Added Marc's ES files and .dsp files for others
This commit is contained in:
parent
0d8648c0e6
commit
449ed17ff8
71 changed files with 6359 additions and 4825 deletions
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@ -13,7 +13,28 @@ LDADDS = $(top_builddir)/src/libeo.a
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###############################################################################
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA t-eoNonUniform t-eoUniform t-eoRandom t-parser
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA t-eoNonUniform t-eoUniform t-eoRandom t-parser t-eoESFull t-eoESOps t-eoAtomOps
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###############################################################################
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t_eoAtomOps_SOURCES = t-eoAtomOps.cpp
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t_eoAtomOps_DEPENDENCIES = $(DEPS)
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t_eoAtomOps_LDFLAGS = -lm
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t_eoAtomOps_LDADD = $(LDADDS)
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###############################################################################
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t_eoESOps_SOURCES = t-eoESOps.cpp
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t_eoESOps_DEPENDENCIES = $(DEPS)
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t_eoESOps_LDFLAGS = -lm
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t_eoESOps_LDADD = $(LDADDS)
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###############################################################################
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t_eoESFull_SOURCES = t-eoESFull.cpp real_value.h
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t_eoESFull_DEPENDENCIES = $(DEPS)
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t_eoESFull_LDFLAGS = -lm
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t_eoESFull_LDADD = $(LDADDS)
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###############################################################################
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@ -1,4 +1,4 @@
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# Makefile.in generated automatically by automake 1.4 from Makefile.am
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# Makefile.in generated automatically by automake 1.4a from Makefile.am
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# Copyright (C) 1994, 1995-8, 1999 Free Software Foundation, Inc.
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# This Makefile.in is free software; the Free Software Foundation
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@ -49,9 +49,10 @@ AUTOMAKE = @AUTOMAKE@
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AUTOHEADER = @AUTOHEADER@
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INSTALL = @INSTALL@
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INSTALL_PROGRAM = @INSTALL_PROGRAM@ $(AM_INSTALL_PROGRAM_FLAGS)
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INSTALL_PROGRAM = @INSTALL_PROGRAM@
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INSTALL_DATA = @INSTALL_DATA@
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INSTALL_SCRIPT = @INSTALL_SCRIPT@
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INSTALL_STRIP_FLAG =
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transform = @program_transform_name@
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NORMAL_INSTALL = :
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@ -86,7 +87,28 @@ LDADDS = $(top_builddir)/src/libeo.a
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###############################################################################
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA t-eoNonUniform t-eoUniform t-eoRandom t-parser
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noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA t-eoNonUniform t-eoUniform t-eoRandom t-parser t-eoESFull t-eoESOps t-eoAtomOps
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###############################################################################
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t_eoAtomOps_SOURCES = t-eoAtomOps.cpp
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t_eoAtomOps_DEPENDENCIES = $(DEPS)
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t_eoAtomOps_LDFLAGS = -lm
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t_eoAtomOps_LDADD = $(LDADDS)
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###############################################################################
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t_eoESOps_SOURCES = t-eoESOps.cpp
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t_eoESOps_DEPENDENCIES = $(DEPS)
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t_eoESOps_LDFLAGS = -lm
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t_eoESOps_LDADD = $(LDADDS)
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###############################################################################
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t_eoESFull_SOURCES = t-eoESFull.cpp real_value.h
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t_eoESFull_DEPENDENCIES = $(DEPS)
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t_eoESFull_LDFLAGS = -lm
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t_eoESFull_LDADD = $(LDADDS)
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###############################################################################
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@ -216,6 +238,9 @@ t_eoNonUniform_OBJECTS = t-eoNonUniform.o
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t_eoUniform_OBJECTS = t-eoUniform.o
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t_eoRandom_OBJECTS = t-eoRandom.o
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t_parser_OBJECTS = t-parser.o
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t_eoESFull_OBJECTS = t-eoESFull.o
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t_eoESOps_OBJECTS = t-eoESOps.o
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t_eoAtomOps_OBJECTS = t-eoAtomOps.o
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CXXFLAGS = @CXXFLAGS@
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CXXCOMPILE = $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
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LTCXXCOMPILE = $(LIBTOOL) --mode=compile $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
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@ -233,21 +258,16 @@ DISTFILES = $(DIST_COMMON) $(SOURCES) $(HEADERS) $(TEXINFOS) $(EXTRA_DIST)
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TAR = gtar
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GZIP_ENV = --best
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DEP_FILES = .deps/t-eo.P .deps/t-eo2dVector.P .deps/t-eoEasyEA.P \
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.deps/t-eoNonUniform.P .deps/t-eoRandom.P .deps/t-eoUniform.P \
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.deps/t-eobin.P .deps/t-eobreeder.P .deps/t-eofitness.P \
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.deps/t-eogeneration.P .deps/t-eoinclusion.P .deps/t-eoinsertion.P \
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.deps/t-eolottery.P .deps/t-eoproblem.P .deps/t-parser.P
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SOURCES = $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES) $(t_eo2dVector_SOURCES) $(t_eogeneration_SOURCES) $(t_eoEasyEA_SOURCES) $(t_eoNonUniform_SOURCES) $(t_eoUniform_SOURCES) $(t_eoRandom_SOURCES) $(t_parser_SOURCES)
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OBJECTS = $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS) $(t_eo2dVector_OBJECTS) $(t_eogeneration_OBJECTS) $(t_eoEasyEA_OBJECTS) $(t_eoNonUniform_OBJECTS) $(t_eoUniform_OBJECTS) $(t_eoRandom_OBJECTS) $(t_parser_OBJECTS)
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SOURCES = $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES) $(t_eo2dVector_SOURCES) $(t_eogeneration_SOURCES) $(t_eoEasyEA_SOURCES) $(t_eoNonUniform_SOURCES) $(t_eoUniform_SOURCES) $(t_eoRandom_SOURCES) $(t_parser_SOURCES) $(t_eoESFull_SOURCES) $(t_eoESOps_SOURCES) $(t_eoAtomOps_SOURCES)
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OBJECTS = $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS) $(t_eo2dVector_OBJECTS) $(t_eogeneration_OBJECTS) $(t_eoEasyEA_OBJECTS) $(t_eoNonUniform_OBJECTS) $(t_eoUniform_OBJECTS) $(t_eoRandom_OBJECTS) $(t_parser_OBJECTS) $(t_eoESFull_OBJECTS) $(t_eoESOps_OBJECTS) $(t_eoAtomOps_OBJECTS)
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all: all-redirect
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.SUFFIXES:
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.SUFFIXES: .S .c .cc .cpp .lo .o .s
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$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ Makefile.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
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cd $(top_srcdir) && $(AUTOMAKE) --gnu test/Makefile
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cd $(top_srcdir) && $(AUTOMAKE) --gnu --include-deps test/Makefile
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Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status $(BUILT_SOURCES)
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Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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cd $(top_builddir) \
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&& CONFIG_FILES=$(subdir)/$@ CONFIG_HEADERS= $(SHELL) ./config.status
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@ -261,6 +281,9 @@ distclean-noinstPROGRAMS:
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maintainer-clean-noinstPROGRAMS:
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.c.o:
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$(COMPILE) -c $<
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.s.o:
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$(COMPILE) -c $<
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@ -277,6 +300,9 @@ distclean-compile:
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maintainer-clean-compile:
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.c.lo:
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$(LIBTOOL) --mode=compile $(COMPILE) -c $<
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.s.lo:
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$(LIBTOOL) --mode=compile $(COMPILE) -c $<
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@ -352,6 +378,18 @@ t-eoRandom: $(t_eoRandom_OBJECTS) $(t_eoRandom_DEPENDENCIES)
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t-parser: $(t_parser_OBJECTS) $(t_parser_DEPENDENCIES)
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@rm -f t-parser
