eoPSO.h>
#include <eoEasyPSO.h>
#include <eoSyncEasyPSO.h>
#include <eoNeighborhood.h>
#include <eoSocialNeighborhood.h>
// PS algorithms
#include <eoPSO.h>
#include <eoEasyPSO.h>
#include <eoSyncEasyPSO.h>
// utils
#include <eoRealBoundModifier.h>
#include <eoRandomRealWeightUp.h>
#include <eoWeightUpdater.h>
#include <eoLinearDecreasingWeightUp.h>
#include <eoGaussRealWeightUp.h>
#include <utils/eoParserLogger.h>
#include <eoGaussRealWeightUp.h>
#include <utils/eoLogger.h>
#include <utils/eoParallel.h>
#endif
#endif
// Local Variables:
// mode: C++

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@ -14,26 +14,29 @@ SET(CMA_LIB_OUTPUT_PATH ${EO_BINARY_DIR}/lib)
SET(LIBRARY_OUTPUT_PATH ${ES_LIB_OUTPUT_PATH}) # the same output for the two libs
SET (ES_SOURCES make_algo_scalar_es.cpp
make_algo_scalar_real.cpp
make_checkpoint_es.cpp
make_checkpoint_real.cpp
make_continue_es.cpp
make_continue_real.cpp
make_genotype_es.cpp
make_genotype_real.cpp
make_op_es.cpp
make_op_real.cpp
make_pop_es.cpp
make_pop_real.cpp
make_run_es.cpp
make_run_real.cpp)
SET (CMA_SOURCES eig.cpp
CMAState.cpp
CMAParams.cpp)
SET(ES_SOURCES
make_algo_scalar_es.cpp
make_algo_scalar_real.cpp
make_checkpoint_es.cpp
make_checkpoint_real.cpp
make_continue_es.cpp
make_continue_real.cpp
make_genotype_es.cpp
make_genotype_real.cpp
make_op_es.cpp
make_op_real.cpp
make_pop_es.cpp
make_pop_real.cpp
make_run_es.cpp
make_run_real.cpp
)
SET(CMA_SOURCES
eig.cpp
CMAState.cpp
CMAParams.cpp
)
ADD_LIBRARY(es STATIC ${ES_SOURCES})
INSTALL(TARGETS es ARCHIVE DESTINATION lib COMPONENT libraries)
@ -54,4 +57,3 @@ SET(CMA_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(cma PROPERTIES VERSION "${CMA_VERSION}")
######################################################################################

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@ -12,14 +12,15 @@ INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR})
SET(GA_LIB_OUTPUT_PATH ${EO_BINARY_DIR}/lib)
SET(LIBRARY_OUTPUT_PATH ${GA_LIB_OUTPUT_PATH})
SET (GA_SOURCES make_algo_scalar_ga.cpp
make_checkpoint_ga.cpp
make_continue_ga.cpp
make_genotype_ga.cpp
make_op_ga.cpp
make_pop_ga.cpp
make_run_ga.cpp)
SET(GA_SOURCES
make_algo_scalar_ga.cpp
make_checkpoint_ga.cpp
make_continue_ga.cpp
make_genotype_ga.cpp
make_op_ga.cpp
make_pop_ga.cpp
make_run_ga.cpp
)
ADD_LIBRARY(ga STATIC ${GA_SOURCES})
INSTALL(TARGETS ga ARCHIVE DESTINATION lib COMPONENT libraries)
@ -35,4 +36,3 @@ SET(GA_VERSION ${GLOBAL_VERSION})
SET_TARGET_PROPERTIES(ga PROPERTIES VERSION "${GA_VERSION}")
######################################################################################

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@ -1,3 +1,2 @@
FILE(GLOB HDRS *.h)
INSTALL(FILES ${HDRS} DESTINATION include/eo/gp COMPONENT headers)

