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Added a full algorithm to the new EO, with terminators, and things like that

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jmerelo 1999-10-08 11:39:20 +00:00
commit 259420d9ce
9 changed files with 396 additions and 48 deletions
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9
eo/test/Makefile.am
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@ -13,7 +13,7 @@ LDADDS = $(top_builddir)/src/libeo.a
###############################################################################
noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration
noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA
###############################################################################
@ -24,6 +24,13 @@ t_eogeneration_LDADD = $(LDADDS)
###############################################################################
t_eoEasyEA_SOURCES = t-eoEasyEA.cpp
t_eoEasyEA_DEPENDENCIES = $(DEPS)
t_eoEasyEA_LDFLAGS = -lm
t_eoEasyEA_LDADD = $(LDADDS)
###############################################################################
t_eobreeder_SOURCES = t-eobreeder.cpp
t_eobreeder_DEPENDENCIES = $(DEPS)
t_eobreeder_LDFLAGS = -lm

72
eo/test/Makefile.in
View file

@ -87,7 +87,7 @@ LDADDS = $(top_builddir)/src/libeo.a
###############################################################################
noinst_PROGRAMS = t-eogeneration t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery
noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery t-eo2dVector t-eogeneration t-eoEasyEA
###############################################################################
@ -98,6 +98,13 @@ t_eogeneration_LDADD = $(LDADDS)
###############################################################################
t_eoEasyEA_SOURCES = t-eoEasyEA.cpp
t_eoEasyEA_DEPENDENCIES = $(DEPS)
t_eoEasyEA_LDFLAGS = -lm
t_eoEasyEA_LDADD = $(LDADDS)
###############################################################################
t_eobreeder_SOURCES = t-eobreeder.cpp
t_eobreeder_DEPENDENCIES = $(DEPS)
t_eobreeder_LDFLAGS = -lm
@ -146,6 +153,13 @@ t_eolottery_SOURCES = t-eolottery.cpp
t_eolottery_DEPENDENCIES = $(DEPS)
t_eolottery_LDFLAGS = -lm
t_eolottery_LDADD = $(LDADDS)
###############################################################################
t_eo2dVector_SOURCES = t-eo2dVector.cc
t_eo2dVector_DEPENDENCIES = $(DEPS)
t_eo2dVector_LDFLAGS = -lm
t_eo2dVector_LDADD = $(LDADDS)
mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
CONFIG_CLEAN_FILES =
PROGRAMS = $(noinst_PROGRAMS)
@ -155,7 +169,6 @@ DEFS = @DEFS@ -I. -I$(srcdir)
CPPFLAGS = @CPPFLAGS@
LDFLAGS = @LDFLAGS@
LIBS = @LIBS@
t_eogeneration_OBJECTS = t-eogeneration.o
t_eobreeder_OBJECTS = t-eobreeder.o
t_eoinclusion_OBJECTS = t-eoinclusion.o
t_eoinsertion_OBJECTS = t-eoinsertion.o
@ -169,6 +182,9 @@ t_eoproblem_DEPENDENCIES =
t_eobin_OBJECTS = t-eobin.o
t_eobin_LDFLAGS =
t_eolottery_OBJECTS = t-eolottery.o
t_eo2dVector_OBJECTS = t-eo2dVector.o
t_eogeneration_OBJECTS = t-eogeneration.o
t_eoEasyEA_OBJECTS = t-eoEasyEA.o
CXXFLAGS = @CXXFLAGS@
CXXCOMPILE = $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
LTCXXCOMPILE = $(LIBTOOL) --mode=compile $(CXX) $(DEFS) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
@ -181,15 +197,16 @@ DISTFILES = $(DIST_COMMON) $(SOURCES) $(HEADERS) $(TEXINFOS) $(EXTRA_DIST)
TAR = gtar
GZIP_ENV = --best
DEP_FILES = .deps/t-eo.P .deps/t-eobin.P .deps/t-eobreeder.P \
.deps/t-eofitness.P .deps/t-eogeneration.P .deps/t-eoinclusion.P \
.deps/t-eoinsertion.P .deps/t-eolottery.P .deps/t-eoproblem.P
SOURCES = $(t_eogeneration_SOURCES) $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES)
OBJECTS = $(t_eogeneration_OBJECTS) $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS)
DEP_FILES = .deps/t-eo.P .deps/t-eo2dVector.P .deps/t-eoEasyEA.P \
.deps/t-eobin.P .deps/t-eobreeder.P .deps/t-eofitness.P \
.deps/t-eogeneration.P .deps/t-eoinclusion.P .deps/t-eoinsertion.P \
.deps/t-eolottery.P .deps/t-eoproblem.P
SOURCES = $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES) $(t_eo2dVector_SOURCES) $(t_eogeneration_SOURCES) $(t_eoEasyEA_SOURCES)
OBJECTS = $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS) $(t_eo2dVector_OBJECTS) $(t_eogeneration_OBJECTS) $(t_eoEasyEA_OBJECTS)
all: all-redirect
.SUFFIXES:
.SUFFIXES: .S .c .cpp .lo .o .s
.SUFFIXES: .S .c .cc .cpp .lo .o .s
$(srcdir)/Makefile.in: @MAINTAINER_MODE_TRUE@ Makefile.am $(top_srcdir)/configure.in $(ACLOCAL_M4)
cd $(top_srcdir) && $(AUTOMAKE) --gnu test/Makefile
@ -239,10 +256,6 @@ distclean-libtool:
maintainer-clean-libtool:
t-eogeneration: $(t_eogeneration_OBJECTS) $(t_eogeneration_DEPENDENCIES)
@rm -f t-eogeneration
$(CXXLINK) $(t_eogeneration_LDFLAGS) $(t_eogeneration_OBJECTS) $(t_eogeneration_LDADD) $(LIBS)
t-eobreeder: $(t_eobreeder_OBJECTS) $(t_eobreeder_DEPENDENCIES)
@rm -f t-eobreeder
$(CXXLINK) $(t_eobreeder_LDFLAGS) $(t_eobreeder_OBJECTS) $(t_eobreeder_LDADD) $(LIBS)
@ -274,6 +287,22 @@ t-eobin: $(t_eobin_OBJECTS) $(t_eobin_DEPENDENCIES)
t-eolottery: $(t_eolottery_OBJECTS) $(t_eolottery_DEPENDENCIES)
@rm -f t-eolottery
$(CXXLINK) $(t_eolottery_LDFLAGS) $(t_eolottery_OBJECTS) $(t_eolottery_LDADD) $(LIBS)
t-eo2dVector: $(t_eo2dVector_OBJECTS) $(t_eo2dVector_DEPENDENCIES)
@rm -f t-eo2dVector
$(CXXLINK) $(t_eo2dVector_LDFLAGS) $(t_eo2dVector_OBJECTS) $(t_eo2dVector_LDADD) $(LIBS)
t-eogeneration: $(t_eogeneration_OBJECTS) $(t_eogeneration_DEPENDENCIES)
@rm -f t-eogeneration
$(CXXLINK) $(t_eogeneration_LDFLAGS) $(t_eogeneration_OBJECTS) $(t_eogeneration_LDADD) $(LIBS)
t-eoEasyEA: $(t_eoEasyEA_OBJECTS) $(t_eoEasyEA_DEPENDENCIES)
@rm -f t-eoEasyEA
$(CXXLINK) $(t_eoEasyEA_LDFLAGS) $(t_eoEasyEA_OBJECTS) $(t_eoEasyEA_LDADD) $(LIBS)
.cc.o:
$(CXXCOMPILE) -c $<
.cc.lo:
$(LTCXXCOMPILE) -c $<
.cpp.o:
$(CXXCOMPILE) -c $<
.cpp.lo:
@ -361,6 +390,25 @@ maintainer-clean-depend:
>> .deps/$(*F).P; \
rm -f .deps/$(*F).pp
%.o: %.cc
@echo '$(CXXCOMPILE) -c $<'; \
$(CXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
@-cp .deps/$(*F).pp .deps/$(*F).P; \
tr ' ' '\012' < .deps/$(*F).pp \
| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
>> .deps/$(*F).P; \
rm .deps/$(*F).pp
%.lo: %.cc
@echo '$(LTCXXCOMPILE) -c $<'; \
$(LTCXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<
@-sed -e 's/^\([^:]*\)\.o[ ]*:/\1.lo \1.o :/' \
< .deps/$(*F).pp > .deps/$(*F).P; \
tr ' ' '\012' < .deps/$(*F).pp \
| sed -e 's/^\\$$//' -e '/^$$/ d' -e '/:$$/ d' -e 's/$$/ :/' \
>> .deps/$(*F).P; \
rm -f .deps/$(*F).pp
%.o: %.cpp
@echo '$(CXXCOMPILE) -c $<'; \
$(CXXCOMPILE) -Wp,-MD,.deps/$(*F).pp -c $<