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$(CXXLINK) $(t_parser_LDFLAGS) $(t_parser_OBJECTS) $(t_parser_LDADD) $(LIBS)
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t-eoESFull: $(t_eoESFull_OBJECTS) $(t_eoESFull_DEPENDENCIES)
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@rm -f t-eoESFull
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$(CXXLINK) $(t_eoESFull_LDFLAGS) $(t_eoESFull_OBJECTS) $(t_eoESFull_LDADD) $(LIBS)
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t-eoESOps: $(t_eoESOps_OBJECTS) $(t_eoESOps_DEPENDENCIES)
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@rm -f t-eoESOps
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$(CXXLINK) $(t_eoESOps_LDFLAGS) $(t_eoESOps_OBJECTS) $(t_eoESOps_LDADD) $(LIBS)
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t-eoAtomOps: $(t_eoAtomOps_OBJECTS) $(t_eoAtomOps_DEPENDENCIES)
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@rm -f t-eoAtomOps
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$(CXXLINK) $(t_eoAtomOps_LDFLAGS) $(t_eoAtomOps_OBJECTS) $(t_eoAtomOps_LDADD) $(LIBS)
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.cc.o:
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$(CXXCOMPILE) -c $<
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.cc.lo:
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@ -395,91 +433,16 @@ distdir = $(top_builddir)/$(PACKAGE)-$(VERSION)/$(subdir)
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subdir = test
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distdir: $(DISTFILES)
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here=`cd $(top_builddir) && pwd`; \
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top_distdir=`cd $(top_distdir) && pwd`; \
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distdir=`cd $(distdir) && pwd`; \
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cd $(top_srcdir) \
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&& $(AUTOMAKE) --include-deps --build-dir=$$here --srcdir-name=$(top_srcdir) --output-dir=$$top_distdir --gnu test/Makefile
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@for file in $(DISTFILES); do \
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d=$(srcdir); \
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if test -d $$d/$$file; then \
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cp -pr $$/$$file $(distdir)/$$file; \
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cp -pr $$d/$$file $(distdir)/$$file; \
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else \
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test -f $(distdir)/$$file \
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|| ln $$d/$$file $(distdir)/$$file 2> /dev/null \
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|| cp -p $$d/$$file $(distdir)/$$file || :; \
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fi; \
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done
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DEPS_MAGIC := $(shell mkdir .deps > /dev/null 2>&1 || :)
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-include $(DEP_FILES)
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mostlyclean-depend:
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clean-depend:
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distclean-depend:
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-rm -rf .deps
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maintainer-clean-depend:
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%.o: %.c
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@echo '$(COMPILE) -c $<'; \
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$(COMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
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@-cp .deps/$(*F).pp .deps/$(*F).P; \
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tr ' ' '\012' < .deps/$(*F).pp \
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| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
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>> .deps/$(*F).P; \
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rm .deps/$(*F).pp
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%.lo: %.c
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@echo '$(LTCOMPILE) -c $<'; \
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$(LTCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
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@-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
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< .deps/$(*F).pp > .deps/$(*F).P; \
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tr ' ' '\012' < .deps/$(*F).pp \
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| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
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>> .deps/$(*F).P; \
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rm -f .deps/$(*F).pp
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%.o: %.cc
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@echo '$(CXXCOMPILE) -c $<'; \
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$(CXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
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@-cp .deps/$(*F).pp .deps/$(*F).P; \
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tr ' ' '\012' < .deps/$(*F).pp \
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| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
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>> .deps/$(*F).P; \
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rm .deps/$(*F).pp
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%.lo: %.cc
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@echo '$(LTCXXCOMPILE) -c $<'; \
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$(LTCXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
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@-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
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< .deps/$(*F).pp > .deps/$(*F).P; \
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tr ' ' '\012' < .deps/$(*F).pp \
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| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
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>> .deps/$(*F).P; \
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rm -f .deps/$(*F).pp
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%.o: %.cpp
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@echo '$(CXXCOMPILE) -c $<'; \
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$(CXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
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@-cp .deps/$(*F).pp .deps/$(*F).P; \
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tr ' ' '\012' < .deps/$(*F).pp \
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| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
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>> .deps/$(*F).P; \
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rm .deps/$(*F).pp
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%.lo: %.cpp
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@echo '$(LTCXXCOMPILE) -c $<'; \
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$(LTCXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
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@-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
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< .deps/$(*F).pp > .deps/$(*F).P; \
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tr ' ' '\012' < .deps/$(*F).pp \
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| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
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>> .deps/$(*F).P; \
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rm -f .deps/$(*F).pp
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info-am:
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info: info-am
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dvi-am:
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@ -502,7 +465,7 @@ uninstall: uninstall-am
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all-am: Makefile $(PROGRAMS)
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all-redirect: all-am
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install-strip:
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$(MAKE) $(AM_MAKEFLAGS) AM_INSTALL_PROGRAM_FLAGS=-s install
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$(MAKE) $(AM_MAKEFLAGS) INSTALL_STRIP_FLAG=-s install
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installdirs:
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@ -516,27 +479,27 @@ distclean-generic:
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maintainer-clean-generic:
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mostlyclean-am: mostlyclean-noinstPROGRAMS mostlyclean-compile \
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mostlyclean-libtool mostlyclean-tags mostlyclean-depend \
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mostlyclean-libtool mostlyclean-tags \
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mostlyclean-generic
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mostlyclean: mostlyclean-am
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clean-am: clean-noinstPROGRAMS clean-compile clean-libtool clean-tags \
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clean-depend clean-generic mostlyclean-am
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clean-generic mostlyclean-am
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clean: clean-am
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distclean-am: distclean-noinstPROGRAMS distclean-compile \
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distclean-libtool distclean-tags distclean-depend \
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distclean-generic clean-am
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distclean-libtool distclean-tags distclean-generic \
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clean-am
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-rm -f libtool
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distclean: distclean-am
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maintainer-clean-am: maintainer-clean-noinstPROGRAMS \
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maintainer-clean-compile maintainer-clean-libtool \
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maintainer-clean-tags maintainer-clean-depend \
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maintainer-clean-generic distclean-am
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maintainer-clean-tags maintainer-clean-generic \
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distclean-am
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@echo "This command is intended for maintainers to use;"
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@echo "it deletes files that may require special tools to rebuild."
