Well, what do you know, major commit.
Changed the signature of eoMon, eoBin and eoQuadOp to return a bool, without invalidating fitness. Added a set of invalidators to take over that job (see for instance eoSGA and eoSGATransform how this can transparantly used) Derived eoState from eoFunctorStore (for convenience, from a design perspective this may sound wrong) Added a wrap_op function that does the wrapping for you (see eoOpContainer how this made this functor exceedingly less hairy). Checked all the tests removed the eoGeneric*Op family (not needed anymore) and of course changed all the operators to reflect the change (and found a few that didn't invalidate the fitness, thus really pointing out the advantage of the current approach)
This commit is contained in:
parent
17d55ae92b
commit
3a9b5a0e7e
30 changed files with 651 additions and 564 deletions
|
|
@ -80,22 +80,22 @@ public:
|
|||
|
||||
/// needed virtual dtor
|
||||
virtual ~eoEsMutate() {};
|
||||
|
||||
/** Inherited from eoObject
|
||||
|
||||
/** Inherited from eoObject
|
||||
@see eoObject
|
||||
*/
|
||||
virtual string className() const {return "eoESMutate";};
|
||||
|
||||
|
||||
/**
|
||||
Mutate eoEsSimple
|
||||
*/
|
||||
virtual void operator()( eoEsSimple<FitT>& _eo)
|
||||
virtual bool operator()( eoEsSimple<FitT>& _eo)
|
||||
{
|
||||
_eo.stdev *= exp(TauLcl * rng.normal());
|
||||
_eo.stdev *= exp(TauLcl * rng.normal());
|
||||
|
||||
if (_eo.stdev < stdev_eps)
|
||||
_eo.stdev = stdev_eps;
|
||||
|
||||
|
||||
// now apply to all
|
||||
|
||||
for (unsigned i = 0; i < _eo.size(); ++i)
|
||||
|
|
@ -104,40 +104,40 @@ public:
|
|||
}
|
||||
bounds.foldsInBounds(_eo);
|
||||
|
||||
_eo.invalidate();
|
||||
return true;
|
||||
}
|
||||
|
||||
|
||||
/// mutations - standard and correlated
|
||||
// =========
|
||||
// =========
|
||||
/*
|
||||
* Standard mutation of object variables and standard
|
||||
* deviations in ESs.
|
||||
* If there are fewer different standard deviations available
|
||||
* than the dimension of the objective function requires, the
|
||||
* Standard mutation of object variables and standard
|
||||
* deviations in ESs.
|
||||
* If there are fewer different standard deviations available
|
||||
* than the dimension of the objective function requires, the
|
||||
* last standard deviation is responsible for ALL remaining
|
||||
* object variables.
|
||||
* Schwefel 1977: Numerische Optimierung von Computer-Modellen
|
||||
* mittels der Evolutionsstrategie, pp. 165 ff.
|
||||
*/
|
||||
|
||||
virtual void operator()( eoEsStdev<FitT>& _eo )
|
||||
virtual bool operator()( eoEsStdev<FitT>& _eo )
|
||||
{
|
||||
double global = exp(TauGlb * rng.normal());
|
||||
for (unsigned i = 0; i < _eo.size(); i++)
|
||||
for (unsigned i = 0; i < _eo.size(); i++)
|
||||
{
|
||||
double stdev = _eo.stdevs[i];
|
||||
stdev *= global * exp(TauLcl * rng.normal());
|
||||
stdev *= global * exp(TauLcl * rng.normal());
|
||||
|
||||
if (stdev < stdev_eps)
|
||||
stdev = stdev_eps;
|
||||
|
||||
_eo.stdevs[i] = stdev;
|
||||
_eo.stdevs[i] = stdev;
|
||||
_eo[i] += stdev * rng.normal();
|
||||
}
|
||||
|
||||
bounds.foldsInBounds(_eo);
|
||||
|
||||
_eo.invalidate();
|
||||
return true;
|
||||
}
|
||||
|
||||
/*
|
||||
|
|
@ -148,43 +148,43 @@ public:
|
|||
* G. Rudolph: Globale Optimierung mit parallelen Evolutions-
|
||||
* strategien, Diploma Thesis, University of Dortmund, 1990
|
||||
*/
|
||||
|
||||
// Code from Thomas Baeck
|
||||
|
||||
virtual void operator()( eoEsFull<FitT> & _eo )
|
||||
|
||||
// Code from Thomas Baeck
|
||||
|
||||
virtual bool operator()( eoEsFull<FitT> & _eo )
|
||||
{
|
||||
|
||||
/*
|
||||
* First: mutate standard deviations (as above).
|
||||
*/
|
||||
|
||||
|
||||
double global = exp(TauGlb * rng.normal());
|
||||
unsigned i;
|
||||
for (i = 0; i < _eo.size(); i++)
|
||||
for (i = 0; i < _eo.size(); i++)
|
||||
{
|
||||
double stdev = _eo.stdevs[i];
|
||||
stdev *= global * exp(TauLcl * rng.normal());
|
||||
stdev *= global * exp(TauLcl * rng.normal());
|
||||
|
||||
if (stdev < stdev_eps)
|
||||
stdev = stdev_eps;
|
||||
|
||||
_eo.stdevs[i] = stdev;
|
||||
_eo.stdevs[i] = stdev;
|
||||
}
|
||||
|
||||
|
||||
|
||||
/*
|
||||
* Mutate rotation angles.
