* EO.tpl, MyStructEA.cpp, MyStructSEA.cpp, make_MyStruct.cpp: Use
correct names for includes. * README.manual: This is a copy of the old README. * README: Describe the new way and setup of creating a new EO project. * createEOproject.sh, Makefile.am.src-tmpl, Makefile.am.top-tmpl: * configure.ac.tmpl: New files to create a standalone EO project from templates.
This commit is contained in:
kuepper
parent
b28f39af40
commit
301e29ac02
12 changed files with 445 additions and 265 deletions
19
eo/tutorial/Templates/ChangeLog
Normal file
19
eo/tutorial/Templates/ChangeLog
Normal file
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@ -0,0 +1,19 @@
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2006-12-16 Jochen Küpper <jochen@fhi-berlin.mpg.de>
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* EO.tpl, MyStructEA.cpp, MyStructSEA.cpp, make_MyStruct.cpp: Use
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correct names for includes.
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* README.manual: This is a copy of the old README.
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* README: Describe the new way and setup of creating a new EO project.
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* createEOproject.sh, Makefile.am.src-tmpl, Makefile.am.top-tmpl:
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* configure.ac.tmpl: New files to create a standalone EO project from
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templates.
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* Local Variables:
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* coding: iso-8859-1
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* mode: flyspell
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* fill-column: 80
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* End:
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@ -3,20 +3,20 @@
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// (The above line is useful in Emacs-like editors)
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//
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//*************************************
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//
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//
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// EASEA.cpp
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//
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//
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// C++ file generated by AESAE-EO v0.7
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//
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//
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//*************************************
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//
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//
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// Main file for creating a new representation in EO
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// =================================================
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//
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//
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// This main file includes all other files that have been generated by the
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// script create.sh, so it is the only file to compile.
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//
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//
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// In case you want to build up a separate library for your new Evolving Object,
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// you'll need some work - follow what's done in the src/ga dir, used in the
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// main file BitEA in tutorial/Lesson4 dir.
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@ -49,12 +49,12 @@ inline float random(float b1=0, float b2=1){
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\ANALYSE_PARAMETERS
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\INSERT_USER_DECLARATIONS
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\INSERT_INITIALISATION_FUNCTION
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\INSERT_INITIALISATION_FUNCTION
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// include here whatever specific files for your representation
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// Basically, this should include at least the following
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/** definition of representation:
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/** definition of representation:
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* class EASEAGenome MUST derive from EO<FitT> for some fitness
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*/
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#include "EASEAGenome.h"
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@ -64,23 +64,23 @@ inline float random(float b1=0, float b2=1){
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//*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
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// START fitness type: double or eoMaximizingFitness if you are maximizing
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// eoMinimizingFitness if you are minimizing
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typedef \MINIMAXI MyFitT ; // type of fitness
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typedef \MINIMAXI MyFitT ; // type of fitness
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// END fitness type
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//*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
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// Then define your EO objects using that fitness type
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typedef EASEAGenome<MyFitT> Indi; // ***MUST*** derive from EO
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typedef EASEAGenome<MyFitT> Indi; // ***MUST*** derive from EO
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\INSERT_USER_FUNCTIONS
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/** definition of evaluation:
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/** definition of evaluation:
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* class EASEAEvalFunc MUST derive from eoEvalFunc<EASEAGenome>
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* and should test for validity before doing any computation
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* see tutorial/Templates/evalFunc.tmpl
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*/
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#include "EASEAEvalFunc.h"
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/** definition of initialization:
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/** definition of initialization:
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* class EASEAGenomeInit MUST derive from eoInit<EASEAGenome>
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*/
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#include "EASEAInit.h"
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@ -93,34 +93,34 @@ typedef EASEAGenome<MyFitT> Indi; // ***MUST*** derive from EO
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// Use existing modules to define representation independent routines
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// These are parser-based definitions of objects
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// how to initialize the population
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// how to initialize the population
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// it IS representation independent if an eoInit is given
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#include <do/make_pop.h>
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#include <make_pop.h>
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eoPop<Indi >& make_pop(eoParser& _parser, eoState& _state, eoInit<Indi> & _init){
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return do_make_pop(_parser, _state, _init);
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}
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// the stopping criterion
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#include "do/make_continue.h"
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#include "make_continue.h"
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eoContinue<Indi>& make_continue(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi> & _eval){
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return do_make_continue(_parser, _state, _eval);
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}
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// outputs (stats, population dumps, ...)
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#include <do/make_checkpoint.h>
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#include <make_checkpoint.h>
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eoCheckPoint<Indi>& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi>& _eval, eoContinue<Indi>& _continue) {
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return do_make_checkpoint(_parser, _state, _eval, _continue);
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}
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// evolution engine (selection and replacement)
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#include <do/make_algo_easea.h>
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#include <make_algo_easea.h>
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eoAlgo<Indi>& make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<Indi>& _eval, eoContinue<Indi>& _continue, eoGenOp<Indi>& _op){
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return do_make_algo_scalar(_parser, _state, _eval, _continue, _op);
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}
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// simple call to the algo. stays there for consistency reasons
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// simple call to the algo. stays there for consistency reasons
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// no template for that one
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#include <do/make_run.h>
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#include <make_run.h>
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// the instanciating fitnesses
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#include <eoScalarFitness.h>
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void run_ea(eoAlgo<Indi>& _ga, eoPop<Indi>& _pop){
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@ -149,12 +149,12 @@ try {
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// a genotype initializer
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EASEAInit<Indi> init;
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// or, if you need some parameters, you might as well
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// or, if you need some parameters, you might as well
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// - write a constructor of the eoMyStructInit that uses a parser
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// - call it from here:
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// eoEASEAInit<Indi> init(parser);
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// Build the variation operator (any seq/prop construct)
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// here, a simple example with only 1 crossover (2->2, a QuadOp) and
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// one mutation, is given.