81
eo/test/t-eoEasyEA.cpp Normal file
View file

@ -0,0 +1,81 @@
//-----------------------------------------------------------------------------
// t-eoEasyEA.cpp
//-----------------------------------------------------------------------------
// to avoid long name warnings
#pragma warning(disable:4786)
#include <eo>
#include "binary_value.h"
//-----------------------------------------------------------------------------
typedef eoBin<float> Chrom;
//-----------------------------------------------------------------------------
main()
{
const unsigned POP_SIZE = 8, CHROM_SIZE = 16;
unsigned i;
eoUniform<Chrom::Type> uniform(false, true);
eoBinRandom<Chrom> random;
eoPop<Chrom> pop;
for (i = 0; i < POP_SIZE; ++i)
{
Chrom chrom(CHROM_SIZE);
random(chrom);
binary_value(chrom);
pop.push_back(chrom);
}
cout << "population:" << endl;
for (i = 0; i < pop.size(); ++i)
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
// selection
eoLottery<Chrom> lottery;
// breeder
eoBinBitFlip<Chrom> bitflip;
eoBinCrossover<Chrom> xover;
eoProportionalOpSel<Chrom> propSel;
eoBreeder<Chrom> breeder( propSel );
propSel.addOp(bitflip, 0.25);
propSel.addOp(xover, 0.75);
// replacement
eoInclusion<Chrom> inclusion;
// Evaluation
eoEvalFuncPtr<Chrom> eval( binary_value );
// Terminators
eoFitTerm<Chrom> term( pow(2.0, CHROM_SIZE), 1 );
// GA generation
eoEasyEA<Chrom> ea(lottery, breeder, inclusion, eval, term);
// evolution
try
{
ea(pop);
}
catch (exception& e)
{
cout << "exception: " << e.what() << endl;;
exit(EXIT_FAILURE);
}
cout << "pop" << endl;
for (i = 0; i < pop.size(); ++i)
cout << "\t" << pop[i] << " " << pop[i].fitness() << endl;
return 0;
}
//-----------------------------------------------------------------------------