|
||||
*/
|
||||
|
||||
for (i = 0; i < _eo.correlations.size(); i++)
|
||||
|
||||
for (i = 0; i < _eo.correlations.size(); i++)
|
||||
{
|
||||
_eo.correlations[i] += TauBeta * rng.normal();
|
||||
if ( fabs(_eo.correlations[i]) > M_PI )
|
||||
_eo.correlations[i] += TauBeta * rng.normal();
|
||||
if ( fabs(_eo.correlations[i]) > M_PI )
|
||||
{
|
||||
_eo.correlations[i] -= M_PI * (int) (_eo.correlations[i]/M_PI) ;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/*
|
||||
* Perform correlated mutations.
|
||||
*/
|
||||
|
|
@ -192,17 +192,17 @@ public:
|
|||
double d1,d2, S, C;
|
||||
|
||||
vector<double> VarStp(_eo.size());
|
||||
for (i = 0; i < _eo.size(); i++)
|
||||
for (i = 0; i < _eo.size(); i++)
|
||||
VarStp[i] = _eo.stdevs[i] * rng.normal();
|
||||
|
||||
unsigned nq = _eo.correlations.size() - 1;
|
||||
|
||||
for (k = 0; k < _eo.size()-1; k++)
|
||||
for (k = 0; k < _eo.size()-1; k++)
|
||||
{
|
||||
n1 = _eo.size() - k - 1;
|
||||
n2 = _eo.size() - 1;
|
||||
|
||||
for (i = 0; i < k; i++)
|
||||
|
||||
for (i = 0; i < k; i++)
|
||||
{
|
||||
d1 = VarStp[n1];
|
||||
d2 = VarStp[n2];
|
||||
|
|
@ -214,13 +214,13 @@ public:
|
|||
nq--;
|
||||
}
|
||||
}
|
||||
|
||||
for (i = 0; i < _eo.size(); i++)
|
||||
|
||||
for (i = 0; i < _eo.size(); i++)
|
||||
_eo[i] += VarStp[i];
|
||||
|
||||
bounds.foldsInBounds(_eo);
|
||||
|
||||
_eo.invalidate();
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
private :
|
||||
|
|
@ -243,14 +243,14 @@ public:
|
|||
TauLcl /= sqrt( 2.0 * sqrt( (double)size ) );
|
||||
TauGlb /= sqrt( 2.0 * ( (double) size ) );
|
||||
}
|
||||
|
||||
|
||||
void init(eoEsFull<FitT>, eoEsMutationInit& _init)
|
||||
{
|
||||
init(eoEsStdev<FitT>(), _init);
|
||||
TauBeta = _init.TauBeta();
|
||||
}
|
||||
|
||||
// the data
|
||||
// the data
|
||||
//=========
|
||||
double TauLcl; /* Local factor for mutation of std deviations */
|
||||
double TauGlb; /* Global factor for mutation of std deviations */
|
||||
|
|
|
|||
|
|
@ -33,10 +33,10 @@
|
|||
/**
|
||||
\ingroup EvolutionStrategies
|
||||
|
||||
Crossover for Evolutionary strategie style representation,
|
||||
supporting co-evolving standard deviations.
|
||||
Crossover for Evolutionary strategie style representation,
|
||||
supporting co-evolving standard deviations.
|
||||
|
||||
Simply calls a crossover for the object variables,
|
||||
Simply calls a crossover for the object variables,
|
||||
and a crossover for teh StdDev
|
||||
*/
|
||||
|
||||
|
|
@ -44,26 +44,30 @@ template <class EOT>
|
|||
class eoEsStdevXOver : public eoQuadOp<EOT>
|
||||
{
|
||||
public :
|
||||
eoEsStdevXOver(eoGenericQuadOp<vector<double> > & _objectXOver,
|
||||
eoGenericQuadOp<vector<double> > & _stdDevXOver) :
|
||||
eoEsStdevXOver(eoQuadOp<vector<double> > & _objectXOver,
|
||||
eoQuadOp<vector<double> > & _stdDevXOver) :
|
||||
objectXOver(_objectXOver), stdDevXOver(_stdDevXOver) {}
|
||||
|
||||
std::string className(void) const { return "eoEsStdevXOver"; }
|
||||
|
||||
void operator()(EOT & _eo1, EOT & _eo2)
|
||||
bool operator()(EOT & _eo1, EOT & _eo2)
|
||||
{
|
||||
bool objectChanged = objectXOver(_eo1, _eo2); // as vector<double>
|
||||
bool stdDevChanged = stdDevXOver(_eo1.stdevs, _eo2.stdevs);
|
||||
|
||||
/// Marc, I didn't change it, but if only the stdev has changed,
|
||||
/// doesn't that mean that the fitness is stil valid. Maarten
|
||||
if ( objectChanged || stdDevChanged )
|
||||
{
|
||||
_eo1.invalidate();
|
||||
_eo2.invalidate();
|
||||
return true;
|
||||
}
|
||||
|
||||
return false;
|
||||
}
|
||||
|
||||
private:
|
||||
eoGenericQuadOp<vector<double> > & objectXOver;
|
||||
eoGenericQuadOp<vector<double> > & stdDevXOver;
|
||||
eoQuadOp<vector<double> > & objectXOver;
|
||||
eoQuadOp<vector<double> > & stdDevXOver;
|
||||
};
|
||||
|
||||
/* A question: it seems it really makes no difference to have
|
||||
|
|
|
|||
|
|
@ -31,27 +31,26 @@
|
|||
in eoRealOp.h.