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@ -162,7 +162,7 @@ try {
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// A (first) crossover (possibly use the parser in its Ctor)
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EASEAQuadCrossover<Indi> cross /* (eoParser parser) */;
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// IF MORE THAN ONE:
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// read its relative rate in the combination
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@ -176,9 +176,9 @@ try {
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// 2- include that file here together with eoEASEAQuadCrossover above
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// 3- uncomment and duplicate the following lines:
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//
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// eoEASEASecondCrossover<Indi> cross2(eoParser parser);
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// double cross2Rate = parser.createParam(1.0, "cross2Rate", "Relative rate for crossover 2", '2', "Variation Operators").value();
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// cross.add(cross2, cross2Rate);
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// eoEASEASecondCrossover<Indi> cross2(eoParser parser);
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// double cross2Rate = parser.createParam(1.0, "cross2Rate", "Relative rate for crossover 2", '2', "Variation Operators").value();
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// cross.add(cross2, cross2Rate);
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// NOTE: if you want some gentle output, the last one shoudl be like
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// cross.add(cross, crossXXXRate, true);
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@ -201,9 +201,9 @@ try {
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// 2- include that file here together with eoEASEAMutation above
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// 3- uncomment and duplicate the following lines:
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//
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// eoEASEASecondMutation<Indi> mut2(eoParser parser);
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// double mut2Rate = parser.createParam(1.0, "mut2Rate", "Relative rate for mutation 2", '2', "Variation Operators").value();
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// mut.add(mut2, mut2Rate);
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// eoEASEASecondMutation<Indi> mut2(eoParser parser);
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// double mut2Rate = parser.createParam(1.0, "mut2Rate", "Relative rate for mutation 2", '2', "Variation Operators").value();
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// mut.add(mut2, mut2Rate);
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// NOTE: if you want some gentle output, the last one shoudl be like
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// mut.add(mut, mutXXXRate, true);
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@ -227,7 +227,7 @@ try {
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//// Now the representation-independent things
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//// Now the representation-independent things
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//
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// YOU SHOULD NOT NEED TO MODIFY ANYTHING BEYOND THIS POINT
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// unless you want to add specific statistics to the checkpoint
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@ -279,18 +279,18 @@ try {
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// (The above line is useful in Emacs-like editors)
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//
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//*************************************
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//
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//
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// EASEAGenome.h
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//
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//
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// C++ file generated by AESAE-EO v0.7
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//
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//
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//*************************************
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//
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#ifndef _EASEAGenome_h
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#define _EASEAGenome_h
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/**
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/**
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* Always write a comment in this format before class definition
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* if you want the class to be documented by Doxygen
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@ -299,7 +299,7 @@ try {
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* like eoVector for instance, if you handle a vector of something....
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* If you create a structure from scratch,
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* the only thing you need to provide are
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* the only thing you need to provide are
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* a default constructor
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* IO routines printOn and readFrom
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*
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@ -313,41 +313,41 @@ template< class FitT>
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class EASEAGenome: public EO<FitT> {
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public:
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/** Ctor: you MUST provide a default ctor.
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* though such individuals will generally be processed
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* though such individuals will generally be processed
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* by some eoInit object
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*/
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EASEAGenome() : EO<FitT>()
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{
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{
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// START Code of default Ctor of an EASEAGenome object
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\GENOME_CTOR
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\GENOME_CTOR
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// END Code of default Ctor of an EASEAGenome object
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}
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EASEAGenome(const EASEAGenome & arg) : EO<FitT>()
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{
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{
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\GENOME_CTOR
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copy(arg);
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copy(arg);
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}
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virtual ~EASEAGenome()
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{
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// START Code of Destructor of an EASEAGenome object
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\GENOME_DTOR
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\GENOME_DTOR
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// END Code of Destructor of an EASEAGenome object
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}
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virtual string className() const { return "EASEAGenome"; }
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EASEAGenome& operator=(const EASEAGenome & arg) {
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copy(arg);
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EASEAGenome& operator=(const EASEAGenome & arg) {
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copy(arg);
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return *this;
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}
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void copy(const EASEAGenome& genome)
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void copy(const EASEAGenome& genome)
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{
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if(&genome != this){
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\GENOME_DTOR
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\COPY_CTOR
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\COPY_CTOR
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if (genome.invalid()) { // copying an invalid genome
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fitness(FitT()); // put a valid value (i.e. non NAN)
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invalidate(); // but INVALIDATE the genome
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@ -356,8 +356,8 @@ public:
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fitness(genome.fitness());
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}
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}
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bool operator==(const EASEAGenome & genome) const {
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bool operator==(const EASEAGenome & genome) const {
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\EQUAL
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return true;
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}
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@ -372,7 +372,7 @@ public:
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// First write the fitness
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EO<FitT>::printOn(os);
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os << ' ';
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// START Code of default output
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// START Code of default output
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|
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/** HINTS
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* in EO we systematically write the sizes of things before the things
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@ -383,7 +383,7 @@ public:
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// END Code of default output
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}
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/** reading...
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/** reading...
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* of course, your readFrom must be able to read what printOn writes!!!
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*/
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void readFrom(istream& is)
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|
|
@ -412,11 +412,11 @@ public:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEAEvalFunc.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -424,7 +424,7 @@ public:
|
|||
Evaluator in EO: a functor that computes the fitness of an EO
|
||||
=============================================================
|
||||
*/
|
||||
|
||||
|
||||
#ifndef _EASEAEvalFunc_h
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#define _EASEAEvalFunc_h
|
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|
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|
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@ -435,7 +435,7 @@ Evaluator in EO: a functor that computes the fitness of an EO
|
|||
// include the base definition of eoEvalFunc
|
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#include "eoEvalFunc.h"
|
||||
|
||||
/**
|
||||
/**
|
||||
Always write a comment in this format before class definition
|
||||
if you want the class to be documented by Doxygen
|
||||
*/
|
||||
|
|
@ -446,7 +446,7 @@ public:
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|||
/// Ctor - no requirement
|
||||
// START eventually add or modify the anyVariable argument
|
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EASEAEvalFunc()
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// EASEAEvalFunc( varType _anyVariable) : anyVariable(_anyVariable)
|
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// EASEAEvalFunc( varType _anyVariable) : anyVariable(_anyVariable)
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// END eventually add or modify the anyVariable argument
|
||||
{
|
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// START Code of Ctor of an EASEAEvalFunc object
|
||||
|
|
@ -456,7 +456,7 @@ public:
|
|||
/** Actually compute the fitness
|
||||
*
|
||||
* @param EOT & _eo the EO object to evaluate
|
||||
* it should stay templatized to be usable
|
||||
* it should stay templatized to be usable
|
||||
* with any fitness type
|
||||
*/
|
||||
void operator()(EOT & genome)
|
||||
|
|
@ -484,11 +484,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEAInit.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -503,12 +503,12 @@ objects initialization in EO
|
|||
// include the base definition of eoInit
|
||||
#include <eoInit.h>
|
||||
|
||||
/**
|
||||
/**
|
||||
* Always write a comment in this format before class definition
|
||||
* if you want the class to be documented by Doxygen
|
||||
*
|
||||
* There is NO ASSUMPTION on the class GenoypeT.
|
||||
* In particular, it does not need to derive from EO (e.g. to initialize
|
||||
* In particular, it does not need to derive from EO (e.g. to initialize
|
||||
* atoms of an eoVector you will need an eoInit<AtomType>)
|
||||
*/
|
||||
template <class GenotypeT>
|
||||
|
|
@ -517,7 +517,7 @@ public:
|
|||
/// Ctor - no requirement
|
||||
// START eventually add or modify the anyVariable argument
|
||||
EASEAInit()
|
||||
// EASEAInit( varType & _anyVariable) : anyVariable(_anyVariable)
|
||||
// EASEAInit( varType & _anyVariable) : anyVariable(_anyVariable)
|
||||
// END eventually add or modify the anyVariable argument
|
||||
{
|
||||
// START Code of Ctor of an EASEAInit object
|
||||
|
|
@ -552,11 +552,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEAMutation.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -571,14 +571,14 @@ simple mutation operators
|
|||
|
||||
#include <eoOp.h>
|
||||
|
||||
/**
|
||||
/**
|
||||
* Always write a comment in this format before class definition
|
||||
* if you want the class to be documented by Doxygen
|
||||
*
|
||||
* THere is NO ASSUMPTION on the class GenoypeT.
