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testing and debugging eoGeneration

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This commit is contained in:
gustavo 1999-09-28 11:56:21 +00:00
commit 1247f801fb
7 changed files with 156 additions and 149 deletions
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5
eo/src/eo
View file

@ -60,11 +60,12 @@
#include <eoBitOp.h> #include <eoBitOp.h>
#include <eoLottery.h> #include <eoLottery.h>
#include <eoBreeder.h> #include <eoBreeder.h>
#include <eoInsertion.h> #include <eoInsertion.h>
#include <eoInclusion.h> #include <eoInclusion.h>
#include <eoGeneration.h>
#include <eoProportionalOpSel.h>
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
// to be continued ... // to be continued ...

21
eo/src/eoGeneration.h
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@ -18,19 +18,20 @@ template<class Chrom> class eoGeneration
{ {
public: public:
/// Constructor. /// Constructor.
eoGeneration(eoSelect& _select, eoGeneration(eoSelect<Chrom>& _select,
eoTranform& _transform, eoTransform<Chrom>& _transform,
eoMerge& _replace): eoMerge<Chrom>& _replace):
select(_select), transform(_transform), replace(_replace) {} select(_select), transform(_transform), replace(_replace) {}
/// apply one generation of evolution to the population /// Apply one generation of evolution to the population.
void operator()(eoPop& pop) template<class Evaluator> void operator()(eoPop<Chrom>& pop,
Evaluator evaluator)
{ {
eoPop breeders; eoPop<Chrom> breeders;
select(pop, breeders); select(pop, breeders);
transform(breeders); transform(breeders);
for_each(pop.begin(), pop.end(), Chrom::Fitness); for_each(breeders.begin(), breeders.end(), evaluator);
replace(breeders, pop); replace(breeders, pop);
} }
@ -38,9 +39,9 @@ template<class Chrom> class eoGeneration
string className() const { return "eoGeneration"; } string className() const { return "eoGeneration"; }
private: private:
eoSelect& select; eoSelect<Chrom>& select;
eoTranform& transform; eoTransform<Chrom>& transform;
eoMerge& replace; eoMerge<Chrom>& replace;
}; };
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------

3
eo/src/eoInsertion.h
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@ -7,7 +7,8 @@
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
#include <eoMerge.h> #include <eoPop.h> // eoPop
#include <eoPopOps.h> // eoMerge
/****************************************************************************** /******************************************************************************
* eoInsertion: A replacement algorithm. * eoInsertion: A replacement algorithm.

57
eo/src/eoMerge.h
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@ -1,57 +0,0 @@
//-----------------------------------------------------------------------------
// eoMerge.h
//-----------------------------------------------------------------------------
#ifndef eoMerge_h
#define eoMerge_h
//-----------------------------------------------------------------------------
#include <eoPop.h> // eoPop
//-----------------------------------------------------------------------------
/** eoMerge involves three populations, that can be merged and transformed to
give a third
*/
template<class EOT>
class eoMerge: public eoObject{
public:
/// (Default) Constructor.
eoMerge(const float& _rate = 1.0): rep_rate(_rate) {}
/// Dtor
virtual ~eoMerge() {}
/** Pure virtual transformation function. Extracts something from breeders
* and transfers it to the pop
* @param breeders Tranformed individuals.
* @param pop The original population at the begining, the result at the end
*/
virtual void operator () ( eoPop<EOT>& breeders, eoPop<EOT>& pop ) = 0;
/** @name Methods from eoObject */
//@{
/** readFrom and printOn are not overriden
*/
/** Inherited from eoObject. Returns the class name.
@see eoObject
*/
string className() const {return "eoMerge";};
//@}
/// Return the rate to be selected from the original population
float rate() const { return rep_rate; }
/// Set the rate to be obtained after replacement.
/// @param _rate The rate.
void rate(const float& _rate) { rep_rate = _rate; }
private:
float rep_rate;
};
//-----------------------------------------------------------------------------
#endif eoMerge_h