|
||||
So they can be used when part of the genotype is a vector<double> ...
|
||||
In the long run, they should replace completely the operators from eoRealOp
|
||||
when all constructs using eoOp will be able to use the corresponding
|
||||
when all constructs using eoOp will be able to use the corresponding
|
||||
eoGenericOp - as it is already done in eoProportinoalCombinedOp
|
||||
MS January 25. 2001
|
||||
*/
|
||||
|
||||
#include <algorithm> // swap_ranges
|
||||
#include <utils/eoRNG.h>
|
||||
#include <eoGenericMonOp.h>
|
||||
#include <eoGenericQuadOp.h>
|
||||
#include <eoOp.h>
|
||||
#include <es/eoRealBounds.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
/** eoUniformMutation --> changes all values of the vector
|
||||
by uniform choice with range epsilon
|
||||
/** eoUniformMutation --> changes all values of the vector
|
||||
by uniform choice with range epsilon
|
||||
with probability p_change per variable
|
||||
\class eoUniformMutation eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
*/
|
||||
|
||||
template<class EOT> class eoGenericUniformMutation: public eoGenericMonOp<EOT>
|
||||
template<class EOT> class eoGenericUniformMutation: public eoMonOp<EOT>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
|
|
@ -61,8 +60,8 @@ template<class EOT> class eoGenericUniformMutation: public eoGenericMonOp<EOT>
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param _p_change the probability to change a given coordinate
|
||||
*/
|
||||
eoGenericUniformMutation(const double& _epsilon,
|
||||
const double& _p_change = 1.0):
|
||||
eoGenericUniformMutation(const double& _epsilon,
|
||||
const double& _p_change = 1.0):
|
||||
bounds(eoDummyVectorNoBounds), epsilon(_epsilon), p_change(_p_change) {}
|
||||
|
||||
/**
|
||||
|
|
@ -71,23 +70,23 @@ template<class EOT> class eoGenericUniformMutation: public eoGenericMonOp<EOT>
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param _p_change the probability to change a given coordinate
|
||||
*/
|
||||
eoGenericUniformMutation(eoRealVectorBounds & _bounds,
|
||||
const double& _epsilon, const double& _p_change = 1.0):
|
||||
eoGenericUniformMutation(eoRealVectorBounds & _bounds,
|
||||
const double& _epsilon, const double& _p_change = 1.0):
|
||||
bounds(_bounds), epsilon(_epsilon), p_change(_p_change) {}
|
||||
|
||||
/// The class name.
|
||||
string className() const { return "eoGenericUniformMutation"; }
|
||||
|
||||
|
||||
/**
|
||||
* Do it!
|
||||
* @param _eo The cromosome undergoing the mutation
|
||||
*/
|
||||
bool operator()(EOT& _eo)
|
||||
bool operator()(EOT& _eo)
|
||||
{
|
||||
bool hasChanged=false;
|
||||
for (unsigned lieu=0; lieu<_eo.size(); lieu++)
|
||||
for (unsigned lieu=0; lieu<_eo.size(); lieu++)
|
||||
{
|
||||
if (rng.flip(p_change))
|
||||
if (rng.flip(p_change))
|
||||
{
|
||||
// check the bounds
|
||||
double emin = _eo[lieu]-epsilon;
|
||||
|
|
@ -104,21 +103,21 @@ template<class EOT> class eoGenericUniformMutation: public eoGenericMonOp<EOT>
|
|||
return true;
|
||||
return false;
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
eoRealVectorBounds & bounds;
|
||||
double epsilon;
|
||||
double p_change;
|
||||
};
|
||||
|
||||
/** eoDetUniformMutation --> changes exactly k values of the vector
|
||||
by uniform choice with range epsilon
|
||||
/** eoDetUniformMutation --> changes exactly k values of the vector
|
||||
by uniform choice with range epsilon
|
||||
\class eoDetUniformMutation eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
*/
|
||||
|
||||
template<class EOT> class eoGenericDetUniformMutation:
|
||||
public eoGenericMonOp<EOT>
|
||||
template<class EOT> class eoGenericDetUniformMutation:
|
||||
public eoMonOp<EOT>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
|
|
@ -126,8 +125,8 @@ template<class EOT> class eoGenericDetUniformMutation:
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param number of coordinate to modify
|
||||
*/
|
||||
eoGenericDetUniformMutation(const double& _epsilon,
|
||||
const unsigned& _no = 1):
|
||||
eoGenericDetUniformMutation(const double& _epsilon,
|
||||
const unsigned& _no = 1):
|
||||
bounds(eoDummyVectorNoBounds), epsilon(_epsilon), no(_no) {}
|
||||
|
||||
/**
|
||||
|
|
@ -136,18 +135,18 @@ template<class EOT> class eoGenericDetUniformMutation:
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param number of coordinate to modify
|
||||
*/
|
||||
eoGenericDetUniformMutation(eoRealVectorBounds & _bounds,
|
||||
const double& _epsilon, const unsigned& _no = 1):
|
||||
eoGenericDetUniformMutation(eoRealVectorBounds & _bounds,
|
||||
const double& _epsilon, const unsigned& _no = 1):
|
||||
bounds(_bounds), epsilon(_epsilon), no(_no) {}
|
||||
|
||||
/// The class name.