|
||||
* In particular, it does not need to derive from EO
|
||||
*/
|
||||
template<class GenotypeT>
|
||||
template<class GenotypeT>
|
||||
class EASEAMutation: public eoMonOp<GenotypeT>
|
||||
{
|
||||
public:
|
||||
|
|
@ -587,7 +587,7 @@ public:
|
|||
*/
|
||||
// START eventually add or modify the anyVariable argument
|
||||
EASEAMutation()
|
||||
// EASEAMutation( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// EASEAMutation( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// END eventually add or modify the anyVariable argument
|
||||
{
|
||||
// START Code of Ctor of an EASEAMutation object
|
||||
|
|
@ -601,7 +601,7 @@ public:
|
|||
* modifies the parent
|
||||
* @param _genotype The parent genotype (will be modified)
|
||||
*/
|
||||
bool operator()(GenotypeT & _genotype)
|
||||
bool operator()(GenotypeT & _genotype)
|
||||
{
|
||||
// START code for mutation of the _genotype object
|
||||
\INSERT_MUTATOR
|
||||
|
|
@ -620,11 +620,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEAQuadCrossover.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -640,14 +640,14 @@ Quadratic crossover operators modify both genotypes
|
|||
|
||||
#include <eoOp.h>
|
||||
|
||||
/**
|
||||
/**
|
||||
* Always write a comment in this format before class definition
|
||||
* if you want the class to be documented by Doxygen
|
||||
*
|
||||
* THere is NO ASSUMPTION on the class GenoypeT.
|
||||
* In particular, it does not need to derive from EO
|
||||
*/
|
||||
template<class GenotypeT>
|
||||
template<class GenotypeT>
|
||||
class EASEAQuadCrossover: public eoQuadOp<GenotypeT>
|
||||
{
|
||||
public:
|
||||
|
|
@ -656,7 +656,7 @@ public:
|
|||
*/
|
||||
// START eventually add or modify the anyVariable argument
|
||||
EASEAQuadCrossover()
|
||||
// EASEAQuadCrossover( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// EASEAQuadCrossover( varType _anyVariable) : anyVariable(_anyVariable)
|
||||
// END eventually add or modify the anyVariable argument
|
||||
{
|
||||
// START Code of Ctor of an EASEAQuadCrossover object
|
||||
|
|
@ -669,11 +669,11 @@ public:
|
|||
/**
|
||||
* eoQuad crossover - modifies both genotypes
|
||||
*/
|
||||
bool operator()(GenotypeT& child1, GenotypeT & child2)
|
||||
bool operator()(GenotypeT& child1, GenotypeT & child2)
|
||||
{
|
||||
GenotypeT parent1(child1);
|
||||
GenotypeT parent2(child2);
|
||||
|
||||
|
||||
// START code for crossover of child1 and child2 objects
|
||||
\INSERT_CROSSOVER
|
||||
return (parent1!=child1)||(parent2!=child2);
|
||||
|
|
@ -693,11 +693,11 @@ private:
|
|||
// (The above line is useful in Emacs-like editors)
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
//
|
||||
// EASEA_make_continue.h
|
||||
//
|
||||
//
|
||||
// C++ file generated by AESAE-EO v0.7
|
||||
//
|
||||
//
|
||||
//*************************************
|
||||
//
|
||||
|
||||
|
|
@ -838,11 +838,11 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
|
|||
#endif
|
||||
|
||||
\START_EO_PARAM_TPL#*************************************
|
||||
#
|
||||
#
|
||||
# EASEA.prm
|
||||
#
|
||||
#
|
||||
# Parameter file generated by AESAE-EO v0.7
|
||||
#
|
||||
#
|
||||
#*************************************
|
||||
###### General ######
|
||||
# --help=0 # -h : Prints this message
|
||||
|
|
@ -901,11 +901,11 @@ eoContinue<Indi> & do_make_continue(eoParser& _parser, eoState& _state, eoEvalFu
|
|||
--pMut=\MUT_PROB # -M : Probability of Mutation
|
||||
|
||||
\START_EO_MAKEFILE_TPL#*************************************
|
||||
#
|
||||
#
|
||||
# EASEA.mak
|
||||
#
|
||||
#
|
||||
# Makefile generated by AESAE-EO v0.7
|
||||
#
|
||||
#
|
||||
#*************************************
|
||||
|
||||
# sample makefile for building an EA evolving a new genotype
|
||||
|
|
@ -929,7 +929,7 @@ SOURCES = EASEA.cpp \
|
|||
ALL = EASEA
|
||||
|
||||
EASEA : $(SOURCES)
|
||||
c++ -g -I. -I$(DIR_EO)/src -o $@ EASEA.cpp $(LIB_EO) -lm
|
||||
c++ -g -I. -I$(DIR_EO)/src -o $@ EASEA.cpp $(LIB_EO) -lm
|
||||
|
||||
all : $(ALL)
|
||||
|
||||
|
|
|
|||
16
eo/tutorial/Templates/Makefile.am.src-tmpl
Normal file
16
eo/tutorial/Templates/Makefile.am.src-tmpl
Normal file
|
|
@ -0,0 +1,16 @@
|
|||
bin_PROGRAMS = MyStruct
|
||||
|
||||
MyStruct_SOURCES = MyStructEA.cpp \
|
||||
eoMyStruct.h \
|
||||
eoMyStructEvalFunc.h \
|
||||
eoMyStructInit.h \
|
||||
eoMyStructMutation.h \
|
||||
eoMyStructQuadCrossover.h
|
||||
|
||||
|
||||
|
||||
dnl Local Variables:
|
||||
dnl coding: iso-8859-1
|
||||
dnl mode: makefile-automake
|
||||
dnl fill-column: 80
|
||||
dnl End:
|
||||
8
eo/tutorial/Templates/Makefile.am.top-tmpl
Normal file
8
eo/tutorial/Templates/Makefile.am.top-tmpl
Normal file
|
|
@ -0,0 +1,8 @@
|
|||
SUBDIRS = src
|
||||
|
||||
|
||||
dnl Local Variables:
|
||||
dnl coding: iso-8859-1
|
||||
dnl mode: makefile-automake
|
||||
dnl fill-column: 80
|
||||
dnl End:
|
||||
|
|
@ -17,7 +17,7 @@ main file BitEA in tutorial/Lesson4 dir.