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@ -12,24 +12,24 @@ INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR})
SET(EOUTILS_LIB_OUTPUT_PATH ${EO_BINARY_DIR}/lib)
SET(LIBRARY_OUTPUT_PATH ${EOUTILS_LIB_OUTPUT_PATH})
SET (EOUTILS_SOURCES eoData.cpp
eoFileMonitor.cpp
eoGnuplot.cpp
eoGnuplot1DMonitor.cpp
eoGnuplot1DSnapshot.cpp
eoIntBounds.cpp
eoParser.cpp
eoRealBounds.cpp
eoRNG.cpp
eoState.cpp
eoOStreamMonitor.cpp
eoUpdater.cpp
make_help.cpp
pipecom.cpp
eoLogger.cpp
eoParserLogger.cpp
eoParallel.cpp)
SET(EOUTILS_SOURCES
eoData.cpp
eoFileMonitor.cpp
eoGnuplot.cpp
eoGnuplot1DMonitor.cpp
eoGnuplot1DSnapshot.cpp
eoIntBounds.cpp
eoParser.cpp
eoRealBounds.cpp
eoRNG.cpp
eoState.cpp
eoOStreamMonitor.cpp
eoUpdater.cpp
make_help.cpp
pipecom.cpp
eoLogger.cpp
eoParallel.cpp
)
ADD_LIBRARY(eoutils STATIC ${EOUTILS_SOURCES})
INSTALL(TARGETS eoutils ARCHIVE DESTINATION lib COMPONENT libraries)

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@ -26,30 +26,31 @@ Authors:
*/
#ifdef _INTERIX
#ifdef _WIN32
#include <io.h>
#else // _INTERIX
#else // _WIN32
#include <unistd.h>
#endif // ! _INTERIX
#endif // ! _WIN32
#include <fcntl.h>
#include <cstdlib>
#include <cstdio> // used to define EOF
#include <iostream>
#include <sstream>
#include <exception>
#include <stdexcept>
#include <locale>
#include "eoLogger.h"
eoLogger eo::log;
eoLogger::eoLogger() :
std::ostream(&_obuf),
eoLogger::eoLogger()
: std::ostream(&_obuf),
_selectedLevel(eo::progress), _contextLevel(eo::quiet),
_fd(2), _obuf(_fd, _contextLevel, _selectedLevel)
_verbose("quiet", "verbose", "Set the verbose level", 'v'),
_printVerboseLevels(false, "print-verbose-levels", "Print verbose levels", 'l'),
_output("", "output", "Redirect a standard output to a file", 'o'),
_selectedLevel(eo::progress),
_contextLevel(eo::quiet),
_fd(2),
_obuf(_fd, _contextLevel, _selectedLevel)
{
_standard_io_streams[&std::cout] = 1;
_standard_io_streams[&std::clog] = 2;
@ -71,18 +72,56 @@ eoLogger::~eoLogger()
if (_fd > 2) { ::close(_fd); }
}
std::string eoLogger::className() const
void eoLogger::_createParameters( eoParser& parser )
{
//------------------------------------------------------------------
// we are saying to eoParser to create the parameters created above.
//------------------------------------------------------------------
std::string section("Logger");
parser.processParam(_verbose, section);
parser.processParam(_printVerboseLevels, section);
parser.processParam(_output, section);
//------------------------------------------------------------------
//------------------------------------------------------------------
// we're gonna redirect the log to the given filename if -o is used.
//------------------------------------------------------------------
if ( ! _output.value().empty() )
{
eo::log << eo::file( _output.value() );
}
//------------------------------------------------------------------
//------------------------------------------------------------------
// // we're gonna print the list of levels if -l parameter is used.
//------------------------------------------------------------------
if ( _printVerboseLevels.value() )
{
eo::log.printLevels();
}
//------------------------------------------------------------------
}
std::string eoLogger::className() const
{
return ("eoLogger");
}
void eoLogger::addLevel(std::string name, eo::Levels level)
void eoLogger::addLevel(std::string name, eo::Levels level)
{
_levels[name] = level;
_sortedLevels.push_back(name);
}
void eoLogger::printLevels() const
void eoLogger::printLevels() const
{
std::cout << "Available verbose levels:" << std::endl;
@ -95,25 +134,25 @@ void eoLogger::printLevels() const
::exit(0);
}
eoLogger& operator<<(eoLogger& l, const eo::Levels lvl)
eoLogger& operator<<(eoLogger& l, const eo::Levels lvl)
{
l._contextLevel = lvl;
return l;
}
eoLogger& operator<<(eoLogger& l, eo::file f)
eoLogger& operator<<(eoLogger& l, eo::file f)
{
l._fd = ::open(f._f.c_str(), O_WRONLY | O_APPEND | O_CREAT, 0644);
return l;
}
eoLogger& operator<<(eoLogger& l, eo::setlevel v)
eoLogger& operator<<(eoLogger& l, eo::setlevel v)
{
l._selectedLevel = (v._lvl < 0 ? l._levels[v._v] : v._lvl);
return l;
}
eoLogger& operator<<(eoLogger& l, std::ostream& os)
eoLogger& operator<<(eoLogger& l, std::ostream& os)
{
if (l._standard_io_streams.find(&os) != l._standard_io_streams.end())
{
@ -128,20 +167,20 @@ eoLogger::outbuf::outbuf(const int& fd,
: _fd(fd), _contextLevel(contexlvl), _selectedLevel(selectedlvl)
{}
int eoLogger::outbuf::overflow(int_type c)
int eoLogger::outbuf::overflow(int_type c)
{
if (_selectedLevel >= _contextLevel)
{
if (_fd >= 0 && c != EOF)
{
ssize_t num;
size_t num;
num = ::write(_fd, &c, 1);
}
}
return c;
}
namespace eo
namespace eo
{
file::file(const std::string f)
: _f(f)
@ -155,3 +194,13 @@ namespace eo
: _v(std::string("")), _lvl(lvl)
{}
}
//! make_verbose gets level of verbose and sets it in eoLogger
void make_verbose(eoParser& parser)
{
eo::log._createParameters( parser );
eo::log << eo::setlevel(eo::log._verbose.value());
}
eoLogger eo::log;

