Moved out of the 'obsolete' directory a couple of honest classes, which didn't harm anybody; activated also in Makefile.am the program that tested them
This commit is contained in:
jmerelo
parent
07bc61e694
commit
0dd3e27e4e
6 changed files with 388 additions and 366 deletions
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@ -1,350 +1,350 @@
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#ifdef _MSC_VER
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#pragma warning(disable:4786)
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#endif
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#include <stdexcept>
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#include <algorithm>
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#include <fstream>
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#include <iomanip>
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#include <utils/compatibility.h>
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#include <utils/eoParser.h>
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using namespace std;
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void eoWarning(std::string str)
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{
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cout << str << '\n';
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}
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std::ostream& printSectionHeader(std::ostream& os, std::string section)
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{
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if (section == "")
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section = "General";
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os << '\n' << setw(10) << "###### " << setw(20) << section << setw(10) << " ######\n";
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return os;
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}
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eoParameterLoader::~eoParameterLoader()
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{
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for (unsigned i = 0; i < ownedParams.size(); ++i)
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{
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delete ownedParams[i];
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}
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}
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eoParser::eoParser ( int _argc, char **_argv , string _programDescription, string _lFileParamName, char _shortHand) :
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programName( _argv[0]),
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programDescription( _programDescription),
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needHelp(false, "help", "Prints this message", 'h')
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{
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// need to process the param file first
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// if we want command-line to have highest priority
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unsigned i;
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for (i = 1; i < _argc; ++i)
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{
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if (_argv[i][0] == '@')
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{ // read response file
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char *pts = _argv[i]+1; // yes a char*, sorry :-)
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ifstream ifs (pts);
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ifs.peek(); // check if it exists
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if (!ifs)
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{
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string msg = (string)("Could not open response file: ") + pts;
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throw runtime_error(msg);
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}
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// read - will be overwritten by command-line
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readFrom(ifs);
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break; // stop reading command line args for '@'
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}
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}
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// now read arguments on command-line
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strstream stream;
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for (i = 1; i < _argc; ++i)
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{
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stream << _argv[i] << '\n';
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}
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readFrom(stream);
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processParam(needHelp);
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}
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void eoParser::processParam(eoParam& param, std::string section)
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{
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doRegisterParam(param); // plainly register it
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params.insert(make_pair(section, ¶m));
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}
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void eoParser::doRegisterParam(eoParam& param) const
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{
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if (param.required() && !isItThere(param))
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{
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string msg = "Required parameter: " + param.longName() + " missing";
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messages.push_back(msg);
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}
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pair<bool, string> value = getValue(param);
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if (value.first)
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{
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param.setValue(value.second);
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}
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}
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pair<bool, string> eoParser::getValue(eoParam& _param) const
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{
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pair<bool, string> result(false, "");
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if (_param.shortName() != 0)
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{
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map<char, string>::const_iterator it = shortNameMap.find(_param.shortName());
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if (it != shortNameMap.end())
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{
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result.second = it->second;
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result.first = true;
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return result;
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}
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}
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map<string, string>::const_iterator it = longNameMap.find(_param.longName());
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if (it != longNameMap.end())
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{
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result.second = it->second;
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result.first = true;
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return result;
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}
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// else (TODO: check environment, just long names)
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return result;
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}
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void eoParser::updateParameters() const
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{
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typedef MultiMapType::const_iterator It;
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for (It p = params.begin(); p != params.end(); ++p)
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{
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doRegisterParam(*p->second);
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}
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}
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void eoParser::readFrom(istream& is)
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{
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string str;
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while (is >> str)
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{
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if (str[0] == '#')
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{ // skip the rest of the line
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string tempStr;
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getline(is, tempStr);
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}
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if (str[0] == '-')
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{
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if (str.size() < 2)
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{
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eoWarning("Missing parameter");
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needHelp.value() = true;
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return;
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}
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if (str[1] == '-') // two consecutive dashes
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{
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string::iterator equalLocation = find(str.begin() + 2, str.end(), '=');
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string value;
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if (equalLocation == str.end())
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{ // TODO: it should be the next string