|
|||
Or you can wait until we do it :-)
|
||||
*/
|
||||
|
||||
// Miscilaneous include and declaration
|
||||
// Miscilaneous include and declaration
|
||||
#include <iostream>
|
||||
using namespace std;
|
||||
|
||||
|
|
@ -29,17 +29,17 @@ using namespace std;
|
|||
// include here whatever specific files for your representation
|
||||
// Basically, this should include at least the following
|
||||
|
||||
/** definition of representation:
|
||||
/** definition of representation:
|
||||
* class eoMyStruct MUST derive from EO<FitT> for some fitness
|
||||
*/
|
||||
#include "eoMyStruct.h"
|
||||
|
||||
/** definition of initilizqtion:
|
||||
/** definition of initilizqtion:
|
||||
* class eoMyStructInit MUST derive from eoInit<eoMyStruct>
|
||||
*/
|
||||
#include "eoMyStructInit.h"
|
||||
|
||||
/** definition of evaluation:
|
||||
/** definition of evaluation:
|
||||
* class eoMyStructEvalFunc MUST derive from eoEvalFunc<eoMyStruct>
|
||||
* and should test for validity before doing any computation
|
||||
* see tutorial/Templates/evalFunc.tmpl
|
||||
|
|
@ -51,19 +51,19 @@ using namespace std;
|
|||
//*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
|
||||
// START fitness type: double or eoMaximizingFitness if you are maximizing
|
||||
// eoMinimizingFitness if you are minimizing
|
||||
typedef eoMinimizingFitness MyFitT ; // type of fitness
|
||||
typedef eoMinimizingFitness MyFitT ; // type of fitness
|
||||
// END fitness type
|
||||
//*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
|
||||
|
||||
// Then define your EO objects using that fitness type
|
||||
typedef eoMyStruct<MyFitT> Indi; // ***MUST*** derive from EO
|
||||
typedef eoMyStruct<MyFitT> Indi; // ***MUST*** derive from EO
|
||||
|
||||
// create an initializer
|
||||
#include "make_genotype_MyStruct.h"
|
||||
eoInit<Indi> & make_genotype(eoParser& _parser, eoState&_state, Indi _eo)
|
||||
{
|
||||
return do_make_genotype(_parser, _state, _eo);
|
||||
}
|
||||
}
|
||||
|
||||
// and the variation operaotrs
|
||||
#include "make_op_MyStruct.h"
|
||||
|
|
@ -75,38 +75,38 @@ eoGenOp<Indi>& make_op(eoParser& _parser, eoState& _state, eoInit<Indi>& _init)
|
|||
// Use existing modules to define representation independent routines
|
||||
// These are parser-based definitions of objects
|
||||
|
||||
// how to initialize the population
|
||||
// how to initialize the population
|
||||
// it IS representation independent if an eoInit is given
|
||||
#include <do/make_pop.h>
|
||||
#include <make_pop.h>
|
||||
eoPop<Indi >& make_pop(eoParser& _parser, eoState& _state, eoInit<Indi> & _init)
|
||||
{
|
||||
return do_make_pop(_parser, _state, _init);
|
||||
}
|
||||
|
||||
// the stopping criterion
|
||||
#include <do/make_continue.h>
|
||||
#include <make_continue.h>
|
||||
eoContinue<Indi>& make_continue(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi> & _eval)
|
||||
{
|
||||
return do_make_continue(_parser, _state, _eval);
|
||||
}
|
||||
|
||||
// outputs (stats, population dumps, ...)
|
||||
#include <do/make_checkpoint.h>
|
||||
eoCheckPoint<Indi>& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi>& _eval, eoContinue<Indi>& _continue)
|
||||
#include <make_checkpoint.h>
|
||||
eoCheckPoint<Indi>& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi>& _eval, eoContinue<Indi>& _continue)
|
||||
{
|
||||
return do_make_checkpoint(_parser, _state, _eval, _continue);
|
||||
}
|
||||
|
||||
// evolution engine (selection and replacement)
|
||||
#include <do/make_algo_scalar.h>
|
||||
#include <make_algo_scalar.h>
|
||||
eoAlgo<Indi>& make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<Indi>& _eval, eoContinue<Indi>& _continue, eoGenOp<Indi>& _op)
|
||||
{
|
||||
return do_make_algo_scalar(_parser, _state, _eval, _continue, _op);
|
||||
}
|
||||
|
||||
// simple call to the algo. stays there for consistency reasons
|
||||
// simple call to the algo. stays there for consistency reasons
|
||||
// no template for that one
|
||||
#include <do/make_run.h>
|
||||
#include <make_run.h>
|
||||
// the instanciating fitnesses
|
||||
#include <eoScalarFitness.h>
|
||||
void run_ea(eoAlgo<Indi>& _ga, eoPop<Indi>& _pop)
|
||||
|
|
@ -141,7 +141,7 @@ int main(int argc, char* argv[])
|
|||
eoGenOp<Indi>& op = make_op(parser, state, init);
|
||||
|
||||
|
||||
//// Now the representation-independent things
|
||||
//// Now the representation-independent things
|
||||
//
|
||||
// YOU SHOULD NOT NEED TO MODIFY ANYTHING BEYOND THIS POINT
|
||||
// unless you want to add specific statistics to the checkpoint
|
||||
|
|
|
|||
|
|
@ -73,28 +73,28 @@ typedef eoMyStruct<MyFitT> Indi; // ***MUST*** derive from EO
|
|||
|
||||
// how to initialize the population
|
||||
// it IS representation independent if an eoInit is given
|
||||
#include <do/make_pop.h>
|
||||
#include <make_pop.h>
|
||||
eoPop<Indi >& make_pop(eoParser& _parser, eoState& _state, eoInit<Indi> & _init)
|
||||
{
|
||||
return do_make_pop(_parser, _state, _init);
|
||||
}
|
||||
|
||||
// the stopping criterion
|
||||
#include <do/make_continue.h>
|
||||
#include <make_continue.h>
|
||||
eoContinue<Indi>& make_continue(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi> & _eval)
|
||||
{
|
||||
return do_make_continue(_parser, _state, _eval);
|
||||
}
|
||||
|
||||
// outputs (stats, population dumps, ...)