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@ -32,15 +32,12 @@ Caner Candan <caner.candan@thalesgroup.com>
Here's an example explaning how to use eoLogger:
\code
#include <iostream>
#include <utils/eoLogger.h>
#include <utils/eoParserLogger.h>
#include <eo>
int main(int ac, char** av)
{
// We are declaring first an overload of eoParser class using Logger
// component.
eoParserLogger parser(ac, av);
// We are declaring the usual eoParser class
eoParser parser(ac, av);
// This call is important to allow -v parameter to change user level.
make_verbose(parser);
@ -88,17 +85,17 @@ Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef eoLogger_h
# define eoLogger_h
#define eoLogger_h
# include <map>
# include <vector>
# include <string>
# include <iosfwd>
#include <map>
#include <vector>
#include <string>
#include <iosfwd>
# include "eoObject.h"
#include "eoObject.h"
#include "eoParser.h"
namespace eo
namespace eo
{
/**
* Levels contents all the available levels in eoLogger
@ -117,7 +114,7 @@ namespace eo
* file
* this structure combined with the friend operator<< below is an easy way to select a file as output.
*/
struct file
struct file
{
file(const std::string f);
const std::string _f;
@ -127,7 +124,7 @@ namespace eo
* setlevel
* this structure combined with the friend operator<< below is an easy way to set a verbose level.
*/
struct setlevel
struct setlevel
{
setlevel(const std::string v);
setlevel(const Levels lvl);
@ -141,14 +138,14 @@ namespace eo
* Class providing a verbose management through EO
* Use of a global variable eo::log to easily use the logger like std::cout
*/
class eoLogger : public eoObject,
public std::ostream
class eoLogger : public eoObject,
public std::ostream
{
public:
eoLogger();
~eoLogger();
virtual std::string className() const;
virtual std::string className() const;
//! Print the available levels on the standard output
void printLevels() const;
@ -158,107 +155,115 @@ public:
* Use this function if you want to be able to compare selected levels to a given one, like:
* if( eo::log.getLevelSelected() >= eo::progress ) {...}
*/
eo::Levels getLevelSelected() const { return _selectedLevel; }
inline eo::Levels getLevelSelected() const { return _selectedLevel; }
/*! Returns the current level of the context
* the one given when you output message with the logger
*/
eo::Levels getLevelContext() const { return _contextLevel; }
inline eo::Levels getLevelContext() const { return _contextLevel; }
protected:
void addLevel(std::string name, eo::Levels level);
void addLevel(std::string name, eo::Levels level);
private:
void _createParameters( eoParser& );
private:
/**
* outbuf
* this class inherits from std::streambuf which is used by eoLogger to write the buffer in an output stream
*/
class outbuf : public std::streambuf
class outbuf : public std::streambuf
{
public:
outbuf(const int& fd,
const eo::Levels& contexlvl,
const eo::Levels& selectedlvl);
outbuf(const int& fd, const eo::Levels& contexlvl, const eo::Levels& selectedlvl);
protected:
virtual int overflow(int_type c);
virtual int overflow(int_type c);
private:
const int& _fd;
const eo::Levels& _contextLevel;
const eo::Levels& _selectedLevel;
const int& _fd;
const eo::Levels& _contextLevel;
const eo::Levels& _selectedLevel;
};
private:
/**
* MapLevel is the type used by the map member _levels.
*/
typedef std::map<std::string, eo::Levels> MapLevel;
typedef std::map<std::string, eo::Levels> MapLevel;
public:
/**
* operator<< used there to set a verbose mode.
*/
friend eoLogger& operator<<(eoLogger&, const eo::Levels);
friend eoLogger& operator<<(eoLogger&, const eo::Levels);
/**
* operator<< used there to set a filename through the class file.
*/
friend eoLogger& operator<<(eoLogger&, eo::file);
friend eoLogger& operator<<(eoLogger&, eo::file);
/**
* operator<< used there to set a verbose level through the class setlevel.
*/
friend eoLogger& operator<<(eoLogger&, eo::setlevel);
friend eoLogger& operator<<(eoLogger&, eo::setlevel);
/**
* operator<< used there to be able to use std::cout to say that we wish to redirect back the buffer to a standard output.
*/
friend eoLogger& operator<<(eoLogger&, std::ostream&);
friend eoLogger& operator<<(eoLogger&, std::ostream&);
private:
friend void make_verbose(eoParser&);
eoValueParam<std::string> _verbose;
eoValueParam<bool> _printVerboseLevels;
eoValueParam<std::string> _output;
/**
* _selectedLevel is the member storing verbose level setted by the user thanks to operator()
*/
eo::Levels _selectedLevel;
eo::Levels _contextLevel;
eo::Levels _selectedLevel;
eo::Levels _contextLevel;
/**
* _fd in storing the file descriptor at this place we can disable easily the buffer in
* changing the value at -1. It is used by operator <<.
*/
int _fd;
int _fd;
/**
* _obuf std::ostream mandates to use a buffer. _obuf is a outbuf inheriting of std::streambuf.
*/
outbuf _obuf;
outbuf _obuf;
/**
* _levels contains all the existing level order by position
*/
MapLevel _levels;
MapLevel _levels;
/**
* _levelsOrder is just a list to keep the order of levels
*/
std::vector<std::string> _sortedLevels;
std::vector<std::string> _sortedLevels;
/**
* _standard_io_streams
*/
std::map< std::ostream*, int > _standard_io_streams;
std::map< std::ostream*, int > _standard_io_streams;
};
/** @example t-eoLogger.cpp
*/
namespace eo
void make_verbose(eoParser&);
namespace eo
{
/**
* log is an external global variable defined to easily use a same way than std::cout to write a log.
*/
extern eoLogger log;
extern eoLogger log;
}
/** @} */
#endif // !eoLogger_h

