* EO.tpl, MyStructEA.cpp, MyStructSEA.cpp, make_MyStruct.cpp: Use
correct names for includes. * README.manual: This is a copy of the old README. * README: Describe the new way and setup of creating a new EO project. * createEOproject.sh, Makefile.am.src-tmpl, Makefile.am.top-tmpl: * configure.ac.tmpl: New files to create a standalone EO project from templates.
This commit is contained in:
kuepper
parent
b28f39af40
commit
301e29ac02
12 changed files with 445 additions and 265 deletions
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@ -3,20 +3,20 @@
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// (The above line is useful in Emacs-like editors)
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//
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//*************************************
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//
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//
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// EASEA.cpp
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//
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//
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// C++ file generated by AESAE-EO v0.7
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//
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//
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//*************************************
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//
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//
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// Main file for creating a new representation in EO
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// =================================================
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//
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//
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// This main file includes all other files that have been generated by the
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// script create.sh, so it is the only file to compile.
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//
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//
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// In case you want to build up a separate library for your new Evolving Object,
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// you'll need some work - follow what's done in the src/ga dir, used in the
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// main file BitEA in tutorial/Lesson4 dir.
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@ -49,12 +49,12 @@ inline float random(float b1=0, float b2=1){
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\ANALYSE_PARAMETERS
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\INSERT_USER_DECLARATIONS
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\INSERT_INITIALISATION_FUNCTION
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\INSERT_INITIALISATION_FUNCTION
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// include here whatever specific files for your representation
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// Basically, this should include at least the following
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/** definition of representation:
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/** definition of representation:
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* class EASEAGenome MUST derive from EO<FitT> for some fitness
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*/
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#include "EASEAGenome.h"
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@ -64,23 +64,23 @@ inline float random(float b1=0, float b2=1){
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//*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
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// START fitness type: double or eoMaximizingFitness if you are maximizing
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// eoMinimizingFitness if you are minimizing
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typedef \MINIMAXI MyFitT ; // type of fitness
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typedef \MINIMAXI MyFitT ; // type of fitness
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// END fitness type
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//*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
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// Then define your EO objects using that fitness type
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typedef EASEAGenome<MyFitT> Indi; // ***MUST*** derive from EO
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typedef EASEAGenome<MyFitT> Indi; // ***MUST*** derive from EO
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\INSERT_USER_FUNCTIONS
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/** definition of evaluation:
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/** definition of evaluation:
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* class EASEAEvalFunc MUST derive from eoEvalFunc<EASEAGenome>
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* and should test for validity before doing any computation
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* see tutorial/Templates/evalFunc.tmpl
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*/
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#include "EASEAEvalFunc.h"
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/** definition of initialization:
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/** definition of initialization:
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* class EASEAGenomeInit MUST derive from eoInit<EASEAGenome>
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*/
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#include "EASEAInit.h"
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@ -93,34 +93,34 @@ typedef EASEAGenome<MyFitT> Indi; // ***MUST*** derive from EO
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// Use existing modules to define representation independent routines
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// These are parser-based definitions of objects
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// how to initialize the population
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// how to initialize the population
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// it IS representation independent if an eoInit is given
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#include <do/make_pop.h>
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#include <make_pop.h>
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eoPop<Indi >& make_pop(eoParser& _parser, eoState& _state, eoInit<Indi> & _init){
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return do_make_pop(_parser, _state, _init);
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}
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// the stopping criterion
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#include "do/make_continue.h"
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#include "make_continue.h"
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eoContinue<Indi>& make_continue(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi> & _eval){
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return do_make_continue(_parser, _state, _eval);
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}
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// outputs (stats, population dumps, ...)
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#include <do/make_checkpoint.h>
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#include <make_checkpoint.h>
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eoCheckPoint<Indi>& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi>& _eval, eoContinue<Indi>& _continue) {
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return do_make_checkpoint(_parser, _state, _eval, _continue);
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}
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// evolution engine (selection and replacement)
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#include <do/make_algo_easea.h>
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#include <make_algo_easea.h>
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eoAlgo<Indi>& make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<Indi>& _eval, eoContinue<Indi>& _continue, eoGenOp<Indi>& _op){
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return do_make_algo_scalar(_parser, _state, _eval, _continue, _op);
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}
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// simple call to the algo. stays there for consistency reasons
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// simple call to the algo. stays there for consistency reasons
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// no template for that one
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#include <do/make_run.h>
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#include <make_run.h>
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// the instanciating fitnesses
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#include <eoScalarFitness.h>
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void run_ea(eoAlgo<Indi>& _ga, eoPop<Indi>& _pop){
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@ -149,12 +149,12 @@ try {
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// a genotype initializer
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EASEAInit<Indi> init;
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// or, if you need some parameters, you might as well
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// or, if you need some parameters, you might as well
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// - write a constructor of the eoMyStructInit that uses a parser
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// - call it from here:
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// eoEASEAInit<Indi> init(parser);
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// Build the variation operator (any seq/prop construct)
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// here, a simple example with only 1 crossover (2->2, a QuadOp) and
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// one mutation, is given.