|
||||
string className() const { return "eoGenericDetUniformMutation"; }
|
||||
|
||||
|
||||
/**
|
||||
* Do it!
|
||||
* @param _eo The cromosome undergoing the mutation
|
||||
*/
|
||||
bool operator()(EOT& _eo)
|
||||
bool operator()(EOT& _eo)
|
||||
{
|
||||
for (unsigned i=0; i<no; i++)
|
||||
{
|
||||
|
|
@ -175,37 +174,37 @@ private:
|
|||
|
||||
// two arithmetical crossovers
|
||||
|
||||
/** eoSegmentCrossover --> uniform choice in segment
|
||||
/** eoSegmentCrossover --> uniform choice in segment
|
||||
== arithmetical with same value along all coordinates
|
||||
\class eoSegmentCrossover eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
*/
|
||||
|
||||
template<class EOT> class eoGenericSegmentCrossover: public eoGenericQuadOp<EOT>
|
||||
template<class EOT> class eoGenericSegmentCrossover: public eoQuadOp<EOT>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
* (Default) Constructor.
|
||||
* The bounds are initialized with the global object that says: no bounds.
|
||||
*
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* as in BLX-alpha notation (Eshelman and Schaffer)
|
||||
* 0 == contractive application
|
||||
* Must be positive
|
||||
*/
|
||||
eoGenericSegmentCrossover(const double& _alpha = 0.0) :
|
||||
eoGenericSegmentCrossover(const double& _alpha = 0.0) :
|
||||
bounds(eoDummyVectorNoBounds), alpha(_alpha), range(1+2*_alpha) {}
|
||||
|
||||
/**
|
||||
* Constructor with bounds
|
||||
* @param _bounds an eoRealVectorBounds that contains the bounds
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* as in BLX-alpha notation (Eshelman and Schaffer)
|
||||
* 0 == contractive application
|
||||
* Must be positive
|
||||
*/
|
||||
eoGenericSegmentCrossover(eoRealVectorBounds & _bounds,
|
||||
const double& _alpha = 0.0) :
|
||||
eoGenericSegmentCrossover(eoRealVectorBounds & _bounds,
|
||||
const double& _alpha = 0.0) :
|
||||
bounds(_bounds), alpha(_alpha), range(1+2*_alpha) {}
|
||||
|
||||
/// The class name.
|
||||
|
|
@ -216,12 +215,12 @@ template<class EOT> class eoGenericSegmentCrossover: public eoGenericQuadOp<EOT>
|
|||
* @param _eo1 The first parent
|
||||
* @param _eo2 The first parent
|
||||
*/
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
{
|
||||
unsigned i;
|
||||
double r1, r2, fact;
|
||||
double alphaMin = -alpha;
|
||||
double alphaMax = 1+alpha;
|
||||
double alphaMax = 1+alpha;
|
||||
if ( (alpha == 0.0) || bounds.hasNoBoundAtAll() ) // no check to perform
|
||||
fact = -alpha + rng.uniform(range); // in [-alpha,1+alpha)
|
||||
else // look for the bounds for fact
|
||||
|
|
@ -238,7 +237,7 @@ template<class EOT> class eoGenericSegmentCrossover: public eoGenericQuadOp<EOT>
|
|||
{
|
||||
alphaMin = max(alphaMin, (bounds.minimum(i)-rmin)/length);
|
||||
alphaMin = max(alphaMin, (rmax-bounds.maximum(i))/length);
|
||||
}
|
||||
}
|
||||
if (bounds.isMaxBounded(i))
|
||||
{
|
||||
alphaMax = min(alphaMax, (bounds.maximum(i)-rmin)/length);
|
||||
|
|
@ -264,28 +263,28 @@ protected:
|
|||
double alpha;
|
||||
double range; // == 1+2*alpha
|
||||
};
|
||||
|
||||
/** eoArithmeticCrossover --> uniform choice in hypercube
|
||||
|
||||
/** eoArithmeticCrossover --> uniform choice in hypercube
|
||||
== arithmetical with different values for each coordinate
|
||||
\class eoArithmeticCrossover eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
*/
|
||||
|
||||
template<class EOT> class eoGenericArithmeticCrossover:
|
||||
public eoGenericQuadOp<EOT>
|
||||
template<class EOT> class eoGenericArithmeticCrossover:
|
||||
public eoQuadOp<EOT>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
* (Default) Constructor.