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@ -1,80 +0,0 @@
/*
(c) Thales group, 2010
This library is free software; you can redistribute it and/or modify it under
the terms of the GNU Lesser General Public License as published by the Free
Software Foundation; version 2 of the license.
This library is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along
with this library; if not, write to the Free Software Foundation, Inc., 59
Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: http://eodev.sourceforge.net
Authors:
Johann Dreo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#include "eoParserLogger.h"
eoParserLogger::eoParserLogger(unsigned _argc, char** _argv,
std::string _programDescription /*= ""*/
,
std::string _lFileParamName /*= "param-file"*/,
char _shortHand /*= 'p'*/)
: eoParser(_argc, _argv, _programDescription, _lFileParamName, _shortHand),
_verbose("quiet", "verbose", "Set the verbose level", 'v'),
_printVerboseLevels(false, "print-verbose-levels", "Print verbose levels", 'l'),
_output("", "output", "Redirect a standard output to a file", 'o')
{
//------------------------------------------------------------------
// we are saying to eoParser to create the parameters created above.
//------------------------------------------------------------------
processParam(_verbose);
processParam(_printVerboseLevels);
processParam(_output);
//------------------------------------------------------------------
//------------------------------------------------------------------
// we're gonna redirect the log to the given filename if -o is used.
//------------------------------------------------------------------
if ( ! _output.value().empty() )
{
eo::log << eo::file( _output.value() );
}
//------------------------------------------------------------------
//------------------------------------------------------------------
// // we're gonna print the list of levels if -l parameter is used.
//------------------------------------------------------------------
if ( _printVerboseLevels.value() )
{
eo::log.printLevels();
}
//------------------------------------------------------------------
}
eoParserLogger::~eoParserLogger()
{}
//! make_verbose gets level of verbose and sets it in eoLogger
void make_verbose(eoParserLogger& _parser)
{
eo::log << eo::setlevel(_parser._verbose.value());
}