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@ -162,7 +162,7 @@ try {
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// A (first) crossover (possibly use the parser in its Ctor)
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EASEAQuadCrossover<Indi> cross /* (eoParser parser) */;
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// IF MORE THAN ONE:
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// read its relative rate in the combination
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@ -176,9 +176,9 @@ try {
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// 2- include that file here together with eoEASEAQuadCrossover above
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// 3- uncomment and duplicate the following lines:
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//
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// eoEASEASecondCrossover<Indi> cross2(eoParser parser);
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// double cross2Rate = parser.createParam(1.0, "cross2Rate", "Relative rate for crossover 2", '2', "Variation Operators").value();
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// cross.add(cross2, cross2Rate);
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// eoEASEASecondCrossover<Indi> cross2(eoParser parser);
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// double cross2Rate = parser.createParam(1.0, "cross2Rate", "Relative rate for crossover 2", '2', "Variation Operators").value();
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// cross.add(cross2, cross2Rate);
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// NOTE: if you want some gentle output, the last one shoudl be like
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// cross.add(cross, crossXXXRate, true);
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@ -201,9 +201,9 @@ try {
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// 2- include that file here together with eoEASEAMutation above
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// 3- uncomment and duplicate the following lines:
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//
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// eoEASEASecondMutation<Indi> mut2(eoParser parser);
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// double mut2Rate = parser.createParam(1.0, "mut2Rate", "Relative rate for mutation 2", '2', "Variation Operators").value();
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// mut.add(mut2, mut2Rate);
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// eoEASEASecondMutation<Indi> mut2(eoParser parser);
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// double mut2Rate = parser.createParam(1.0, "mut2Rate", "Relative rate for mutation 2", '2', "Variation Operators").value();
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// mut.add(mut2, mut2Rate);
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// NOTE: if you want some gentle output, the last one shoudl be like
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// mut.add(mut, mutXXXRate, true);
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@ -227,7 +227,7 @@ try {
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//// Now the representation-independent things
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//// Now the representation-independent things
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//
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// YOU SHOULD NOT NEED TO MODIFY ANYTHING BEYOND THIS POINT
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// unless you want to add specific statistics to the checkpoint
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@ -279,18 +279,18 @@ try {
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// (The above line is useful in Emacs-like editors)
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//
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//*************************************
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//
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//
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// EASEAGenome.h
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//
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//
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// C++ file generated by AESAE-EO v0.7
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//
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//
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//*************************************
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//
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#ifndef _EASEAGenome_h
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#define _EASEAGenome_h
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/**
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/**
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* Always write a comment in this format before class definition
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* if you want the class to be documented by Doxygen
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@ -299,7 +299,7 @@ try {
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* like eoVector for instance, if you handle a vector of something....
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* If you create a structure from scratch,
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* the only thing you need to provide are
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* the only thing you need to provide are
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* a default constructor
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* IO routines printOn and readFrom
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*
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@ -313,41 +313,41 @@ template< class FitT>
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class EASEAGenome: public EO<FitT> {
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public:
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/** Ctor: you MUST provide a default ctor.