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@ -547,14 +510,12 @@ clean-noinstPROGRAMS maintainer-clean-noinstPROGRAMS \
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mostlyclean-compile distclean-compile clean-compile \
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maintainer-clean-compile mostlyclean-libtool distclean-libtool \
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clean-libtool maintainer-clean-libtool tags mostlyclean-tags \
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distclean-tags clean-tags maintainer-clean-tags distdir \
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mostlyclean-depend distclean-depend clean-depend \
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maintainer-clean-depend info-am info dvi-am dvi check check-am \
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installcheck-am installcheck install-exec-am install-exec \
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install-data-am install-data install-am install uninstall-am uninstall \
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all-redirect all-am all installdirs mostlyclean-generic \
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distclean-generic clean-generic maintainer-clean-generic clean \
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mostlyclean distclean maintainer-clean
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distclean-tags clean-tags maintainer-clean-tags distdir info-am info \
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dvi-am dvi check check-am installcheck-am installcheck install-exec-am \
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install-exec install-data-am install-data install-am install \
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uninstall-am uninstall all-redirect all-am all installdirs \
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mostlyclean-generic distclean-generic clean-generic \
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maintainer-clean-generic clean mostlyclean distclean maintainer-clean
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###############################################################################
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23
eo/test/real_value.h
Normal file
23
eo/test/real_value.h
Normal file
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@ -0,0 +1,23 @@
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#include <eoESFullChrom.h>
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//-----------------------------------------------------------------------------
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typedef vector<double> Vec;
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/** Just a simple function that takes an eoVector<float> and sets the fitnes
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to -sphere (we'll see later how to minimize rather than maximize!)
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@param _ind A floatingpoint vector
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*/
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float the_real_value(Vec& _ind)
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{
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double sum = 0; /* compute in double format, even if return a float */
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for (unsigned i = 0; i < _ind.size(); i++)
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sum += _ind[i] * _ind[i];
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return -sum;
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}
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typedef eoESFullChrom<float> Ind;
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void real_value(Ind & _ind) {
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_ind.fitness( the_real_value(_ind) );
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}
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33
eo/test/t-eoAtomOps.cpp
Normal file
33
eo/test/t-eoAtomOps.cpp
Normal file
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@ -0,0 +1,33 @@
|
|||
// Program to test several EO-ES features
|
||||
|
||||
#ifdef _MSC_VER
|
||||
#pragma warning(disable:4786)
|
||||
#endif
|
||||
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <iterator>
|
||||
|
||||
using namespace std;
|
||||
|
||||
// Operators we are going to test
|
||||
#include <eoAtomCreep.h>
|
||||
#include <eoAtomBitFlip.h>
|
||||
#include <eoAtomRandom.h>
|
||||
#include <eoAtomMutation.h>
|
||||
|
||||
// Several EOs
|
||||
#include <eoString.h>
|
||||
|
||||
main(int argc, char *argv[]) {
|
||||
eoString<float> aString("123456");
|
||||
eoAtomCreep<char> creeper;
|
||||
eoAtomMutation< eoString<float> > mutator( creeper, 0.5 );
|
||||
|
||||
cout << "Before aString " << aString;
|
||||
mutator( aString);
|
||||
cout << " after mutator " << aString;
|
||||
|
||||
return 0; // to avoid VC++ complaints
|
||||
}
|
||||
|
||||
107
eo/test/t-eoESFull.cpp
Normal file
107
eo/test/t-eoESFull.cpp
Normal file
|
|
@ -0,0 +1,107 @@
|
|||
// Program to test several EO-ES features
|
||||
|
||||
#ifdef _MSC_VER
|
||||
#pragma warning(disable:4786)
|
||||
#endif
|
||||
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <iterator>
|
||||
|
||||
using namespace std;
|
||||
|
||||
// general
|
||||
#include <eoParser.h> // though contained in all others!
|
||||
// evolution specific
|
||||
#include <eoEvalFuncPtr.h>
|
||||
//#include <eoSequentialOpHolder.h>
|
||||
//#include <eoFullEA.h>
|
||||
// representation specific
|
||||
|
||||
#include <eoESFullChrom.h> // though contained in following
|
||||
//#include <eoESReco.h>
|
||||
//#include <eoESMut.h>
|
||||
//#include <eoESRandomize.h>
|
||||
// this fitness
|
||||
#include "real_value.h" // the sphere fitness
|
||||
|
||||
// Now the main
|
||||
///////////////
|
||||
typedef eoESFullChrom<float> Ind;
|
||||
|
||||
main(int argc, char *argv[]) {
|
||||
// unsigned mu, lambda;
|
||||
// bool comma;
|
||||
|
||||
// Create the command-line parser
|
||||
Parser parser( argc, argv, "Basic EA for vector<float> with adaptive mutations");
|
||||
|
||||
//reproducible random seed - thanks, Maarten
|
||||
InitRandom(parser);
|
||||
|
||||
// a first Ind, reading its parameters from the parser
|
||||
// will be used later to inialize the whole population
|
||||
Ind FirstEO(parser);
|
||||
|
||||
// Evaluation
|
||||
// here we should call some parser-based constructor,
|
||||
// as many evaluation function need parameters
|
||||
// and also have some preliminary stuffs to do
|
||||
eoEvalFuncPtr<Ind> eval( real_value );
|
||||
|
||||
/*
|
||||
// Evolution and population parameters
|
||||
eoScheme<Ind> the_scheme(parser);
|
||||
|
||||
// recombination and mutation operators, reading their parameters from the parser
|
||||
eoESReco<float> MyReco(parser, FirstEO);
|
||||
eoESMutate<float> MyMut(parser, FirstEO);
|
||||
|
||||
// termination conditions read by the parser
|
||||
eoTermVector<Ind> the_terms(parser);
|
||||
|
||||
// Initialization of the population
|
||||
// shoudl be called using the parser, in case you want to read from file(s)
|
||||
eoESRandomize<float> randomize; // an eoESInd randomnizer
|
||||
eoPop<Ind> pop(the_scheme.PopSize(), FirstEO, randomize);
|
||||
// eval(pop); // shoudl we call it from inside the constructor???
|
||||
|
||||
// ALL parmeters have been read: write them out
|
||||
// Writing the parameters on arv[0].status
|
||||
// but of course this can be modified - see the example parser.cpp
|
||||
parser.outputParam();
|
||||
// except the help parameter???