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@ -1,62 +0,0 @@
/*
(c) Thales group, 2010
This library is free software; you can redistribute it and/or modify it under
the terms of the GNU Lesser General Public License as published by the Free
Software Foundation; version 2 of the license.
This library is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along
with this library; if not, write to the Free Software Foundation, Inc., 59
Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: http://eodev.sourceforge.net
Authors:
Johann Dréo <johann.dreo@thalesgroup.com>
Caner Candan <caner.candan@thalesgroup.com>
*/
#ifndef EO_PARSER_LOGGER_H
#define EO_PARSER_LOGGER_H
#include "eoParser.h"
#include "eoLogger.h"
/**
* A parser that use the advanced logging system (@see eoLogger)
*
* @ingroup Parameters
* @ingroup Logging
*/
class eoParserLogger : public eoParser
{
public:
eoParserLogger(unsigned _argc, char** _argv,
std::string _programDescription = "",
std::string _lFileParamName = "param-file",
char _shortHand = 'p');
~eoParserLogger();
private:
friend void make_verbose(eoParserLogger&);
eoValueParam<std::string> _verbose;
eoValueParam<bool> _printVerboseLevels;
eoValueParam<std::string> _output;
};
void make_verbose(eoParserLogger&);
#endif // !EO_PARSER_LOGGER_H
// Local Variables:
// coding: iso-8859-1
// mode: C++
// c-file-offsets: ((c . 0))
// c-file-style: "Stroustrup"
// fill-column: 80
// End:

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@ -2,17 +2,13 @@
// t-eoLogger.cpp
//-----------------------------------------------------------------------------
#include <iostream>
#include <utils/eoLogger.h>
#include <utils/eoParserLogger.h>
#include <eo>
//-----------------------------------------------------------------------------
int main(int ac, char** av)
int main(int ac, char** av)
{
eoParserLogger parser(ac, av);
eoParser parser(ac, av);
if (parser.userNeedsHelp())
{

View file

@ -32,9 +32,6 @@ Caner Candan <caner.candan@thalesgroup.com>
#include <sstream>
#include <climits>
#include <utils/eoLogger.h>
#include <utils/eoParserLogger.h>
#include <eo>
#include <es/make_real.h>
@ -114,7 +111,7 @@ void measure( size_t p,
int main(int ac, char** av)
{
eoParserLogger parser(ac, av);
eoParser parser(ac, av);
unsigned int popMin = parser.getORcreateParam((unsigned int)1, "popMin", "Population Min", 'p', "Evolution Engine").value();
unsigned int popStep = parser.getORcreateParam((unsigned int)1, "popStep", "Population Step", 0, "Evolution Engine").value();