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* though such individuals will generally be processed
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* though such individuals will generally be processed
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* by some eoInit object
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*/
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EASEAGenome() : EO<FitT>()
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{
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{
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// START Code of default Ctor of an EASEAGenome object
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\GENOME_CTOR
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\GENOME_CTOR
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// END Code of default Ctor of an EASEAGenome object
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}
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EASEAGenome(const EASEAGenome & arg) : EO<FitT>()
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{
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{
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\GENOME_CTOR
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copy(arg);
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copy(arg);
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}
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virtual ~EASEAGenome()
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{
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// START Code of Destructor of an EASEAGenome object
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\GENOME_DTOR
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\GENOME_DTOR
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// END Code of Destructor of an EASEAGenome object
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}
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virtual string className() const { return "EASEAGenome"; }
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EASEAGenome& operator=(const EASEAGenome & arg) {
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copy(arg);
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EASEAGenome& operator=(const EASEAGenome & arg) {
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copy(arg);
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return *this;
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}
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void copy(const EASEAGenome& genome)
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void copy(const EASEAGenome& genome)
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{
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if(&genome != this){
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\GENOME_DTOR
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\COPY_CTOR
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\COPY_CTOR
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if (genome.invalid()) { // copying an invalid genome
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fitness(FitT()); // put a valid value (i.e. non NAN)
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invalidate(); // but INVALIDATE the genome
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@ -356,8 +356,8 @@ public:
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fitness(genome.fitness());
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}
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}
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bool operator==(const EASEAGenome & genome) const {
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bool operator==(const EASEAGenome & genome) const {
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\EQUAL
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return true;
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}
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@ -372,7 +372,7 @@ public:
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// First write the fitness
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EO<FitT>::printOn(os);
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os << ' ';
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// START Code of default output
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// START Code of default output
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/** HINTS
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* in EO we systematically write the sizes of things before the things
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@ -383,7 +383,7 @@ public:
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// END Code of default output
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}
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/** reading...
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/** reading...
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* of course, your readFrom must be able to read what printOn writes!!!
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*/
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void readFrom(istream& is)
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@ -412,11 +412,11 @@ public:
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// (The above line is useful in Emacs-like editors)
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//
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//*************************************
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//
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//
|
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// EASEAEvalFunc.h
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//
|
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//
|
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// C++ file generated by AESAE-EO v0.7
|
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//
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||||
//
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||||
//*************************************
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//
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||||
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@ -424,7 +424,7 @@ public:
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Evaluator in EO: a functor that computes the fitness of an EO
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=============================================================
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*/
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#ifndef _EASEAEvalFunc_h
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#define _EASEAEvalFunc_h
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@ -435,7 +435,7 @@ Evaluator in EO: a functor that computes the fitness of an EO
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// include the base definition of eoEvalFunc
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#include "eoEvalFunc.h"
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|
||||
/**
|
||||
/**
|
||||
Always write a comment in this format before class definition
|
||||
if you want the class to be documented by Doxygen
|
||||
*/
|
||||
|
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@ -446,7 +446,7 @@ public:
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/// Ctor - no requirement
|
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// START eventually add or modify the anyVariable argument
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EASEAEvalFunc()
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// EASEAEvalFunc( varType _anyVariable) : anyVariable(_anyVariable)
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// EASEAEvalFunc( varType _anyVariable) : anyVariable(_anyVariable)
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// END eventually add or modify the anyVariable argument
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{
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// START Code of Ctor of an EASEAEvalFunc object
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@ -456,7 +456,7 @@ public:
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/** Actually compute the fitness
|
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*
|
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* @param EOT & _eo the EO object to evaluate
|
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* it should stay templatized to be usable
|
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* it should stay templatized to be usable
|
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* with any fitness type
|
||||
*/
|
||||
void operator()(EOT & genome)
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@ -484,11 +484,11 @@ private:
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// (The above line is useful in Emacs-like editors)
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//
|
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//*************************************
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//
|
||||
//
|
||||
// EASEAInit.h
|
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//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
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@ -503,12 +503,12 @@ objects initialization in EO
|
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// include the base definition of eoInit
|
||||
#include <eoInit.h>
|
||||
|
||||
/**
|
||||
/**
|
||||
* Always write a comment in this format before class definition
|
||||
* if you want the class to be documented by Doxygen
|
||||
*
|
||||
* There is NO ASSUMPTION on the class GenoypeT.
|
||||
* In particular, it does not need to derive from EO (e.g. to initialize
|
||||
* In particular, it does not need to derive from EO (e.g. to initialize
|
||||
* atoms of an eoVector you will need an eoInit<AtomType>)
|
||||
*/
|
||||
template <class GenotypeT>
|
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|
|
@ -517,7 +517,7 @@ public:
|
|||
/// Ctor - no requirement
|
||||
// START eventually add or modify the anyVariable argument
|
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EASEAInit()
|
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// EASEAInit( varType & _anyVariable) : anyVariable(_anyVariable)
|
||||
// EASEAInit( varType & _anyVariable) : anyVariable(_anyVariable)
|
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// END eventually add or modify the anyVariable argument
|
||||
{
|
||||
// START Code of Ctor of an EASEAInit object
|
||||
|
|
@ -552,11 +552,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEAMutation.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -571,14 +571,14 @@ simple mutation operators
|
|||
|
||||
#include <eoOp.h>
|
||||
|
||||
/**
|
||||
/**
|
||||
* Always write a comment in this format before class definition
|
||||
* if you want the class to be documented by Doxygen
|
||||
*
|
||||
* THere is NO ASSUMPTION on the class GenoypeT.