|
||||
#include <do/make_checkpoint.h>
|
||||
#include <make_checkpoint.h>
|
||||
eoCheckPoint<Indi>& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<Indi>& _eval, eoContinue<Indi>& _continue)
|
||||
{
|
||||
return do_make_checkpoint(_parser, _state, _eval, _continue);
|
||||
}
|
||||
|
||||
// evolution engine (selection and replacement)
|
||||
#include <do/make_algo_scalar.h>
|
||||
#include <make_algo_scalar.h>
|
||||
eoAlgo<Indi>& make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<Indi>& _eval, eoContinue<Indi>& _continue, eoGenOp<Indi>& _op, eoDistance<Indi> *_dist = NULL)
|
||||
{
|
||||
return do_make_algo_scalar(_parser, _state, _eval, _continue, _op, _dist);
|
||||
|
|
@ -102,7 +102,7 @@ eoAlgo<Indi>& make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<I
|
|||
|
||||
// simple call to the algo. stays there for consistency reasons
|
||||
// no template for that one
|
||||
#include <do/make_run.h>
|
||||
#include <make_run.h>
|
||||
// the instanciating fitnesses
|
||||
#include <eoScalarFitness.h>
|
||||
void run_ea(eoAlgo<Indi>& _ga, eoPop<Indi>& _pop)
|
||||
|
|
|
|||
|
|
@ -1,149 +1,15 @@
|
|||
Quick NOTE: This version of README is obsolete (May 25, 2004)
|
||||
In particular, a simpler version of the algorithm can be generated
|
||||
using the script
|
||||
createSimple
|
||||
This Templates directory contains template files of an EO project and
|
||||
a script createEOproject.sh to create a complete new EO project.
|
||||
|
||||
with the same syntax. It is also more powerful, allowing for instance
|
||||
to create you own statistics on the population, saving it in a file
|
||||
and/or plotting on on-line during the run (see eoStat.tmpl).
|
||||
More details some day, when I have some time ...
|
||||
The template requires a complete installation of EO.
|
||||
|
||||
============= Old README (most is still accurate, though) ==========
|
||||
In particular, the C++ compiler must find the EO include files and the
|
||||
linker must find the EO libraries. Most probably, that means that you
|
||||
have to set the variables CPLUS_INCLUDE_PATH and LIBRARY_PATH, i.e.
|
||||
for a standard installation and using tcsh:
|
||||
|
||||
This directory contains sample files that should make it easy to
|
||||
create an EO algorithm to evolve any type of structure
|
||||
(EO comes with two examples, bitstrings and vector of real variables,
|
||||
so you'll need this as soon as you want to evolve something else).
|
||||
setenv CPLUS_INCLUDE_PATH /usr/local/include/eo:"$CPLUS_INCLUDE_PATH"
|
||||
setenv LIBRARY_PATH /usr/local/lib:"$LIBRARY_PATH"
|
||||
|
||||
At the moment, only algorithms involving a scalar fitness (double)
|
||||
are implemented (see test dir for Pareto optimization of multiple-
|
||||
objective fitness - or be patient :-)
|
||||
|
||||
This file will help you to build the same algorithm than the ones
|
||||
in the Lesson4 of the tutorial, but with YOUR genotype instead of
|
||||
bitstrings or vector<double>. More details in Lesson5 of the tutorial.
|
||||
|
||||
It is assumed in the following that you have read the first part of
|
||||
the tutorial (Lessons 1 to 4).
|
||||
|
||||
Creating the algorithm for your genotype
|
||||
----------------------------------------
|
||||
In what follows, we will suppose that you want to evolve some data
|
||||
structure, and that you have enough programming skills to be able to
|
||||
write C code for its random initilialization, its crossover, its
|
||||
mutation and the computation of its fitness.
|
||||
|
||||
The helper script * create.sh * will create for you the files you need
|
||||
from the samples in tutorial/Templates dir, and all you'll have to do
|
||||
is to include the actual code where indicated in those files (between
|
||||
keywords START and END).
|
||||
|
||||
First, let's choose a name: let's call the new EO class eoAppli.
|
||||
All newly created classes will be named eoAppliXXX (in the file
|
||||
eoAppliXXX)
|
||||
|
||||
1- cd to the tutorial dir
|
||||
|
||||
2- create the directory for your application (let's assume you call it
|
||||
APPLICATION): type in
|
||||
|
||||
mkdir APPLICATION
|
||||
|
||||
3- go to the Templates dir
|
||||
|
||||
cd Templates
|
||||
|
||||
and run the helper script create.sh with the following arguments
|
||||
|
||||
./create.sh Appli ../APPLICATION
|
||||
|
||||
4- cd to the APPLICATION dir (cd ../APPLICATION).
|
||||
You should see there the following files:
|
||||
AppliEA.cpp the main file, includes all other, to be compiled
|
||||
Makefile with default target eoAppliEA
|
||||
eoAppli.h class eoAppli<FitT>, FitT = template fitness
|
||||
eoAppliEvalFunc.h class for the computation of fotness
|
||||
eoAppliInit.h class for genotype initlialization
|
||||
eoAppliMutation.h class for mutation
|
||||
eoAppliQuadCrossover.h class for (quadratic) crossover
|
||||
make_genotype_Appli.h helper function that create the initializer
|
||||
make_op_Appli.h helper function that creates the variatin operators
|
||||
|
||||
Note: You can go directly to step 6 and 7: you'll get a lot of
|
||||
warnings, but will be able to run an EA that does nothing!
|
||||
|
||||
5- Edit those files to suit your needs. The minimal addition you'll need
|
||||
to make are
|
||||
in eoAppli.h define your genotype
|
||||
in eoAppliInit.h define the initialization of one genotype
|
||||
in eoAppliMutation.h define the mutation of one genotype
|
||||
in eoAppliQuadCrossover.h define the crossover of 2 genotypes
|
||||
|
||||
HINT: look for keywords START and END and modify code in between.
|
||||
|
||||
6- Compile eoAppliEA.cpp. If your APPLICATION dir is in the tutorial
|
||||
dir, you don't need to modify Makefile. Just type in
|
||||
|
||||
% make
|
||||
|
||||
7- Run the resulting program:
|
||||
|
||||
% eoAppliEA
|
||||
|
||||
The default output is one line per generation with the generation
|
||||
number, the number of evaluations performed, the best and average
|
||||
fitnesses in the population.
|
||||
The algorithm stops by default after 100 generations.
|
||||
|
||||
8- Customize the parameters: copy eoAppliEA.status into
|
||||
e.g. eoAppliEA.param, edit eoAppliEA.param (uncomment the lines you
|
||||
want to become active), and run
|
||||
|
||||
% eoAppliEA @eoAppliEA.param
|
||||
|
||||
(see the Lesson 5 of the tutorial for more details now).
|
||||
|
||||
HINTS
|
||||
-----
|
||||
|
||||
1- If some new classes you create require some user parameter, you can
|
||||
either read them in the file where they are created (e.g.
|
||||
make_op_Appli.h for variation operators), or pass the eoParser to the
|
||||
constructor of the class, and read the parameter from the parser.
|
||||
|
||||
2- If you stick to privacy for the data in your EO class, you will
|
||||
probably need to write accessors to those data, as well as some public
|
||||
methods to modify them, as soon as some other methods need them too.
|
||||
|
||||
3- The sample make_op_Appli.h supposes that you ony have one crossover
|
||||
and one mutation operator. However, the code for multiple operators is
|
||||
there: you can have for instance 2 crossover operators, and choose
|
||||
among them according to relative weights (proportional choice) - same
|
||||
for mutation. Look at the operator section in eoAppliEA.cpp In
|
||||
particular, the user parameters cross1Rate and mut1Rate are totally
|
||||
useless for a single operator.