|
||||
if( parser.getBool("-h" , "--help" , "Shows this help")) {
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
|
||||
unsigned i, iind;
|
||||
|
||||
|
||||
cout << "Initial population: \n" << endl;
|
||||
for (i = 0; i < pop.size(); ++i) {
|
||||
eval(pop[i]);
|
||||
cout << pop[i].fitness() << "\t" << pop[i] << endl;
|
||||
}
|
||||
|
||||
// the Operators
|
||||
eoSequentialOpHolder <Ind> seqholder;
|
||||
// seqholder.addOp(MyReco, 1.0);
|
||||
seqholder.addOp(MyMut, 1.0);
|
||||
|
||||
// One generation
|
||||
eoEvolStep<Ind> evol_scheme(the_scheme, seqholder, eval);
|
||||
|
||||
// the algorithm:
|
||||
eoFullEA<Ind> ea(evol_scheme, the_terms);
|
||||
|
||||
ea(pop);
|
||||
|
||||
cout << "Final population: \n" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i].fitness() << "\t" << pop[i] << endl;
|
||||
*/
|
||||
return 0;
|
||||
}
|
||||
|
||||
116
eo/test/t-eoESOps.cpp
Normal file
116
eo/test/t-eoESOps.cpp
Normal file
|
|
@ -0,0 +1,116 @@
|
|||
// Program to test several EO-ES features
|
||||
|
||||
#ifdef _MSC_VER
|
||||
#pragma warning(disable:4786)
|
||||
#endif
|
||||
|
||||
#include <string>
|
||||
#include <iostream>
|
||||
#include <iterator>
|
||||
|
||||
using namespace std;
|
||||
|
||||
// general
|
||||
#include <eoParser.h> // though contained in all others!
|
||||
// evolution specific
|
||||
#include <eoEvalFuncPtr.h>
|
||||
//#include <eoSequentialOpHolder.h>
|
||||
//#include <eoFullEA.h>
|
||||
// representation specific
|
||||
|
||||
#include <eoESFullChrom.h> // though contained in following
|
||||
//#include <eoESReco.h>
|
||||
#include <eoESFullMut.h>
|
||||
//#include <eoESRandomize.h>
|
||||
// this fitness
|
||||
#include "real_value.h" // the sphere fitness
|
||||
|
||||
// Now the main
|
||||
///////////////
|
||||
typedef eoESFullChrom<float> Ind;
|
||||
|
||||
main(int argc, char *argv[]) {
|
||||
unsigned mu, lambda;
|
||||
bool comma;
|
||||
|
||||
// Create the command-line parser
|
||||
Parser parser( argc, argv, "Basic EA for vector<float> with adaptive mutations");
|
||||
|
||||
//reproducible random seed - thanks, Maarten
|
||||
InitRandom(parser);
|
||||
|
||||
// a first Ind, reading its parameters from the parser
|
||||
// will be used later to inialize the whole population
|
||||
Ind FirstEO(parser);
|
||||
|
||||
// Evaluation
|
||||
// here we should call some parser-based constructor,
|
||||
// as many evaluation function need parameters
|
||||
// and also have some preliminary stuffs to do
|
||||
eoEvalFuncPtr<Ind> eval( real_value );
|
||||
|
||||
// recombination and mutation operators, reading their parameters from the parser
|
||||
eoESMutate<float> MyMut(parser,
|
||||
FirstEO.StdDevLength(), FirstEO.size(),
|
||||
FirstEO.CorCffLength() );
|
||||
|
||||
cout << "First EO " << FirstEO << endl;
|
||||
MyMut(FirstEO);
|
||||
cout << "First EO mutated" << FirstEO << endl;
|
||||
|
||||
/*
|
||||
// Evolution and population parameters
|
||||
eoScheme<Ind> the_scheme(parser);
|
||||
|
||||
// recombination and mutation operators, reading their parameters from the parser
|
||||
eoESReco<float> MyReco(parser, FirstEO);
|
||||
eoESMutate<float> MyMut(parser, FirstEO);
|
||||
|
||||
// termination conditions read by the parser
|
||||
eoTermVector<Ind> the_terms(parser);
|
||||
|
||||
// Initialization of the population
|
||||
// shoudl be called using the parser, in case you want to read from file(s)
|
||||
eoESRandomize<float> randomize; // an eoESInd randomnizer
|
||||
eoPop<Ind> pop(the_scheme.PopSize(), FirstEO, randomize);
|
||||
// eval(pop); // shoudl we call it from inside the constructor???
|
||||
|
||||
// ALL parmeters have been read: write them out
|
||||
// Writing the parameters on arv[0].status
|
||||
// but of course this can be modified - see the example parser.cpp
|
||||
parser.outputParam();
|
||||
// except the help parameter???
|
||||
if( parser.getBool("-h" , "--help" , "Shows this help")) {
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
|
||||
unsigned i, iind;
|
||||
|
||||
|
||||
cout << "Initial population: \n" << endl;
|
||||
for (i = 0; i < pop.size(); ++i) {
|
||||
eval(pop[i]);
|
||||
cout << pop[i].fitness() << "\t" << pop[i] << endl;
|
||||
}
|
||||
|
||||
// the Operators
|
||||
eoSequentialOpHolder <Ind> seqholder;
|
||||
// seqholder.addOp(MyReco, 1.0);
|
||||
seqholder.addOp(MyMut, 1.0);
|
||||
|
||||
// One generation
|
||||
eoEvolStep<Ind> evol_scheme(the_scheme, seqholder, eval);
|
||||
|
||||
// the algorithm:
|
||||
eoFullEA<Ind> ea(evol_scheme, the_terms);
|
||||
|
||||
ea(pop);
|
||||
|
||||
cout << "Final population: \n" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i].fitness() << "\t" << pop[i] << endl;
|
||||
return 0;
|
||||
*/
|
||||
}
|
||||
|
||||
|
|
@ -1,31 +1,31 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eoNonUniform.cc
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream>
|
||||
#include <eo>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
eoNonUniform nu(1000);
|
||||
|
||||
cout << "----------------------------------------------------------" << endl
|
||||
<< "nu.step() = " << nu.step()
|
||||
<< "\t nu.num_step() = " << nu.num_step() << endl
|
||||
<< "----------------------------------------------------------" << endl;
|
||||
|
||||
eoLinear l1(0, 1, nu), l2(1, 0, nu);
|
||||
eoNegExp2 n1(0.1, 8, nu), n2(0.75, 3, nu);
|
||||
|
||||
for (; nu; ++nu)
|
||||
{
|
||||
cout << nu.step()
|
||||
<< "\t" << l1() << "\t" << l2()
|
||||
<< "\t" << n1() << "\t" << n2()
|
||||
<< endl;
|
||||
}
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eoNonUniform.cc
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream>
|
||||
#include <eo>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
eoNonUniform nu(1000);
|
||||
|
||||
cout << "----------------------------------------------------------" << endl
|
||||
<< "nu.step() = " << nu.step()
|
||||
<< "\t nu.num_step() = " << nu.num_step() << endl
|
||||
<< "----------------------------------------------------------" << endl;
|
||||
|
||||
eoLinear l1(0, 1, nu), l2(1, 0, nu);
|
||||
eoNegExp2 n1(0.1, 8, nu), n2(0.75, 3, nu);
|
||||
|
||||
for (; nu; ++nu)
|
||||
{
|
||||
cout << nu.step()
|
||||
<< "\t" << l1() << "\t" << l2()
|
||||
<< "\t" << n1() << "\t" << n2()
|
||||
<< endl;
|
||||
}
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,28 +1,29 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eouniform