|
||||
* The bounds are initialized with the global object that says: no bounds.
|
||||
*
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* as in BLX-alpha notation (Eshelman and Schaffer)
|
||||
* 0 == contractive application
|
||||
* Must be positive
|
||||
*/
|
||||
eoGenericArithmeticCrossover(const double& _alpha = 0.0):
|
||||
bounds(eoDummyVectorNoBounds), alpha(_alpha), range(1+2*_alpha)
|
||||
eoGenericArithmeticCrossover(const double& _alpha = 0.0):
|
||||
bounds(eoDummyVectorNoBounds), alpha(_alpha), range(1+2*_alpha)
|
||||
{
|
||||
if (_alpha < 0)
|
||||
throw runtime_error("BLX coefficient should be positive");
|
||||
|
|
@ -294,14 +293,14 @@ template<class EOT> class eoGenericArithmeticCrossover:
|
|||
/**
|
||||
* Constructor with bounds
|
||||
* @param _bounds an eoRealVectorBounds that contains the bounds
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* as in BLX-alpha notation (Eshelman and Schaffer)
|
||||
* 0 == contractive application
|
||||
* Must be positive
|
||||
*/
|
||||
eoGenericArithmeticCrossover(eoRealVectorBounds & _bounds,
|
||||
const double& _alpha = 0.0):
|
||||
bounds(_bounds), alpha(_alpha), range(1+2*_alpha)
|
||||
eoGenericArithmeticCrossover(eoRealVectorBounds & _bounds,
|
||||
const double& _alpha = 0.0):
|
||||
bounds(_bounds), alpha(_alpha), range(1+2*_alpha)
|
||||
{
|
||||
if (_alpha < 0)
|
||||
throw runtime_error("BLX coefficient should be positive");
|
||||
|
|
@ -315,7 +314,7 @@ template<class EOT> class eoGenericArithmeticCrossover:
|
|||
* @param _eo1 The first parent
|
||||
* @param _eo2 The first parent
|
||||
*/
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
{
|
||||
unsigned i;
|
||||
double r1, r2, fact;
|
||||
|
|
@ -344,7 +343,7 @@ template<class EOT> class eoGenericArithmeticCrossover:
|
|||
{
|
||||
alphaMin = max(alphaMin, (bounds.minimum(i)-rmin)/length);
|
||||
alphaMin = max(alphaMin, (rmax-bounds.maximum(i))/length);
|
||||
}
|
||||
}
|
||||
if (bounds.isMaxBounded(i))
|
||||
{
|
||||
alphaMax = min(alphaMax, (bounds.maximum(i)-rmin)/length);
|
||||
|
|
@ -363,14 +362,14 @@ protected:
|
|||
double alpha;
|
||||
double range; // == 1+2*alphaMin
|
||||
};
|
||||
|
||||
|
||||
|
||||
/** eoRealUxOver --> Uniform crossover, also termed intermediate crossover
|
||||
\class eoRealUxOver eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
*/
|
||||
|
||||
template<class EOT> class eoGenericRealUxOver: public eoGenericQuadOp<EOT>
|
||||
template<class EOT> class eoGenericRealUxOver: public eoQuadOp<EOT>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
|
|
@ -378,7 +377,7 @@ template<class EOT> class eoGenericRealUxOver: public eoGenericQuadOp<EOT>
|
|||
* @param _preference bias in the choice (usually, no bias == 0.5)
|
||||
*/
|
||||
eoGenericRealUxOver(double _preference = 0.5): preference(_preference)
|
||||
{
|
||||
{
|
||||
if ( (_preference <= 0.0) || (_preference >= 1.0) )
|
||||
runtime_error("UxOver --> invalid preference");
|
||||
}
|
||||
|
|
@ -392,10 +391,10 @@ template<class EOT> class eoGenericRealUxOver: public eoGenericQuadOp<EOT>
|
|||
* @param _eo2 The second parent
|
||||
* @runtime_error if sizes don't match
|
||||
*/
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
{
|
||||
if ( _eo1.size() != _eo2.size())
|
||||
runtime_error("eoRealUxOver --> chromosomes sizes don't match" );
|
||||
if ( _eo1.size() != _eo2.size())
|
||||
runtime_error("eoRealUxOver --> chromosomes sizes don't match" );
|
||||
bool changed = false;
|
||||
for (unsigned int i=0; i<_eo1.size(); i++)
|
||||
{
|
||||
|
|
@ -415,7 +414,7 @@ template<class EOT> class eoGenericRealUxOver: public eoGenericQuadOp<EOT>
|
|||
private:
|
||||
double preference;
|
||||
};
|
||||
|
||||
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
//@}
|
||||
|
|
|
|||
|
|
@ -41,7 +41,7 @@
|
|||
* to enable dynamic mutations (see eoOenFithMutation below).
|
||||
*
|
||||
* As for the bounds, the values are here folded back into the bounds.
|
||||
* The other possiblity would be to iterate until we fall inside the bounds -
|
||||
* The other possiblity would be to iterate until we fall inside the bounds -
|
||||
* but this sometimes takes a long time!!!