|
||||
* In particular, it does not need to derive from EO
|
||||
*/
|
||||
template<class GenotypeT>
|
||||
template<class GenotypeT>
|
||||
class EASEAMutation: public eoMonOp<GenotypeT>
|
||||
{
|
||||
public:
|
||||
|
|
@ -587,7 +587,7 @@ public:
|
|||
*/
|
||||
// START eventually add or modify the anyVariable argument
|
||||
EASEAMutation()
|
||||
// EASEAMutation( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// EASEAMutation( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// END eventually add or modify the anyVariable argument
|
||||
{
|
||||
// START Code of Ctor of an EASEAMutation object
|
||||
|
|
@ -601,7 +601,7 @@ public:
|
|||
* modifies the parent
|
||||
* @param _genotype The parent genotype (will be modified)
|
||||
*/
|
||||
bool operator()(GenotypeT & _genotype)
|
||||
bool operator()(GenotypeT & _genotype)
|
||||
{
|
||||
// START code for mutation of the _genotype object
|
||||
\INSERT_MUTATOR
|
||||
|
|
@ -620,11 +620,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEAQuadCrossover.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -640,14 +640,14 @@ Quadratic crossover operators modify both genotypes
|
|||
|
||||
#include <eoOp.h>
|
||||
|
||||
/**
|
||||
/**
|
||||
* Always write a comment in this format before class definition
|
||||
* if you want the class to be documented by Doxygen
|
||||
*
|
||||
* THere is NO ASSUMPTION on the class GenoypeT.
|
||||
* In particular, it does not need to derive from EO
|
||||
*/
|
||||
template<class GenotypeT>
|
||||
template<class GenotypeT>
|
||||
class EASEAQuadCrossover: public eoQuadOp<GenotypeT>
|
||||
{
|
||||
public:
|
||||
|
|
@ -656,7 +656,7 @@ public:
|
|||
*/
|
||||
// START eventually add or modify the anyVariable argument
|
||||
EASEAQuadCrossover()
|
||||
// EASEAQuadCrossover( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// EASEAQuadCrossover( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// END eventually add or modify the anyVariable argument
|
||||
{
|
||||
// START Code of Ctor of an EASEAQuadCrossover object
|
||||
|
|
@ -669,11 +669,11 @@ public:
|
|||
/**
|
||||
* eoQuad crossover - modifies both genotypes
|
||||
*/
|
||||
bool operator()(GenotypeT& child1, GenotypeT & child2)
|
||||
bool operator()(GenotypeT& child1, GenotypeT & child2)
|
||||
{
|
||||
GenotypeT parent1(child1);
|
||||
GenotypeT parent2(child2);
|
||||
|
||||
|
||||
// START code for crossover of child1 and child2 objects
|
||||
\INSERT_CROSSOVER
|
||||
return (parent1!=child1)||(parent2!=child2);
|
||||
|
|
@ -693,11 +693,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEA_make_continue.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -838,11 +838,11 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
|
|||
#endif
|
||||
|
||||
\START_EO_PARAM_TPL#*************************************
|
||||
#
|
||||
#
|
||||
# EASEA.prm
|
||||
#
|
||||
#
|
||||
# Parameter file generated by AESAE-EO v0.7
|
||||
#
|
||||
#
|
||||
#*************************************
|
||||
###### General ######
|
||||
# --help=0 # -h : Prints this message
|
||||
|
|
@ -901,11 +901,11 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
|
|||
--pMut=\MUT_PROB # -M : Probability of Mutation
|
||||
|
||||
\START_EO_MAKEFILE_TPL#*************************************
|
||||
#
|
||||
#
|
||||
# EASEA.mak
|
||||
#
|
||||
#
|
||||
# Makefile generated by AESAE-EO v0.7
|
||||
#
|
||||
#
|
||||
#*************************************
|
||||
|
||||
# sample makefile for building an EA evolving a new genotype
|
||||
|
|
@ -929,7 +929,7 @@ SOURCES = EASEA.cpp \
|
|||
ALL = EASEA
|
||||
|
||||
EASEA : $(SOURCES)
|
||||
c++ -g -I. -I$(DIR_EO)/src -o $@ EASEA.cpp $(LIB_EO) -lm
|
||||
c++ -g -I. -I$(DIR_EO)/src -o $@ EASEA.cpp $(LIB_EO) -lm
|
||||
|
||||
all : $(ALL)
|
||||
|
||||
|
|
|
|||
Reference in a new issue