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
#include <eoUniform.h> // eoBin
|
||||
#include <eoNormal.h>
|
||||
#include <eoNegExp.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main() {
|
||||
eoNormal<float> n1(-2.5,3.5);
|
||||
eoNormal<double> n2(0.003, 0.0005 );
|
||||
eoNormal<unsigned long> n3( 10000000U, 10000U);
|
||||
eoNegExp<float> e1(3.5);
|
||||
eoNegExp<double> e2(0.003 );
|
||||
eoNegExp<long> e3( 10000U);
|
||||
cout << "n1\t\tn2\t\tn3\t\te1\t\te2\t\te3" << endl;
|
||||
for ( unsigned i = 0; i < 100; i ++) {
|
||||
cout << n1() << "\t" << n2() << "\t" << n3() << "\t" <<
|
||||
e1() << "\t" << e2() << "\t" << e3() << endl;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eouniform
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
#include <eoUniform.h> // eoBin
|
||||
#include <eoNormal.h>
|
||||
#include <eoNegExp.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main() {
|
||||
eoNormal<float> n1(-2.5,3.5);
|
||||
eoNormal<double> n2(0.003, 0.0005 );
|
||||
eoNormal<unsigned long> n3( 10000000U, 10000U);
|
||||
eoNegExp<float> e1(3.5);
|
||||
eoNegExp<double> e2(0.003 );
|
||||
eoNegExp<long> e3( 10000U);
|
||||
cout << "n1\t\tn2\t\tn3\t\te1\t\te2\t\te3" << endl;
|
||||
for ( unsigned i = 0; i < 100; i ++) {
|
||||
cout << n1() << "\t" << n2() << "\t" << n3() << "\t" <<
|
||||
e1() << "\t" << e2() << "\t" << e3() << endl;
|
||||
}
|
||||
|
||||
return 0; // to avoid VC++ complaints
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,22 +1,22 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eouniform
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
#include <eoUniform.h> // eoBin
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main() {
|
||||
eoUniform<float> u1(-2.5,3.5);
|
||||
eoUniform<double> u2(0.003, 0 );
|
||||
eoUniform<unsigned long> u3( 10000U, 10000000U);
|
||||
cout << "u1\t\tu2\t\tu3" << endl;
|
||||
for ( unsigned i = 0; i < 100; i ++) {
|
||||
cout << u1() << "\t" << u2() << "\t" << u3() << endl;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eouniform
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <iostream> // cout
|
||||
#include <strstream> // ostrstream, istrstream
|
||||
#include <eoUniform.h> // eoBin
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main() {
|
||||
eoUniform<float> u1(-2.5,3.5);
|
||||
eoUniform<double> u2(0.003, 0 );
|
||||
eoUniform<unsigned long> u3( 10000U, 10000000U);
|
||||
cout << "u1\t\tu2\t\tu3" << endl;
|
||||
for ( unsigned i = 0; i < 100; i ++) {
|
||||
cout << u1() << "\t" << u2() << "\t" << u3() << endl;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,71 +1,71 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eobreeder.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eobreeder.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
// to avoid long name warnings
|
||||
#pragma warning(disable:4786)
|
||||
|
||||
#include <eoBin.h> // eoBin, eoPop, eoBreeder
|
||||
|
||||
#include <eoBin.h> // eoBin, eoPop, eoBreeder
|
||||
#include <eoPop.h>
|
||||
#include <eoBitOp.h>
|
||||
#include <eoProportionalOpSel.h>
|
||||
#include <eoBreeder.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
void binary_value(Chrom& chrom)
|
||||
{
|
||||
float sum = 0;
|
||||
for (unsigned i = 0; i < chrom.size(); i++)
|
||||
if (chrom[i])
|
||||
sum += pow(2, chrom.size() - i - 1);
|
||||
chrom.fitness(sum);
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 4;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
eoProportionalOpSel<Chrom> propSel;
|
||||
eoBreeder<Chrom> breeder( propSel );
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
breeder(pop);
|
||||
|
||||
// reevaluation of fitness
|
||||
for_each(pop.begin(), pop.end(), binary_value);
|
||||
|
||||
cout << "new population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
void binary_value(Chrom& chrom)
|
||||
{
|
||||
float sum = 0;
|
||||
for (unsigned i = 0; i < chrom.size(); i++)
|
||||
if (chrom[i])
|
||||
sum += pow(2, chrom.size() - i - 1);
|
||||
chrom.fitness(sum);
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 4;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
eoProportionalOpSel<Chrom> propSel;
|
||||
eoBreeder<Chrom> breeder( propSel );
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
breeder(pop);
|
||||
|
||||
// reevaluation of fitness
|
||||
for_each(pop.begin(), pop.end(), binary_value);
|
||||
|
||||
cout << "new population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,87 +1,87 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eofitness.cpp
|
||||
// (c) GeNeura Team 1998
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <time.h> // time
|
||||
#include <stdlib.h> // srand, rand
|
||||
#include <iostream> // cout
|
||||
#include <eo> // eoFitness
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
class eoFloat: public eoFitness
|
||||
{
|
||||
public:
|
||||
eoFloat(const float x) { fitness = x; }
|
||||
eoFloat(const int x) { fitness = static_cast<float>(x); }
|
||||
|
||||
bool operator<(const eoFitness& other) const
|
||||
{
|
||||
const eoFloat& x = (const eoFloat&) other;
|
||||
return fitness < x.fitness;
|
||||
}
|
||||
|
||||
operator float() const
|
||||
{
|
||||
return fitness;
|
||||
}
|
||||
|
||||
void printOn(ostream& os) const
|
||||
{
|
||||
os << fitness;
|
||||
}
|
||||
|
||||
void readFrom(istream& is)
|
||||
{
|
||||
is >> fitness;
|
||||
}
|
||||
|
||||
private:
|
||||
float fitness;
|
||||
};
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
srand(time(0));
|
||||
|
||||
eoFloat a = static_cast<float>(rand()) / RAND_MAX,
|
||||
b = static_cast<float>(rand()) / RAND_MAX;
|
||||
|
||||
cout.precision(2);
|
||||
|
||||
unsigned repeat = 2;
|
||||
while (repeat--)
|
||||
{
|
||||
cout << "------------------------------------------------------" << endl;
|
||||
cout << "testing < ";
|
||||
if (a < b)
|
||||
cout << a << " < " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " < " << b << " is false" <<endl;
|
||||
|
||||
cout << "testing > ";
|
||||
if (a > b)
|
||||
cout << a << " > " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " > " << b << " is false" <<endl;
|
||||
|
||||
cout << "testing == ";
|
||||
if (a == b)
|
||||
cout << a << " == " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " == " << b << " is false" <<endl;
|
||||
|
||||
cout << "testing != ";
|
||||
if (a != b)
|
||||