|
||||
|
||||
To add another operator, you have to create another class by mimicking
|
||||
what has been done for the first operator.
|
||||
For instance, let's suppose you want to create another mutation.
|
||||
|
||||
* duplicate the code for eoAppliMutation class
|
||||
* in the second version, change the class name (eoAppliMutation) into
|
||||
another name (let's say eoAppliBetterMutation) - you must change the
|
||||
name in the class declaration, in the constructor and in the
|
||||
className() method.
|
||||
* in the new eoAppliBetterMutation class, change the code for the
|
||||
operator() - and eventually the code for the constructor.
|
||||
* in the make_op_Appli.h file, in the mutation section, uncomment the
|
||||
lines
|
||||
mut = new eoAppliSecondMutation<Indi>(varType _anyVariable);
|
||||
_state.storeFunctor(mut);
|
||||
double mut2Rate = _parser.createParam(1.0, "mut2Rate", "Relative rate for mutation 2", '2', "Variation Operators").value();
|
||||
propMutation.add(*mut, mut2Rate);
|
||||
|
||||
and change the name of the class from eoAppliSecondMutation to your
|
||||
name eoAppliBetterMutation (you can also change the keyword from
|
||||
mut2Rate to something more meaningful like BetterMutationRate).
|
||||
You're done!
|
||||
|
||||
In case of problem: Marc.Schoenauer@inria.fr
|
||||
See README.manual for more details.
|
||||
|
|
|
|||
143
eo/tutorial/Templates/README.manual
Normal file
143
eo/tutorial/Templates/README.manual
Normal file
|
|
@ -0,0 +1,143 @@
|
|||
This is the old template-directory README. Most of this information is
|
||||
still accurate and it contains more details than the new README.
|
||||
However, see there first for the creation of new projects.
|
||||
|
||||
========================================================================
|
||||
|
||||
This directory contains sample files that should make it easy to
|
||||
create an EO algorithm to evolve any type of structure
|
||||
(EO comes with two examples, bitstrings and vector of real variables,
|
||||
so you'll need this as soon as you want to evolve something else).
|
||||
|
||||
At the moment, only algorithms involving a scalar fitness (double)
|
||||
are implemented (see test dir for Pareto optimization of multiple-
|
||||
objective fitness - or be patient :-)
|
||||
|
||||
This file will help you to build the same algorithm than the ones
|
||||
in the Lesson4 of the tutorial, but with YOUR genotype instead of
|
||||
bitstrings or vector<double>. More details in Lesson5 of the tutorial.
|
||||
|
||||
It is assumed in the following that you have read the first part of
|
||||
the tutorial (Lessons 1 to 4).
|
||||
|
||||
Creating the algorithm for your genotype
|
||||
----------------------------------------
|
||||
In what follows, we will suppose that you want to evolve some data
|
||||
structure, and that you have enough programming skills to be able to
|
||||
write C code for its random initilialization, its crossover, its
|
||||
mutation and the computation of its fitness.
|
||||
|
||||
The helper script * create.sh * will create for you the files you need
|
||||
from the samples in tutorial/Templates dir, and all you'll have to do
|
||||
is to include the actual code where indicated in those files (between
|
||||
keywords START and END).
|
||||
|
||||
First, let's choose a name: let's call the new EO class eoAppli.
|
||||
All newly created classes will be named eoAppliXXX (in the file
|
||||
eoAppliXXX)
|
||||
|
||||
1- cd to the tutorial dir
|
||||
|
||||
2- create the directory for your application (let's assume you call it
|
||||
APPLICATION): type in
|
||||
|
||||
mkdir APPLICATION
|
||||
|
||||
3- go to the Templates dir
|
||||
|
||||
cd Templates
|
||||
|
||||
and run the helper script create.sh with the following arguments
|
||||
|
||||
./create.sh Appli ../APPLICATION
|
||||
|
||||
4- cd to the APPLICATION dir (cd ../APPLICATION).
|
||||
You should see there the following files:
|
||||
AppliEA.cpp the main file, includes all other, to be compiled
|
||||
Makefile with default target eoAppliEA
|
||||
eoAppli.h class eoAppli<FitT>, FitT = template fitness
|
||||
eoAppliEvalFunc.h class for the computation of fotness
|
||||
eoAppliInit.h class for genotype initlialization
|
||||
eoAppliMutation.h class for mutation
|
||||
eoAppliQuadCrossover.h class for (quadratic) crossover
|
||||
make_genotype_Appli.h helper function that create the initializer
|
||||
make_op_Appli.h helper function that creates the variatin operators
|
||||
|
||||
Note: You can go directly to step 6 and 7: you'll get a lot of
|
||||
warnings, but will be able to run an EA that does nothing!
|
||||
|
||||
5- Edit those files to suit your needs. The minimal addition you'll need
|
||||
to make are
|
||||
in eoAppli.h define your genotype
|
||||
in eoAppliInit.h define the initialization of one genotype
|
||||
in eoAppliMutation.h define the mutation of one genotype
|
||||
in eoAppliQuadCrossover.h define the crossover of 2 genotypes
|
||||
|
||||
HINT: look for keywords START and END and modify code in between.
|
||||
|
||||
6- Compile eoAppliEA.cpp. If your APPLICATION dir is in the tutorial
|
||||
dir, you don't need to modify Makefile. Just type in
|
||||
|
||||
% make
|
||||
|
||||
7- Run the resulting program:
|
||||
|
||||
% eoAppliEA
|
||||
|
||||
The default output is one line per generation with the generation
|
||||
number, the number of evaluations performed, the best and average
|
||||
fitnesses in the population.
|
||||
The algorithm stops by default after 100 generations.
|
||||
|
||||
8- Customize the parameters: copy eoAppliEA.status into
|
||||
e.g. eoAppliEA.param, edit eoAppliEA.param (uncomment the lines you
|
||||
want to become active), and run
|
||||
|
||||
% eoAppliEA @eoAppliEA.param
|
||||
|
||||
(see the Lesson 5 of the tutorial for more details now).
|
||||
|
||||
HINTS
|
||||
-----
|
||||
|
||||
1- If some new classes you create require some user parameter, you can
|
||||
either read them in the file where they are created (e.g.
|
||||
make_op_Appli.h for variation operators), or pass the eoParser to the
|
||||
constructor of the class, and read the parameter from the parser.
|
||||
|
||||
2- If you stick to privacy for the data in your EO class, you will
|
||||
probably need to write accessors to those data, as well as some public
|
||||
methods to modify them, as soon as some other methods need them too.
|
||||
|
||||
3- The sample make_op_Appli.h supposes that you ony have one crossover
|
||||
and one mutation operator. However, the code for multiple operators is
|
||||
there: you can have for instance 2 crossover operators, and choose
|
||||
among them according to relative weights (proportional choice) - same
|
||||
for mutation. Look at the operator section in eoAppliEA.cpp In
|
||||
particular, the user parameters cross1Rate and mut1Rate are totally
|
||||
useless for a single operator.