188
eo/src/eoPopOps.h
View file

@ -1,28 +1,28 @@
// eoPopOps.h // eoPopOps.h
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- // -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
// eo1d.h // eo1d.h
// (c) GeNeura Team, 1998 // (c) GeNeura Team, 1998
/* /*
This library is free software; you can redistribute it and/or This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version. version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful, This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details. Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es Contact: todos@geneura.ugr.es, http://geneura.ugr.es
*/ */
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
#ifndef _EOPOPOPS_H #ifndef _EOPOPOPS_H
#define _EOPOPOPS_H #define _EOPOPOPS_H
@ -31,71 +31,113 @@ using namespace std;
/** /**
@author Geneura Team @author Geneura Team
@version 0.0 @version 0.0
*/
//-----------------------------------------------------------------------------
#include <eoPop.h>
//-----------------------------------------------------------------------------
/** eoTransform is a class that transforms or does something on a population.
*/ */
//-----------------------------------------------------------------------------
#include <eoPop.h>
//-----------------------------------------------------------------------------
/** eoTransform is a class that transforms or does something on a population.
*/
template<class EOT> template<class EOT>
class eoTransform: public eoObject{ class eoTransform: public eoObject{
public: public:
/** ctor */ /** ctor */
eoTransform() {}; eoTransform() {};
/// Dtor
virtual ~eoTransform(){};
/// Pure virtual transformation function. Does something on the population
virtual void operator () ( eoPop<EOT>& _pop ) = 0;
/** @name Methods from eoObject */ /// Dtor
//@{ virtual ~eoTransform(){};
/// Pure virtual transformation function. Does something on the population
virtual void operator () ( eoPop<EOT>& _pop ) = 0;
/** @name Methods from eoObject */
//@{
/** readFrom and printOn are not overriden /** readFrom and printOn are not overriden
*/ */
/** Inherited from eoObject. Returns the class name. /** Inherited from eoObject. Returns the class name.
@see eoObject @see eoObject
*/ */
string className() const {return "eoTransform";}; string className() const {return "eoTransform";};
//@} //@}
}; };
/** eoSelect usually takes elements from one population, with or without //-----------------------------------------------------------------------------
transformation, and transfers them to the other population
*/ /** eoSelect usually takes elements from one population, with or without transformation, and transfers them to the other population */
template<class EOT> template<class EOT>
class eoSelect: public eoObject{ class eoSelect: public eoObject{
public: public:
/** ctor /** ctor
*/ */
eoSelect() {}; eoSelect() {};
/// Dtor /// Dtor
virtual ~eoSelect(){}; virtual ~eoSelect(){};
/** Pure virtual transformation function. Extracts something from the parents, /** Pure virtual transformation function. Extracts something from the parents,
and transfers it to the siblings and transfers it to the siblings
@param _parents the initial generation. Will be kept constant @param _parents the initial generation. Will be kept constant
@param _siblings the created offspring. Will be usually an empty population @param _siblings the created offspring. Will be usually an empty population
*/ */
virtual void operator () ( const eoPop<EOT>& _parents, eoPop<EOT>& _siblings ) const = 0; virtual void operator () ( const eoPop<EOT>& _parents, eoPop<EOT>& _siblings ) const = 0;
/** @name Methods from eoObject */ /** @name Methods from eoObject */
//@{ //@{
/** readFrom and printOn are not overriden /** readFrom and printOn are not overriden
*/ */
/** Inherited from eoObject. Returns the class name. /** Inherited from eoObject. Returns the class name.
@see eoObject @see eoObject
*/ */
string className() const {return "eoSelect";}; string className() const {return "eoSelect";};
//@} //@}
}; };
/** eoMerge involves three populations, that can be merged and transformed to
give a third
*/
template<class EOT>
class eoMerge: public eoObject{
public:
/// (Default) Constructor.
eoMerge(const float& _rate = 1.0): rep_rate(_rate) {}
/// Dtor
virtual ~eoMerge() {}
/** Pure virtual transformation function. Extracts something from breeders
* and transfers it to the pop
* @param breeders Tranformed individuals.
* @param pop The original population at the begining, the result at the end
*/
virtual void operator () ( eoPop<EOT>& breeders, eoPop<EOT>& pop ) = 0;
/** @name Methods from eoObject */
//@{
/** readFrom and printOn are not overriden
*/
/** Inherited from eoObject. Returns the class name.
@see eoObject
*/
string className() const {return "eoMerge";};
//@}
/// Return the rate to be selected from the original population
float rate() const { return rep_rate; }
/// Set the rate to be obtained after replacement.
/// @param _rate The rate.
void rate(const float& _rate) { rep_rate = _rate; }
private:
float rep_rate;
};
//-----------------------------------------------------------------------------
#endif #endif

9
eo/test/Makefile.am
View file

@ -13,7 +13,14 @@ LDADDS = $(top_builddir)/src/libeo.a
############################################################################### ###############################################################################
noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery noinst_PROGRAMS = t-eogeneration t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery
###############################################################################
t_eogeneration_SOURCES = t-eogeneration.cpp
t_eogeneration_DEPENDENCIES = $(DEPS)
t_eogeneration_LDFLAGS = -lm
t_eogeneration_LDADD = $(LDADDS)
############################################################################### ###############################################################################

