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The source file names had changed, some day, in doxygen-genertaed doc ...

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evomarc 2002-03-15 06:28:25 +00:00
commit 414eafa277
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12
eo/tutorial/html/eoEngine.html
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@ -2,7 +2,7 @@
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
<meta name="GENERATOR" content="Mozilla/4.75 [en] (X11; U; Linux 2.2.17-21mdk i686) [Netscape]">
<meta name="GENERATOR" content="Mozilla/4.78 [en] (X11; U; Linux 2.4.7-10 i686) [Netscape]">
<title>Genetic Engine</title>
</head>
<body text="#000000" link="#0000EF" vlink="#51188E" alink="#FF0000" background="beige009.jpg">
@ -241,6 +241,8 @@ and you can probably guess what each of them actually does :-)</li>
<br>&nbsp;
<p>&nbsp;
<br>&nbsp;
<br>&nbsp;
<p>Available <font color="#FF6600">instances of eoMergeReduce</font> replacement
include
<ul>
@ -310,7 +312,9 @@ size. Available instances of <b><tt><font color="#009900">eoSurviveAndDieReplace
are limited todayto the <b><tt><font color="#009900">eoDeterministicSaDReplacement</font></tt></b>,
the&nbsp; that uses a deterministic MergeReduce.</li>
<p><br><b><font color="#FF0000">Note</font></b>: The basic use (and initial
<br>&nbsp;
<p>&nbsp;
<p><b><font color="#FF0000">Note</font></b>: The basic use (and initial
motivation) for <b><tt><font color="#009900">eoSurviveAndDie</font></tt></b>
takes 2 arguments, an eoMergeReduce and a number of surviving parents.
It starts by copying the best parents to the new populations, then merges
@ -457,7 +461,7 @@ is implemented in the <b><tt><font color="#009900">eoDetTournamentSelect</font><
class, a sub-class of eoSelectOne, as well as in the <b><tt><font color="#009900">eoDetTournamentTruncate</font></tt></b>
class that repeatidly removes from the population the "winner" of the inverse
tournament.&nbsp; These objects use the C++ function determinitic_tournament
in&nbsp; <a href="../../doc/html/selectors_h-source.html">selectors.h</a>.</li>
in&nbsp; <a href="../../doc/html/selectors_8h-source.html">selectors.h</a>.</li>
<li>
<a NAME="stochTournament"></a><b><tt><font color="#009900">Stochastic Tournament</font></tt></b>
@ -467,7 +471,7 @@ parameter R should be in [0.5,1]. It is implemented in the <b><tt><font color="#
class, a sub-class of eoSelectOne, as well as in the <b><tt><font color="#009900">eoStochTournamentTruncate</font></tt></b>
class that repeatidly removes from the population the "winner" of the inverse
tournament.&nbsp; These objects use the C++ function determinitic_tournament
in&nbsp; <a href="../../doc/html/selectors_h-source.html">selectors.h</a>.</li>
in&nbsp; <a href="../../doc/html/selectors_8h-source.html">selectors.h</a>.</li>
<br><b><font color="#FF0000">Note</font></b>: A stochastic tournament with
rate 1.0 is strictly identical to a deterministic tournament of size 2.