cout << a << " != " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " != " << b << " is false" <<endl;
|
||||
|
||||
a = b;
|
||||
}
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eofitness.cpp
|
||||
// (c) GeNeura Team 1998
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <time.h> // time
|
||||
#include <stdlib.h> // srand, rand
|
||||
#include <iostream> // cout
|
||||
#include <eo> // eoFitness
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
class eoFloat: public eoFitness
|
||||
{
|
||||
public:
|
||||
eoFloat(const float x) { fitness = x; }
|
||||
eoFloat(const int x) { fitness = static_cast<float>(x); }
|
||||
|
||||
bool operator<(const eoFitness& other) const
|
||||
{
|
||||
const eoFloat& x = (const eoFloat&) other;
|
||||
return fitness < x.fitness;
|
||||
}
|
||||
|
||||
operator float() const
|
||||
{
|
||||
return fitness;
|
||||
}
|
||||
|
||||
void printOn(ostream& os) const
|
||||
{
|
||||
os << fitness;
|
||||
}
|
||||
|
||||
void readFrom(istream& is)
|
||||
{
|
||||
is >> fitness;
|
||||
}
|
||||
|
||||
private:
|
||||
float fitness;
|
||||
};
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
srand(time(0));
|
||||
|
||||
eoFloat a = static_cast<float>(rand()) / RAND_MAX,
|
||||
b = static_cast<float>(rand()) / RAND_MAX;
|
||||
|
||||
cout.precision(2);
|
||||
|
||||
unsigned repeat = 2;
|
||||
while (repeat--)
|
||||
{
|
||||
cout << "------------------------------------------------------" << endl;
|
||||
cout << "testing < ";
|
||||
if (a < b)
|
||||
cout << a << " < " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " < " << b << " is false" <<endl;
|
||||
|
||||
cout << "testing > ";
|
||||
if (a > b)
|
||||
cout << a << " > " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " > " << b << " is false" <<endl;
|
||||
|
||||
cout << "testing == ";
|
||||
if (a == b)
|
||||
cout << a << " == " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " == " << b << " is false" <<endl;
|
||||
|
||||
cout << "testing != ";
|
||||
if (a != b)
|
||||
cout << a << " != " << b << " is true" << endl;
|
||||
else
|
||||
cout << a << " != " << b << " is false" <<endl;
|
||||
|
||||
a = b;
|
||||
}
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,82 +1,82 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eogeneration.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
// to avoid long name warnings
|
||||
#pragma warning(disable:4786)
|
||||
|
||||
#include <eo>
|
||||
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 16;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
|
||||
// selection
|
||||
eoLottery<Chrom> lottery;
|
||||
|
||||
// breeder
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
eoProportionalOpSel<Chrom> propSel;
|
||||
eoBreeder<Chrom> breeder( propSel );
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
// replacement
|
||||
eoInclusion<Chrom> inclusion;
|
||||
|
||||
// Evaluation
|
||||
eoEvalFuncPtr<Chrom> eval( binary_value );
|
||||
|
||||
// GA generation
|
||||
eoGeneration<Chrom> generation(lottery, breeder, inclusion, eval);
|
||||
|
||||
// evolution
|
||||
unsigned g = 0;
|
||||
do {
|
||||
try
|
||||
{
|
||||
generation(pop);
|
||||
}
|
||||
catch (exception& e)
|
||||
{
|
||||
cout << "exception: " << e.what() << endl;;
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
|
||||
cout << "pop[" << ++g << "]" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
} while (pop[0].fitness() < pow(2.0, CHROM_SIZE) - 1);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eogeneration.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
// to avoid long name warnings
|
||||
#pragma warning(disable:4786)
|
||||
|
||||
#include <eo>
|
||||
|
||||
#include "binary_value.h"
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned POP_SIZE = 8, CHROM_SIZE = 16;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; ++i)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "population:" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
|
||||
// selection
|
||||
eoLottery<Chrom> lottery;
|
||||
|
||||
// breeder
|
||||
eoBinBitFlip<Chrom> bitflip;
|
||||
eoBinCrossover<Chrom> xover;
|
||||
eoProportionalOpSel<Chrom> propSel;
|
||||
eoBreeder<Chrom> breeder( propSel );
|
||||
propSel.addOp(bitflip, 0.25);
|
||||
propSel.addOp(xover, 0.75);
|
||||
|
||||
// replacement
|
||||
eoInclusion<Chrom> inclusion;
|
||||
|
||||
// Evaluation
|
||||
eoEvalFuncPtr<Chrom> eval( binary_value );
|
||||
|
||||
// GA generation
|
||||
eoGeneration<Chrom> generation(lottery, breeder, inclusion, eval);
|
||||
|
||||
// evolution
|
||||
unsigned g = 0;
|
||||
do {
|
||||
try
|
||||
{
|
||||
generation(pop);
|
||||
}
|
||||
catch (exception& e)
|
||||
{
|
||||
cout << "exception: " << e.what() << endl;;
|
||||
exit(EXIT_FAILURE);
|
||||
}
|
||||
|
||||
cout << "pop[" << ++g << "]" << endl;
|
||||
for (i = 0; i < pop.size(); ++i)
|
||||
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
|
||||
|
||||
} while (pop[0].fitness() < pow(2.0, CHROM_SIZE) - 1);
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,108 +1,108 @@
|
|||
//-----------------------------------------------------------------------------
|
||||
// t-eoinsertion.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <eo> // eoBin, eoPop, eoInsertion
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
void binary_value(Chrom& chrom)
|
||||
{
|
||||
float sum = 0;
|
||||
for (unsigned i = 0; i < chrom.size(); i++)
|
||||
if (chrom[i])
|
||||
sum += pow(2, chrom.size() - i - 1);
|
||||
chrom.fitness(sum);
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned CHROM_SIZE = 4;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
|
||||
for (unsigned POP_SIZE = 4; POP_SIZE <=6; POP_SIZE++)
|
||||
{
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; i++)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
for (unsigned POP2_SIZE = 4; POP2_SIZE <=6; POP2_SIZE++)
|
||||
{
|
||||
eoPop<Chrom> pop2, pop3, pop4, pop5, popx;
|
||||
|
||||
for (i = 0; i < POP2_SIZE; i++)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop2.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "--------------------------------------------------" << endl
|
||||
<< "breeders \tpop" << endl
|
||||
<< "--------------------------------------------------" << endl;
|
||||
for (i = 0; i < max(pop.size(), pop2.size()); i++)
|
||||
{
|
||||
if (pop.size() > i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << " \t";