22
eo/test/Makefile.in
View file

@ -87,7 +87,14 @@ LDADDS = $(top_builddir)/src/libeo.a
############################################################################### ###############################################################################
noinst_PROGRAMS = t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery noinst_PROGRAMS = t-eogeneration t-eobreeder t-eoinclusion t-eoinsertion t-eo t-eofitness t-eoproblem t-eobin t-eolottery
###############################################################################
t_eogeneration_SOURCES = t-eogeneration.cpp
t_eogeneration_DEPENDENCIES = $(DEPS)
t_eogeneration_LDFLAGS = -lm
t_eogeneration_LDADD = $(LDADDS)
############################################################################### ###############################################################################
@ -148,6 +155,7 @@ DEFS = @DEFS@ -I. -I$(srcdir)
CPPFLAGS = @CPPFLAGS@ CPPFLAGS = @CPPFLAGS@
LDFLAGS = @LDFLAGS@ LDFLAGS = @LDFLAGS@
LIBS = @LIBS@ LIBS = @LIBS@
t_eogeneration_OBJECTS = t-eogeneration.o
t_eobreeder_OBJECTS = t-eobreeder.o t_eobreeder_OBJECTS = t-eobreeder.o
t_eoinclusion_OBJECTS = t-eoinclusion.o t_eoinclusion_OBJECTS = t-eoinclusion.o
t_eoinsertion_OBJECTS = t-eoinsertion.o t_eoinsertion_OBJECTS = t-eoinsertion.o
@ -174,10 +182,10 @@ DISTFILES = $(DIST_COMMON) $(SOURCES) $(HEADERS) $(TEXINFOS) $(EXTRA_DIST)
TAR = gtar TAR = gtar
GZIP_ENV = --best GZIP_ENV = --best
DEP_FILES = .deps/t-eo.P .deps/t-eobin.P .deps/t-eobreeder.P \ DEP_FILES = .deps/t-eo.P .deps/t-eobin.P .deps/t-eobreeder.P \
.deps/t-eofitness.P .deps/t-eoinclusion.P .deps/t-eoinsertion.P \ .deps/t-eofitness.P .deps/t-eogeneration.P .deps/t-eoinclusion.P \
.deps/t-eolottery.P .deps/t-eoproblem.P .deps/t-eoinsertion.P .deps/t-eolottery.P .deps/t-eoproblem.P
SOURCES = $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES) SOURCES = $(t_eogeneration_SOURCES) $(t_eobreeder_SOURCES) $(t_eoinclusion_SOURCES) $(t_eoinsertion_SOURCES) $(t_eo_SOURCES) $(t_eofitness_SOURCES) $(t_eoproblem_SOURCES) $(t_eobin_SOURCES) $(t_eolottery_SOURCES)
OBJECTS = $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS) OBJECTS = $(t_eogeneration_OBJECTS) $(t_eobreeder_OBJECTS) $(t_eoinclusion_OBJECTS) $(t_eoinsertion_OBJECTS) $(t_eo_OBJECTS) $(t_eofitness_OBJECTS) $(t_eoproblem_OBJECTS) $(t_eobin_OBJECTS) $(t_eolottery_OBJECTS)
all: all-redirect all: all-redirect
.SUFFIXES: .SUFFIXES:
@ -231,6 +239,10 @@ distclean-libtool:
maintainer-clean-libtool: maintainer-clean-libtool:
t-eogeneration: $(t_eogeneration_OBJECTS) $(t_eogeneration_DEPENDENCIES)
@rm -f t-eogeneration
$(CXXLINK) $(t_eogeneration_LDFLAGS) $(t_eogeneration_OBJECTS) $(t_eogeneration_LDADD) $(LIBS)
t-eobreeder: $(t_eobreeder_OBJECTS) $(t_eobreeder_DEPENDENCIES) t-eobreeder: $(t_eobreeder_OBJECTS) $(t_eobreeder_DEPENDENCIES)
@rm -f t-eobreeder @rm -f t-eobreeder
$(CXXLINK) $(t_eobreeder_LDFLAGS) $(t_eobreeder_OBJECTS) $(t_eobreeder_LDADD) $(LIBS) $(CXXLINK) $(t_eobreeder_LDFLAGS) $(t_eobreeder_OBJECTS) $(t_eobreeder_LDADD) $(LIBS)