|
||||
|
||||
To add another operator, you have to create another class by mimicking
|
||||
what has been done for the first operator.
|
||||
For instance, let's suppose you want to create another mutation.
|
||||
|
||||
* duplicate the code for eoAppliMutation class
|
||||
* in the second version, change the class name (eoAppliMutation) into
|
||||
another name (let's say eoAppliBetterMutation) - you must change the
|
||||
name in the class declaration, in the constructor and in the
|
||||
className() method.
|
||||
* in the new eoAppliBetterMutation class, change the code for the
|
||||
operator() - and eventually the code for the constructor.
|
||||
* in the make_op_Appli.h file, in the mutation section, uncomment the
|
||||
lines
|
||||
mut = new eoAppliSecondMutation<Indi>(varType _anyVariable);
|
||||
_state.storeFunctor(mut);
|
||||
double mut2Rate = _parser.createParam(1.0, "mut2Rate", "Relative rate for mutation 2", '2', "Variation Operators").value();
|
||||
propMutation.add(*mut, mut2Rate);
|
||||
|
||||
and change the name of the class from eoAppliSecondMutation to your
|
||||
name eoAppliBetterMutation (you can also change the keyword from
|
||||
mut2Rate to something more meaningful like BetterMutationRate).
|
||||
You're done!
|
||||
|
||||
In case of problem: Marc.Schoenauer@inria.fr
|
||||
10
eo/tutorial/Templates/README.tmpl
Normal file
10
eo/tutorial/Templates/README.tmpl
Normal file
|
|
@ -0,0 +1,10 @@
|
|||
This is an autogenerated EO project
|
||||
|
||||
Fill in the marked code-snippets in the files in src/ and you have a
|
||||
complete EA project.
|
||||
|
||||
The project has a complete build-infrastructure based on
|
||||
automake/autoconf. You can simply run "make" in this directory to have
|
||||
the program compiled. The executable build will be in src/.
|
||||
|
||||
Enjoy!
|
||||
39
eo/tutorial/Templates/configure.ac.tmpl
Normal file
39
eo/tutorial/Templates/configure.ac.tmpl
Normal file
|
|
@ -0,0 +1,39 @@
|
|||
# EO template autogeneration configure.ac template
|
||||
#
|
||||
# Copyright (C) 2006 Jochen Küpper <jochen@fhi-berlin.mpg.de>
|
||||
#
|
||||
dnl Process this file with autoconf to produce a configure script.
|
||||
AC_INIT(MyStruct, 0.1)
|
||||
AC_CONFIG_SRCDIR(src/eoMyStruct.h)
|
||||
AM_INIT_AUTOMAKE
|
||||
AC_CONFIG_HEADERS(config.h)
|
||||
|
||||
dnl Checks for programs.
|
||||
AC_PROG_CC
|
||||
AC_PROG_CXX
|
||||
AC_ISC_POSIX
|
||||
|
||||
dnl Checks for header files.
|
||||
AC_STDC_HEADERS
|
||||
AC_LANG(C++)
|
||||
AC_CHECK_HEADERS([eo], [], [AC_ERROR(Evolving Objects headers are required)])
|
||||
|
||||
dnl Checks for libraries.
|
||||
AC_LANG(C++)
|
||||
AC_CHECK_LIB([eoutils], [main], [],
|
||||
AC_MSG_ERROR([Evolving Objects utility library is required.]))
|
||||
AC_CHECK_LIB([eo], [main], [],
|
||||
AC_MSG_ERROR([Evolving Objects library is required.]))
|
||||
AC_CHECK_LIB([es], [main], [],
|
||||
AC_MSG_ERROR([EO Evolutionary strategies library is required.]))
|
||||
|
||||
dnl Checks for library functions.
|
||||
|
||||
AC_OUTPUT([Makefile src/Makefile])
|
||||
|
||||
|
||||
dnl Local Variables:
|
||||
dnl coding: iso-8859-1
|
||||
dnl mode: autoconf
|
||||
dnl fill-column: 80
|
||||
dnl End:
|
||||
79
eo/tutorial/Templates/createEOproject.sh
Executable file
79
eo/tutorial/Templates/createEOproject.sh
Executable file
|
|
@ -0,0 +1,79 @@
|
|||
#! /bin/tcsh -f
|
||||
#
|
||||
# Script to create a completely new EO project from templates
|
||||
#
|
||||
# Originally by Marc Schoenauer
|
||||
# Copyright (C) 2006 Jochen Küpper <jochen@fhi-berlin.mpg.de>
|
||||
|
||||
if ($PWD:t != Templates) then
|
||||
echo "You must start this shell script from the EO Template directory"
|
||||
exit
|
||||
endif
|
||||
|
||||
if ($#argv < 1) then
|
||||
echo "Usage: $0 ApplicationName [TargetDirName]"
|
||||
echo " This will create ../TargetDirName if necessary (default dir name = ApplicationName),"
|
||||
echo " and will also put all the files there that are strictly necessary to compile and run"
|
||||
echo " your application."
|
||||
exit
|
||||
endif
|
||||
|
||||
# we're going to do something
|
||||
echo " "
|
||||
if ($#argv == 1) then
|
||||
set TargetDir = ../$1
|
||||
else
|
||||
set TargetDir = ../$2
|
||||
endif
|
||||
if ( -d $TargetDir ) then
|
||||
echo "Warning: The target directory does exist already."
|
||||
echo -n "Overwrite (yes/no)? "
|
||||
set REP = $<
|
||||
if ($REP != "yes") then
|
||||
echo "Stopping, nothing done!"
|
||||
exit
|
||||
endif
|
||||
else if ( -e $TargetDir ) then
|
||||
echo "Warning: $TargetDir exist but isn't a directory."
|
||||
echo "Stopping, nothing done!"
|
||||
exit
|
||||
endif
|
||||
mkdir -p $TargetDir/src
|
||||
|
||||
|
||||
# creating files
|
||||
echo "Creating source files for application $1 in $TargetDir/src"
|
||||
sed s/MyStruct/$1/g eoMyStruct.tmpl > $TargetDir/src/eo$1.h
|
||||
sed s/MyStruct/$1/g init.tmpl > $TargetDir/src/eo$1Init.h
|
||||
sed s/MyStruct/$1/g stat.tmpl > $TargetDir/src/eo$1Stat.h
|
||||
sed s/MyStruct/$1/g evalFunc.tmpl > $TargetDir/src/eo$1EvalFunc.h
|
||||
sed s/MyStruct/$1/g mutation.tmpl > $TargetDir/src/eo$1Mutation.h
|
||||
sed s/MyStruct/$1/g quadCrossover.tmpl > $TargetDir/src/eo$1QuadCrossover.h
|
||||
sed s/MyStruct/$1/g MyStructSEA.cpp > $TargetDir/src/$1EA.cpp
|
||||
|
||||
echo "Creating build-support files for application $1 in $TargetDir"
|
||||
sed s/MyStruct/$1/g configure.ac.tmpl > $TargetDir/configure.ac
|
||||
sed s/MyStruct/$1/g Makefile.am.top-tmpl > $TargetDir/Makefile.am
|
||||
sed s/MyStruct/$1/g Makefile.am.src-tmpl > $TargetDir/src/Makefile.am
|
||||
sed s/MyStruct/$1/g README.tmpl > $TargetDir/README
|
||||
touch $TargetDir/AUTHORS
|
||||
touch $TargetDir/ChangeLog
|
||||
touch $TargetDir/NEWS
|
||||
|
||||
echo "Successfully created project $1 in $TargetDir!"