32
eo/tutorial/html/eoOperators.html
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@ -157,19 +157,15 @@ any useful argument</font></tt>
the candidates to crossover</font></tt>
<br><b><tt><font color="#993300">if (myBinOp(eo1, eo2))</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp;&nbsp; { ...&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</b>// eo1 has been modified, <b>not</b> eo2</font></tt>
<br><b><tt><font color="#993300">&nbsp;&nbsp; }</font></tt></b>
<br><tt><font color="#993300"><b>else ...&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</b>// none has been modified</font></tt>
<br><b><tt><font color="#993300">if (myQuadOp(eo1, eo2))</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp;&nbsp; { ...&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</b>// both eo1 and eo2 have been modified</font></tt>
<br><b><tt><font color="#993300">&nbsp;&nbsp; }</font></tt></b>
<br><tt><font color="#993300"><b>else ...&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</b>// none has been modified</font></tt>
<p>However, you will hardly have to actually apply operators to individuals,
as operators are used within other classes, and are applied systematically
@ -228,8 +224,7 @@ above:
<br><tt><font color="#993300"><b>&nbsp;&nbsp; { ...&nbsp;&nbsp;&nbsp; </b>//
eo has been modified</font></tt>
<br><b><tt><font color="#993300">&nbsp;&nbsp; }</font></tt></b>
<br><tt><font color="#993300"><b>else&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</b>//
<br><tt><font color="#993300"><b>else&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </b>//
eo has not been modified</font></tt>
<p>However, you will hardly have to actually apply operators to individuals,
as operators are used within other classes, and are applied systematically
@ -311,8 +306,7 @@ _pop)</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp;&nbsp; EOT&amp; parent1 = *_pop;
</b>//
select the first parent</font></tt>
<br><tt><font color="#993300"><b>&nbsp;&nbsp; ++_plop;&nbsp;&nbsp;
</b>//
<br><tt><font color="#993300"><b>&nbsp;&nbsp; ++_plop;&nbsp;&nbsp; </b>//
advance once for each selected parents</font></tt>
<br><b><tt><font color="#993300">&nbsp;&nbsp; ...</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp;&nbsp; EOT&amp; parentN = *_pop;
@ -357,7 +351,9 @@ were parents</font>, it needs to insert them into the list using the <b><tt><fon
method of the class <b><font color="#999900">eoPopulator</font></b> as
in the following:</li>
<p><br><b><tt><font color="#993300">void apply()(</font><font color="#999900">eoPopulator</font><font color="#993300">&amp;
<br>&nbsp;
<p>&nbsp;
<p><b><tt><font color="#993300">void apply()(</font><font color="#999900">eoPopulator</font><font color="#993300">&amp;
_pop)</font></tt></b>
<br><b><tt><font color="#993300">{</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp; </b>// get the necessary number
@ -395,8 +391,10 @@ outside the curent list, so the total number of (intermediate) offspring
is always equal to the initial population size. By chance, the <b><font color="#999900">eoPopulator</font></b>has
a handle on the initial population that was used to start the process,
and you can access it from inside the GenOp method. For instance</li>
<b><tt><font color="#993300"></font></tt></b>
<p><br><b><tt><font color="#993300">void apply()(</font><font color="#999900">eoPopulator</font><font color="#993300">&amp;
<br>&nbsp;
<p>&nbsp;
<p><b><tt><font color="#993300">void apply()(</font><font color="#999900">eoPopulator</font><font color="#993300">&amp;
_pop)</font></tt></b>
<br><b><tt><font color="#993300">{</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp; </b>// get as many parents as you
@ -427,8 +425,10 @@ If you don't care about the size of the offspring population (that is,
if that size os controlled elsewhere, e.g. in some external loop), you
can use the inbedded select method of the class <b><font color="#999900">eoPopulator</font></b>.
For instance</li>
<b><tt><font color="#993300"></font></tt></b>
<p><br><b><tt><font color="#993300">void apply()(</font><font color="#999900">eoPopulator</font><font color="#993300">&amp;
<br>&nbsp;
<p>&nbsp;
<p><b><tt><font color="#993300">void apply()(</font><font color="#999900">eoPopulator</font><font color="#993300">&amp;
_pop)</font></tt></b>
<br><b><tt><font color="#993300">{</font></tt></b>
<br><tt><font color="#993300"><b>&nbsp; </b>// get as many parents as you
@ -569,7 +569,7 @@ to apply the variation operators to the population, and thus get exactly
the number of offspring you want.
<p><b><font color="#FF0000">Example</font></b>: An <b><font color="#CC33CC">eoSelectivePopulator</font></b>
is the main ingredient of the <b><tt><font color="#FF6666">eoGeneralBreeder
</font></tt></b><a href="../../doc/html/eogeneralbreeder_h-source.html#l00061">operator()
</font></tt></b><a href="../../doc/html/eo_general_breeder_8h-source.html#l00061">operator()
method</a> - a class that creates a population of offspring from the parents
applying an eoGenOp (usually an eoOpContainer) to all selected parents
in turn.
@ -687,9 +687,9 @@ Gen</font></b>:
rate: double whose <b>meaning depends on YYY</b></font></tt>
<p>where YYY can be one of Proportional and Sequential. Note that before
being added to the container, all simple operators are wrapped into the
corresponding eoGenOp (see e.g. how an <b><font color="#CC33CC">eoMonOp</font></b><a href="../../doc/html/eogenop_h-source.html#l00079">is
corresponding eoGenOp (see e.g. how an <b><font color="#CC33CC">eoMonOp</font></b><a href="../../doc/html/eo_gen_op_8h-source.html#l00084">is
wrapped</a> into an <b><font color="#CC33CC">eoMonGenOp</font></b>- or
how <a href="../../doc/html/eogenop_h-source.html#l00169">any operator
how <a href="../../doc/html/eo_gen_op_8h-source.html#l00169">any operator
is handled</a> by calling the appropriate wrapper). In particular, the
wrapper ensures that <b><font color="#FF6600">individuals who have been
modified are invalidated</font></b>.

6
eo/tutorial/html/eoProgramming.html
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@ -312,7 +312,7 @@ numbers who look random (w.r.t. some statistical criteria).
to ensure reproducibility of the results across different platforms, EO
has its own RNG, the ``<font color="#FF6600">Mersenne Twister</font>''
random number generator MT19937 (thanks to <font color="#FF0000">Takuji
Nishimura</font>, see <font face="Arial,Helvetica"><font size=+1><a href="../../doc/html/eorng_h-source.html">eoRNG.h</a></font></font>
Nishimura</font>, see <font face="Arial,Helvetica"><font size=+1><a href="../../doc/html/eo_r_n_g_8h-source.html">eoRNG.h</a></font></font>
comments).
<p>Though you can define and use as many RNGs as you wish in EO, the library
also provides you with a global RNG termed <b><tt><font color="#993300">eo::rng</font></tt></b>.
@ -340,7 +340,7 @@ following <b><font color="#FF6600">different probability distribution</font></b>
(e.g. floating point following <font face="Arial,Helvetica"><font size=+1><a href="../../doc/html/classeo_rng.html#a8">normal
distribution</a></font></font>). See the <a href="../../doc/html/classeo_rng.html">complete
list of RNG primitives</a>.
<p>EO also provides <a href="../../doc/html/rnd_generators_h-source.html">random_generators</a>
<p>EO also provides <a href="../../doc/html/rnd__generators_8h-source.html">random_generators</a>
that can be used in STL call to generate series of random numbers, as in
<a href="eoInit.html">eoPop
initializers</a>.
@ -377,6 +377,8 @@ names of the variables they are used to initialize, e.g.</li>
<br>&nbsp;
<p>&nbsp;
<br>&nbsp;
<br>&nbsp;
<p><b><tt><font color="#993300">class eoMyClass</font></tt></b>
<br><b><tt><font color="#993300">{</font></tt></b>
<br><b><tt><font color="#993300">public:</font></tt></b>