|
||||
else
|
||||
cout << "\t\t";
|
||||
if (pop2.size() > i)
|
||||
cout << pop2[i] << " " << pop2[i].fitness();
|
||||
cout << endl;
|
||||
}
|
||||
|
||||
eoInsertion<Chrom> insertion(0.75);
|
||||
popx = pop;
|
||||
pop3 = pop2;
|
||||
insertion(popx, pop3);
|
||||
|
||||
eoInsertion<Chrom> insertion2;
|
||||
popx = pop;
|
||||
pop4 = pop2;
|
||||
insertion2(popx, pop4);
|
||||
|
||||
eoInsertion<Chrom> insertion3(1.5);
|
||||
popx = pop;
|
||||
pop5 = pop2;
|
||||
insertion3(popx, pop5);
|
||||
|
||||
cout << endl
|
||||
<< "0.75 \t\t1.0 \t\t1.5" << endl
|
||||
<< "---- \t\t--- \t\t---" << endl;
|
||||
for (i = 0; i < pop5.size(); i++)
|
||||
{
|
||||
if (pop3.size() > i)
|
||||
cout << pop3[i] << " " << pop3[i].fitness() << " \t";
|
||||
else
|
||||
cout << " \t\t";
|
||||
if (pop4.size() > i)
|
||||
cout << pop4[i] << " " << pop4[i].fitness() << " \t";
|
||||
else
|
||||
cout << " \t\t";
|
||||
if (pop5.size() > i)
|
||||
cout << pop5[i] << " " << pop5[i].fitness();
|
||||
cout << endl;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//-----------------------------------------------------------------------------
|
||||
// t-eoinsertion.cpp
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <eo> // eoBin, eoPop, eoInsertion
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
typedef eoBin<float> Chrom;
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
void binary_value(Chrom& chrom)
|
||||
{
|
||||
float sum = 0;
|
||||
for (unsigned i = 0; i < chrom.size(); i++)
|
||||
if (chrom[i])
|
||||
sum += pow(2, chrom.size() - i - 1);
|
||||
chrom.fitness(sum);
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
main()
|
||||
{
|
||||
const unsigned CHROM_SIZE = 4;
|
||||
unsigned i;
|
||||
|
||||
eoUniform<Chrom::Type> uniform(false, true);
|
||||
eoBinRandom<Chrom> random;
|
||||
|
||||
for (unsigned POP_SIZE = 4; POP_SIZE <=6; POP_SIZE++)
|
||||
{
|
||||
eoPop<Chrom> pop;
|
||||
|
||||
for (i = 0; i < POP_SIZE; i++)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop.push_back(chrom);
|
||||
}
|
||||
|
||||
for (unsigned POP2_SIZE = 4; POP2_SIZE <=6; POP2_SIZE++)
|
||||
{
|
||||
eoPop<Chrom> pop2, pop3, pop4, pop5, popx;
|
||||
|
||||
for (i = 0; i < POP2_SIZE; i++)
|
||||
{
|
||||
Chrom chrom(CHROM_SIZE);
|
||||
random(chrom);
|
||||
binary_value(chrom);
|
||||
pop2.push_back(chrom);
|
||||
}
|
||||
|
||||
cout << "--------------------------------------------------" << endl
|
||||
<< "breeders \tpop" << endl
|
||||
<< "--------------------------------------------------" << endl;
|
||||
for (i = 0; i < max(pop.size(), pop2.size()); i++)
|
||||
{
|
||||
if (pop.size() > i)
|
||||
cout << pop[i] << " " << pop[i].fitness() << " \t";
|
||||
else
|
||||
cout << "\t\t";
|
||||
if (pop2.size() > i)
|
||||
cout << pop2[i] << " " << pop2[i].fitness();
|
||||
cout << endl;
|
||||
}
|
||||
|
||||
eoInsertion<Chrom> insertion(0.75);
|
||||
popx = pop;
|
||||
pop3 = pop2;
|
||||
insertion(popx, pop3);
|
||||
|
||||
eoInsertion<Chrom> insertion2;
|
||||
popx = pop;
|
||||
pop4 = pop2;
|
||||
insertion2(popx, pop4);
|
||||
|
||||
eoInsertion<Chrom> insertion3(1.5);
|
||||
popx = pop;
|
||||
pop5 = pop2;
|
||||
insertion3(popx, pop5);
|
||||
|
||||
cout << endl
|
||||
<< "0.75 \t\t1.0 \t\t1.5" << endl
|
||||
<< "---- \t\t--- \t\t---" << endl;
|
||||
for (i = 0; i < pop5.size(); i++)
|
||||
{
|
||||
if (pop3.size() > i)
|
||||
cout << pop3[i] << " " << pop3[i].fitness() << " \t";
|
||||
else
|
||||
cout << " \t\t";
|
||||
if (pop4.size() > i)
|
||||
cout << pop4[i] << " " << pop4[i].fitness() << " \t";
|
||||
else
|
||||
cout << " \t\t";
|
||||
if (pop5.size() > i)
|
||||
cout << pop5[i] << " " << pop5[i].fitness();
|
||||
cout << endl;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
|
|
|||
|
|
@ -1,165 +1,133 @@
|
|||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
/* parser.cpp
|
||||
example of use of Parser.h
|
||||
|
||||
(c) geneura team, 1999
|
||||
-----------------------------------------------------------------------------*/
|
||||
|
||||
#include <eoParser.h>
|
||||
#include <eoRNG.h>
|
||||
#include <sys/time.h>
|
||||
|
||||
void GetOutputParam(Parser & parser,
|
||||
string & _string) {
|
||||
|
||||
try {
|
||||
parser.AddTitle("Separate parameter: the output file name");
|
||||
_string = parser.getString("-O", "--OutputFile", "", "The output file name" );
|
||||
} catch (UException & e) {
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
} catch (exception & e) {
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
}
|
||||
|
||||
void sub(Parser & parser) {
|
||||
int i;
|
||||
cout << "Function sub:" << endl;
|
||||
|
||||
try {
|
||||
parser.AddTitle("Private parameters of subroutine sub");
|
||||
i = parser.getInt("-j", "--sint", "5", "private integer of subroutine" );
|
||||
} catch (UException & e) {
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
} catch (exception & e) {
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
|
||||
cout << "Read " << i << endl;
|
||||
}
|
||||
|
||||
|
||||
/// Uses the parser and returns param values
|
||||
void getParams( Parser & parser,
|
||||
unsigned & _integer,
|
||||
float & _floating,
|
||||
string & _string,
|
||||
vector<string> & _array,
|
||||
bool & _boolean) {
|
||||
|
||||
try {
|
||||
_integer = parser.getInt("-i", "--int", "2", "interger number" );
|
||||
_floating = parser.getFloat("-f", "--float", "0.2", "floating point number" );
|
||||
_string = parser.getString("-s", "--string", "string", "a string" );
|
||||
_array = parser.getArray("-a", "--array", "a b", "an array enclosed within < >" );
|
||||
_boolean = parser.getBool("-b","--bool", "a bool value" );
|
||||
}
|
||||
catch (UException & e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
catch (exception & e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
/// Uses the parser and returns param values
|
||||
void InitRandom( Parser & parser) {
|
||||
unsigned long _seed;
|
||||
try {
|
||||
_seed = parser.getUnsignedLong("-S", "--seed", "0", "Seed for Random number generator" );
|
||||
}
|
||||
catch (UException & e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
catch (exception & e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
if (_seed == 0) { // use clock to get a "random" seed
|
||||
struct timeval tval;
|
||||
struct timezone tzp;
|
||||
|
||||
gettimeofday (&tval, &tzp); // time since midnight January 1, 1970.