|
||||
*/
|
||||
|
||||
|
|
@ -55,7 +55,7 @@ template<class EOT> class eoNormalMutation: public eoMonOp<EOT>
|
|||
* @param _sigma the range for uniform nutation
|
||||
* @param _p_change the probability to change a given coordinate
|
||||
*/
|
||||
eoNormalMutation(double & _sigma, const double& _p_change = 1.0):
|
||||
eoNormalMutation(double & _sigma, const double& _p_change = 1.0):
|
||||
sigma(_sigma), bounds(eoDummyVectorNoBounds), p_change(_p_change) {}
|
||||
|
||||
/**
|
||||
|
|
@ -64,33 +64,32 @@ template<class EOT> class eoNormalMutation: public eoMonOp<EOT>
|
|||
* @param _sigma the range for uniform nutation
|
||||
* @param _p_change the probability to change a given coordinate
|
||||
*/
|
||||
eoNormalMutation(eoRealVectorBounds & _bounds,
|
||||
double & _sigma, const double& _p_change = 1.0):
|
||||
eoNormalMutation(eoRealVectorBounds & _bounds,
|
||||
double & _sigma, const double& _p_change = 1.0):
|
||||
sigma(_sigma), bounds(_bounds), p_change(_p_change) {}
|
||||
|
||||
/// The class name.
|
||||
string className() const { return "eoNormalMutation"; }
|
||||
|
||||
|
||||
/**
|
||||
* Do it!
|
||||
* @param _eo The cromosome undergoing the mutation
|
||||
*/
|
||||
void operator()(EOT& _eo)
|
||||
bool operator()(EOT& _eo)
|
||||
{
|
||||
bool hasChanged=false;
|
||||
for (unsigned lieu=0; lieu<_eo.size(); lieu++)
|
||||
for (unsigned lieu=0; lieu<_eo.size(); lieu++)
|
||||
{
|
||||
if (rng.flip(p_change))
|
||||
if (rng.flip(p_change))
|
||||
{
|
||||
_eo[lieu] += sigma*rng.normal();
|
||||
bounds.foldsInBounds(lieu, _eo[lieu]);
|
||||
hasChanged = true;
|
||||
}
|
||||
}
|
||||
if (hasChanged)
|
||||
_eo.invalidate();
|
||||
return hasChanged;
|
||||
}
|
||||
|
||||
|
||||
protected:
|
||||
double & sigma;
|
||||
private:
|
||||
|
|
@ -98,9 +97,9 @@ private:
|
|||
double p_change;
|
||||
};
|
||||
|
||||
/** the dynamic version: just say it is updatable -
|
||||
/** the dynamic version: just say it is updatable -
|
||||
* and write the update() method!
|
||||
* here the 1 fifth rule: count the proportion of successful mutations, and
|
||||
* here the 1 fifth rule: count the proportion of successful mutations, and
|
||||
* increase sigma if more than threshold (1/5 !)
|
||||
*/
|
||||
|
||||
|
|
|
|||
|
|
@ -35,8 +35,8 @@
|
|||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
/** eoUniformMutation --> changes all values of the vector
|
||||
by uniform choice with range epsilon
|
||||
/** eoUniformMutation --> changes all values of the vector
|
||||
by uniform choice with range epsilon
|
||||
with probability p_change per variable
|
||||
\class eoUniformMutation eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
|
|
@ -52,7 +52,7 @@ template<class EOT> class eoUniformMutation: public eoMonOp<EOT>
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param _p_change the probability to change a given coordinate
|
||||
*/
|
||||
eoUniformMutation(const double& _epsilon, const double& _p_change = 1.0):
|
||||
eoUniformMutation(const double& _epsilon, const double& _p_change = 1.0):
|
||||
bounds(eoDummyVectorNoBounds), epsilon(_epsilon), p_change(_p_change) {}
|
||||
|
||||
/**
|
||||
|
|
@ -61,23 +61,23 @@ template<class EOT> class eoUniformMutation: public eoMonOp<EOT>
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param _p_change the probability to change a given coordinate
|
||||
*/
|
||||
eoUniformMutation(eoRealVectorBounds & _bounds,
|
||||
const double& _epsilon, const double& _p_change = 1.0):
|
||||
eoUniformMutation(eoRealVectorBounds & _bounds,
|
||||
const double& _epsilon, const double& _p_change = 1.0):
|
||||
bounds(_bounds), epsilon(_epsilon), p_change(_p_change) {}
|
||||
|
||||
/// The class name.
|
||||
string className() const { return "eoUniformMutation"; }
|
||||
|
||||
|
||||
/**
|
||||
* Do it!