|
||||
echo "Start building the new project"
|
||||
|
||||
|
||||
# building new project
|
||||
cd $TargetDir
|
||||
aclocal || exit
|
||||
autoheader || exit
|
||||
automake --add-missing --copy --gnu || exit
|
||||
autoconf || exit
|
||||
./configure || exit
|
||||
make || exit
|
||||
|
||||
|
||||
# done
|
||||
echo "Project $1 successfully build in $TargetDir!"
|
||||
echo "Implement your code and enjoy."
|
||||
|
|
@ -17,7 +17,7 @@ and src/es (for real vectors).
|
|||
|
||||
*/
|
||||
|
||||
// Miscilaneous include and declaration
|
||||
// Miscilaneous include and declaration
|
||||
#include <iostream>
|
||||
using namespace std;
|
||||
|
||||
|
|
@ -29,7 +29,7 @@ using namespace std;
|
|||
// include here whatever specific files for your representation
|
||||
// Basically, this should include at least the following
|
||||
|
||||
/** definition of representation:
|
||||
/** definition of representation:
|
||||
* class eoMyStruct MUST derive from EO<FitT> for some fitness
|
||||
*/
|
||||
#include "eoMyStruct.h"
|
||||
|
|
@ -43,12 +43,12 @@ using namespace std;
|
|||
// eoInit<eoMyStruct<double>> & make_genotype(eoParser& _parser, eoState&_state, eoMyStruct<double> _eo)
|
||||
// {
|
||||
// return do_make_genotype(_parser, _state, _eo);
|
||||
// }
|
||||
// }
|
||||
|
||||
// eoInit<eoMyStruct<eoMinimizingFitness>> & make_genotype(eoParser& _parser, eoState&_state, eoMyStruct<eoMinimizingFitness> _eo)
|
||||
// {
|
||||
// return do_make_genotype(_parser, _state, _eo);
|
||||
// }
|
||||
// }
|
||||
|
||||
// same thing for the variation operaotrs
|
||||
//---------------------------------------
|
||||
|
|
@ -65,9 +65,9 @@ using namespace std;
|
|||
|
||||
// The following modules use ***representation independent*** routines
|
||||
|
||||
// how to initialize the population
|
||||
// how to initialize the population
|
||||
// it IS representation independent if an eoInit is given
|
||||
#include <do/make_pop.h>
|
||||
#include <make_pop.h>
|
||||
eoPop<eoMyStruct<double> >& make_pop(eoParser& _parser, eoState& _state, eoInit<eoMyStruct<double> > & _init)
|
||||
{
|
||||
return do_make_pop(_parser, _state, _init);
|
||||
|
|
@ -79,7 +79,7 @@ eoPop<eoMyStruct<eoMinimizingFitness> >& make_pop(eoParser& _parser, eoState& _
|
|||
}
|
||||
|
||||
// the stopping criterion
|
||||
#include <do/make_continue.h>
|
||||
#include <make_continue.h>
|
||||
eoContinue<eoMyStruct<double> >& make_continue(eoParser& _parser, eoState& _state, eoEvalFuncCounter<eoMyStruct<double> > & _eval)
|
||||
{
|
||||
return do_make_continue(_parser, _state, _eval);
|
||||
|
|
@ -91,19 +91,19 @@ eoContinue<eoMyStruct<eoMinimizingFitness> >& make_continue(eoParser& _parser, e
|
|||
}
|
||||
|
||||
// outputs (stats, population dumps, ...)
|
||||
#include <do/make_checkpoint.h>
|
||||
eoCheckPoint<eoMyStruct<double> >& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<eoMyStruct<double> >& _eval, eoContinue<eoMyStruct<double> >& _continue)
|
||||
#include <make_checkpoint.h>
|
||||
eoCheckPoint<eoMyStruct<double> >& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<eoMyStruct<double> >& _eval, eoContinue<eoMyStruct<double> >& _continue)
|
||||
{
|
||||
return do_make_checkpoint(_parser, _state, _eval, _continue);
|
||||
}
|
||||
|
||||
eoCheckPoint<eoMyStruct<eoMinimizingFitness> >& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<eoMyStruct<eoMinimizingFitness> >& _eval, eoContinue<eoMyStruct<eoMinimizingFitness> >& _continue)
|
||||
eoCheckPoint<eoMyStruct<eoMinimizingFitness> >& make_checkpoint(eoParser& _parser, eoState& _state, eoEvalFuncCounter<eoMyStruct<eoMinimizingFitness> >& _eval, eoContinue<eoMyStruct<eoMinimizingFitness> >& _continue)
|
||||
{
|
||||
return do_make_checkpoint(_parser, _state, _eval, _continue);
|
||||
}
|
||||
|
||||
// evolution engine (selection and replacement)
|
||||
#include <do/make_algo_scalar.h>
|
||||
#include <make_algo_scalar.h>
|
||||
eoAlgo<eoMyStruct<double> >& make_algo_scalar(eoParser& _parser, eoState& _state, eoEvalFunc<eoMyStruct<double> >& _eval, eoContinue<eoMyStruct<double> >& _continue, eoGenOp<eoMyStruct<double> >& _op)
|
||||
{
|
||||
return do_make_algo_scalar(_parser, _state, _eval, _continue, _op);
|
||||
|
|
@ -114,9 +114,9 @@ eoAlgo<eoMyStruct<eoMinimizingFitness> >& make_algo_scalar(eoParser& _parser, e
|
|||
return do_make_algo_scalar(_parser, _state, _eval, _continue, _op);
|
||||
}
|
||||
|
||||
// simple call to the algo. stays there for consistency reasons
|
||||
// simple call to the algo. stays there for consistency reasons
|
||||
// no template for that one
|
||||
#include <do/make_run.h>
|
||||
#include <make_run.h>
|
||||
void run_ea(eoAlgo<eoMyStruct<double> >& _ga, eoPop<eoMyStruct<double> >& _pop)
|
||||
{
|
||||
do_run(_ga, _pop);
|
||||
|
|
|
|||
Reference in a new issue