|
||||
_seed = tval.tv_usec ; // micro seconds
|
||||
char s[32];
|
||||
sprintf(s,"%ld", _seed);
|
||||
parser.setParamValue("--seed", s); // so it will be printed out in the status file, and canbe later re-used to re-run EXACTLY the same run
|
||||
}
|
||||
rng.reseed(_seed);
|
||||
|
||||
return;
|
||||
}
|
||||
|
||||
int main( int argc, char* argv[]) {
|
||||
|
||||
unsigned in;
|
||||
float f;
|
||||
string s;
|
||||
vector<string> a;
|
||||
bool b;
|
||||
|
||||
// Create the command-line parser
|
||||
Parser parser( argc, argv, "Parser example");
|
||||
InitRandom(parser);
|
||||
parser.AddTitle("General parameters");
|
||||
getParams(parser, in, f, s, a, b);
|
||||
|
||||
cout << "\n integer: " << in << endl
|
||||
<< " float: "<< f << endl
|
||||
<< " string: /"<< s << "/" << endl
|
||||
<< " boolean: "<< b << endl
|
||||
<< " array: < ";
|
||||
vector<string>::const_iterator i;
|
||||
for (i=a.begin() ; i<a.end() ; i++) {
|
||||
cout << *i << " ";
|
||||
}
|
||||
cout << ">" << endl << endl ;
|
||||
|
||||
// call to the subroutine that also needs some parameters
|
||||
sub(parser);
|
||||
|
||||
// writing all parameters
|
||||
//
|
||||
// if programmer wishes, the name of the output file can be set as a parameter itself
|
||||
// otherwise it will be argv[0].status
|
||||
string OutputFileName;
|
||||
GetOutputParam(parser, OutputFileName);
|
||||
|
||||
parser.outputParam(OutputFileName);
|
||||
if( parser.getBool("-h" , "--help" , "Shows this help")) {
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
|
||||
// but progrmamer should be careful to write the parser parameters
|
||||
// after the last bit that uses it has finished
|
||||
|
||||
|
||||
// Now the main body of the program
|
||||
|
||||
for (int i=0; i<20; i++) {
|
||||
cout << rng.normal() << endl;
|
||||
}
|
||||
cout << "C'est fini" << endl;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
/* parser.cpp
|
||||
example of use of Parser.h
|
||||
|
||||
(c) geneura team, 1999
|
||||
-----------------------------------------------------------------------------*/
|
||||
|
||||
#include <eoParser.h>
|
||||
#include <eoRNG.h>
|
||||
#include <sys/time.h>
|
||||
|
||||
void GetOutputParam(Parser & parser,
|
||||
string & _string) {
|
||||
|
||||
try {
|
||||
parser.AddTitle("Separate parameter: the output file name");
|
||||
_string = parser.getString("-O", "--OutputFile", "", "The output file name" );
|
||||
} catch (UException & e) {
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
} catch (exception & e) {
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
}
|
||||
|
||||
void sub(Parser & parser) {
|
||||
int i;
|
||||
cout << "Function sub:" << endl;
|
||||
|
||||
try {
|
||||
parser.AddTitle("Private parameters of subroutine sub");
|
||||
i = parser.getInt("-j", "--sint", "5", "private integer of subroutine" );
|
||||
} catch (UException & e) {
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
} catch (exception & e) {
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
|
||||
cout << "Read " << i << endl;
|
||||
}
|
||||
|
||||
|
||||
/// Uses the parser and returns param values
|
||||
void getParams( Parser & parser,
|
||||
unsigned & _integer,
|
||||
float & _floating,
|
||||
string & _string,
|
||||
vector<string> & _array,
|
||||
bool & _boolean) {
|
||||
|
||||
try {
|
||||
_integer = parser.getInt("-i", "--int", "2", "interger number" );
|
||||
_floating = parser.getFloat("-f", "--float", "0.2", "floating point number" );
|
||||
_string = parser.getString("-s", "--string", "string", "a string" );
|
||||
_array = parser.getArray("-a", "--array", "a b", "an array enclosed within < >" );
|
||||
_boolean = parser.getBool("-b","--bool", "a bool value" );
|
||||
}
|
||||
catch (UException & e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
catch (exception & e)
|
||||
{
|
||||
cout << e.what() << endl;
|
||||
exit(1);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
int main( int argc, char* argv[]) {
|
||||
|
||||
unsigned in;
|
||||
float f;
|
||||
string s;
|
||||
vector<string> a;
|
||||
bool b;
|
||||
|
||||
// Create the command-line parser
|
||||
Parser parser( argc, argv, "Parser example");
|
||||
InitRandom(parser);
|
||||
parser.AddTitle("General parameters");
|
||||
getParams(parser, in, f, s, a, b);
|
||||
|
||||
cout << "\n integer: " << in << endl
|
||||
<< " float: "<< f << endl
|
||||
<< " string: /"<< s << "/" << endl
|
||||
<< " boolean: "<< b << endl
|
||||
<< " array: < ";
|
||||
vector<string>::const_iterator i;
|
||||
for (i=a.begin() ; i<a.end() ; i++) {
|
||||
cout << *i << " ";
|
||||
}
|
||||
cout << ">" << endl << endl ;
|
||||
|
||||
// call to the subroutine that also needs some parameters
|
||||
sub(parser);
|
||||
|
||||
// writing all parameters
|
||||
//
|
||||
// if programmer wishes, the name of the output file can be set as a parameter itself
|
||||
// otherwise it will be argv[0].status
|
||||
string OutputFileName;
|
||||
GetOutputParam(parser, OutputFileName);
|
||||
|
||||
parser.outputParam(OutputFileName);
|
||||
if( parser.getBool("-h" , "--help" , "Shows this help")) {
|
||||
parser.printHelp();
|
||||
exit(1);
|
||||
}
|
||||
|
||||
// but progrmamer should be careful to write the parser parameters
|
||||
// after the last bit that uses it has finished
|
||||
|
||||
|
||||
// Now the main body of the program
|
||||
|
||||
for (int i=0; i<20; i++) {
|
||||
cout << rng.normal() << endl;
|
||||
}
|
||||
cout << "C'est fini" << endl;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
|
|
|
|||
Reference in a new issue