|
||||
* @param _eo The cromosome undergoing the mutation
|
||||
*/
|
||||
void operator()(EOT& _eo)
|
||||
bool operator()(EOT& _eo)
|
||||
{
|
||||
bool hasChanged=false;
|
||||
for (unsigned lieu=0; lieu<_eo.size(); lieu++)
|
||||
for (unsigned lieu=0; lieu<_eo.size(); lieu++)
|
||||
{
|
||||
if (rng.flip(p_change))
|
||||
if (rng.flip(p_change))
|
||||
{
|
||||
// check the bounds
|
||||
double emin = _eo[lieu]-epsilon;
|
||||
|
|
@ -90,18 +90,17 @@ template<class EOT> class eoUniformMutation: public eoMonOp<EOT>
|
|||
hasChanged = true;
|
||||
}
|
||||
}
|
||||
if (hasChanged)
|
||||
_eo.invalidate();
|
||||
return hasChanged;
|
||||
}
|
||||
|
||||
|
||||
private:
|
||||
eoRealVectorBounds & bounds;
|
||||
double epsilon;
|
||||
double p_change;
|
||||
};
|
||||
|
||||
/** eoDetUniformMutation --> changes exactly k values of the vector
|
||||
by uniform choice with range epsilon
|
||||
/** eoDetUniformMutation --> changes exactly k values of the vector
|
||||
by uniform choice with range epsilon
|
||||
\class eoDetUniformMutation eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
*/
|
||||
|
|
@ -114,7 +113,7 @@ template<class EOT> class eoDetUniformMutation: public eoMonOp<EOT>
|
|||
* @param _epsilon the range for uniform nutation
|
||||
* @param number of coordinate to modify
|
||||
*/
|
||||
eoDetUniformMutation(const double& _epsilon, const unsigned& _no = 1):
|
||||
eoDetUniformMutation(const double& _epsilon, const unsigned& _no = 1):
|
||||
bounds(eoDummyVectorNoBounds), epsilon(_epsilon), no(_no) {}
|
||||
|
||||
/**
|
||||
|
|
@ -134,12 +133,11 @@ template<class EOT> class eoDetUniformMutation: public eoMonOp<EOT>
|
|||
* Do it!
|
||||
* @param _eo The cromosome undergoing the mutation
|
||||
*/
|
||||
void operator()(EOT& _eo)
|
||||
bool operator()(EOT& _eo)
|
||||
{
|
||||
_eo.invalidate();
|
||||
for (unsigned i=0; i<no; i++)
|
||||
{
|
||||
unsigned lieu = rng.random(_eo.size());
|
||||
{
|
||||
unsigned lieu = rng.random(_eo.size());
|
||||
// actually, we should test that we don't re-modify same variable!
|
||||
|
||||
// check the bounds
|
||||
|
|
@ -150,7 +148,9 @@ template<class EOT> class eoDetUniformMutation: public eoMonOp<EOT>
|
|||
if (bounds.isMaxBounded(lieu))
|
||||
emax = min(bounds.maximum(lieu), emax);
|
||||
_eo[lieu] = emin + (emax-emin)*rng.uniform();
|
||||
}
|
||||
}
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
private:
|
||||
|
|
@ -162,7 +162,7 @@ private:
|
|||
|
||||
// two arithmetical crossovers
|
||||
|
||||
/** eoSegmentCrossover --> uniform choice in segment
|
||||
/** eoSegmentCrossover --> uniform choice in segment
|
||||
== arithmetical with same value along all coordinates
|
||||
\class eoSegmentCrossover eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
|
|
@ -175,12 +175,12 @@ template<class EOT> class eoSegmentCrossover: public eoQuadOp<EOT>
|
|||
* (Default) Constructor.
|
||||
* The bounds are initialized with the global object that says: no bounds.
|
||||
*
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* as in BLX-alpha notation (Eshelman and Schaffer)
|
||||
* 0 == contractive application
|
||||
* Must be positive
|
||||
*/
|
||||
eoSegmentCrossover(const double& _alpha = 0.0) :
|
||||
eoSegmentCrossover(const double& _alpha = 0.0) :
|
||||
bounds(eoDummyVectorNoBounds), alpha(_alpha), range(1+2*_alpha) {}
|
||||
|
||||
/**
|
||||
|
|
@ -203,12 +203,12 @@ template<class EOT> class eoSegmentCrossover: public eoQuadOp<EOT>
|
|||
* @param _eo1 The first parent
|
||||
* @param _eo2 The first parent
|
||||
*/
|
||||
void operator()(EOT& _eo1, EOT& _eo2)
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
{
|
||||
unsigned i;
|
||||
double r1, r2, fact;
|
||||
double alphaMin = -alpha;
|
||||
double alphaMax = 1+alpha;
|
||||
double alphaMax = 1+alpha;
|
||||
if (alpha == 0.0) // no check to perform
|
||||
fact = -alpha + rng.uniform(range); // in [-alpha,1+alpha)
|
||||
else // look for the bounds for fact
|
||||
|
|
@ -225,7 +225,7 @@ template<class EOT> class eoSegmentCrossover: public eoQuadOp<EOT>
|
|||
{
|
||||
alphaMin = max(alphaMin, (bounds.minimum(i)-rmin)/length);
|
||||
alphaMin = max(alphaMin, (rmax-bounds.maximum(i))/length);
|
||||
}
|
||||
}
|
||||
if (bounds.isMaxBounded(i))
|
||||
{
|
||||
alphaMax = min(alphaMax, (bounds.maximum(i)-rmin)/length);
|
||||
|
|
@ -243,8 +243,7 @@ template<class EOT> class eoSegmentCrossover: public eoQuadOp<EOT>
|
|||
_eo1[i] = fact * r1 + (1-fact) * r2;
|
||||
_eo2[i] = (1-fact) * r1 + fact * r2;
|
||||
}
|
||||
_eo1.invalidate(); // shoudl test if fact was 0 or 1 :-)))
|
||||
_eo2.invalidate();
|
||||
return true; // shoudl test if fact was 0 or 1 :-)))
|
||||
}
|
||||
|
||||
protected:
|
||||
|
|
@ -252,8 +251,8 @@ protected:
|
|||
double alpha;
|
||||
double range; // == 1+2*alpha
|
||||
};
|
||||
|
||||
/** eoArithmeticCrossover --> uniform choice in hypercube
|
||||
|
||||
/** eoArithmeticCrossover --> uniform choice in hypercube
|
||||
== arithmetical with different values for each coordinate
|
||||
\class eoArithmeticCrossover eoRealOp.h Tutorial/eoRealOp.h
|
||||
\ingroup parameteric
|
||||
|
|
@ -266,13 +265,13 @@ template<class EOT> class eoArithmeticCrossover: public eoQuadOp<EOT>
|
|||
* (Default) Constructor.
|
||||
* The bounds are initialized with the global object that says: no bounds.
|
||||
*
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* @param _alphaMin the amount of exploration OUTSIDE the parents
|
||||
* as in BLX-alpha notation (Eshelman and Schaffer)
|
||||
* 0 == contractive application
|
||||
* Must be positive
|
||||
*/
|
||||
eoArithmeticCrossover(const double& _alpha = 0.0):
|
||||
bounds(eoDummyVectorNoBounds), alpha(_alpha), range(1+2*_alpha)
|
||||
eoArithmeticCrossover(const double& _alpha = 0.0):
|
||||
bounds(eoDummyVectorNoBounds), alpha(_alpha), range(1+2*_alpha)
|
||||
{
|
||||
if (_alpha < 0)
|
||||
throw runtime_error("BLX coefficient should be positive");
|
||||
|
|
@ -302,7 +301,7 @@ template<class EOT> class eoArithmeticCrossover: public eoQuadOp<EOT>
|
|||
* @param _eo1 The first parent
|
||||
* @param _eo2 The first parent
|
||||
*/
|
||||
void operator()(EOT& _eo1, EOT& _eo2)
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
{
|
||||
unsigned i;
|
||||
double r1, r2, fact;
|
||||
|
|
@ -331,7 +330,7 @@ template<class EOT> class eoArithmeticCrossover: public eoQuadOp<EOT>
|
|||
{
|
||||
alphaMin = max(alphaMin, (bounds.minimum(i)-rmin)/length);
|
||||
alphaMin = max(alphaMin, (rmax-bounds.maximum(i))/length);
|
||||
}
|
||||
}
|
||||
if (bounds.isMaxBounded(i))
|
||||
{
|
||||
alphaMax = min(alphaMax, (bounds.maximum(i)-rmin)/length);
|
||||
|
|
@ -342,16 +341,16 @@ template<class EOT> class eoArithmeticCrossover: public eoQuadOp<EOT>
|
|||
_eo2[i] = (1-fact) * rmin + fact * rmax;
|
||||
}
|
||||
}
|
||||
_eo1.invalidate();
|
||||
_eo2.invalidate();
|
||||
}
|
||||
|
||||
return true;
|
||||
}
|
||||
|
||||
protected:
|
||||
eoRealVectorBounds & bounds;
|
||||
double alpha;
|
||||
double range; // == 1+2*alphaMin
|
||||
};
|
||||
|
||||
|
||||
|
||||
/** eoRealUxOver --> Uniform crossover, also termed intermediate crossover
|
||||
\class eoRealUxOver eoRealOp.h Tutorial/eoRealOp.h
|
||||
|
|
@ -380,10 +379,10 @@ template<class EOT> class eoRealUxOver: public eoQuadOp<EOT>
|
|||
* @param _eo2 The second parent
|
||||
* @runtime_error if sizes don't match
|
||||
*/
|
||||
void operator()(EOT& _eo1, EOT& _eo2)
|
||||
bool operator()(EOT& _eo1, EOT& _eo2)
|
||||
{
|
||||
if ( _eo1.size() != _eo2.size())
|
||||
runtime_error("UxOver --> chromosomes sizes don't match" );
|
||||
if ( _eo1.size() != _eo2.size())
|
||||
runtime_error("UxOver --> chromosomes sizes don't match" );
|
||||
bool changed = false;
|
||||
for (unsigned int i=0; i<_eo1.size(); i++)
|
||||
{
|
||||
|
|
@ -396,11 +395,7 @@ template<class EOT> class eoRealUxOver: public eoQuadOp<EOT>
|
|||
changed = true;
|
||||
}
|
||||
}
|
||||
if (changed)
|
||||
{
|
||||
_eo1.invalidate();
|
||||
_eo2.invalidate();
|
||||
}
|
||||
return changed;
|
||||
}
|
||||
private:
|
||||
float preference;
|
||||
|
|
|
|||
Reference in a new issue