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value = "";
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}
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else
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{
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value = string(equalLocation + 1, str.end());
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}
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string name(str.begin() + 2, equalLocation);
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longNameMap[name] = value;
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}
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else // it should be a char
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{
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string value = "1"; // flags do not need a special
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if (str.size() >= 2)
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{
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if (str[2] == '=')
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{
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if (str.size() >= 3)
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value = string(str.begin() + 3, str.end());
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}
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else
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{
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value = string(str.begin() + 2, str.end());
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}
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}
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shortNameMap[str[1]] = value;
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}
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}
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}
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updateParameters();
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}
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void eoParser::printOn(ostream& os) const
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{
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typedef MultiMapType::const_iterator It;
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It p = params.begin();
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std::string section = p->first;
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printSectionHeader(os, section);
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//print every param with its value
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for (; p != params.end(); ++p)
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{
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std::string newSection = p->first;
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if (newSection != section)
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{
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section = newSection;
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printSectionHeader(os, section);
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}
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eoParam* param = p->second;
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string str = "--" + param->longName() + "=" + param->getValue();
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os.setf(ios_base::left, ios_base::adjustfield);
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os << setw(40) << str;
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os << setw(0) << " # ";
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if (param->shortName())
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os << '-' << param->shortName() << " : ";
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os << param->description();
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if (param->required())
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{
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os << " REQUIRED ";
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}
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os << '\n';
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}
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}
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void eoParser::printHelp(ostream& os)
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{
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if (needHelp.value() == false && !messages.empty())
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{
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std::copy(messages.begin(), messages.end(), ostream_iterator<string>(os, "\n"));
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messages.clear();
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return;
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}
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// print program name and description
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os << this->programName <<": "<< programDescription << "\n\n";
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// print the usage when calling the program from the command line
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os << "Usage: "<< programName<<" [Options]\n";
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// only short usage!
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os << "Options of the form \"-f[=Value]\" or \"--Name[=value]\"" << endl;
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os << "Where:"<<endl;
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typedef MultiMapType::const_iterator It;
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It p = params.begin();
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std::string section = p->first;
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printSectionHeader(os, section);
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//print every param with its value
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for (; p != params.end(); ++p)
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{
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std::string newSection = p->first;
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if (newSection != section)
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{
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section = newSection;
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printSectionHeader(os, section);
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}
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if (p->second->shortName())
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os << "-" << p->second->shortName() << ", ";
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os << "--" <<p->second->longName() <<":\t"
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<< p->second->description() ;
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os << "\n" << setw(20) << ( (p->second->required())?"Required":"Optional" );
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os <<". By default: "<<p->second->defValue() << '\n';
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} // for p
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os << "\n@param_file \t defines a file where the parameters are stored\n";
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os << '\n';
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}
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bool eoParser::userNeedsHelp(void)
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{
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/*
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check whether there are long or short names entered
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without a corresponding parameter
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*/
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for (LongNameMapType::const_iterator lIt = longNameMap.begin(); lIt != longNameMap.end(); ++lIt)
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{
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string entry = lIt->first;
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MultiMapType::const_iterator it;
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for (it = params.begin(); it != params.end(); ++it)
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{
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if (entry == it->second->longName())
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{
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break;
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}
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}
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if (it == params.end())
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{
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string msg = "Unknown parameter: --" + entry + " entered, type -h or --help to see available parameters";
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messages.push_back(msg);
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}
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}
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for (ShortNameMapType::const_iterator sIt = shortNameMap.begin(); sIt != shortNameMap.end(); ++sIt)
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{
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char entry = sIt->first;
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MultiMapType::const_iterator it;
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for (it = params.begin(); it != params.end(); ++it)
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{
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if (entry == it->second->shortName())
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{
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break;
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}
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}
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if (it == params.end())
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{
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string entryString(1, entry);
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string msg = "Unknown parameter: -" + entryString + " entered, type -h or --help to see available parameters";
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messages.push_back(msg);
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}
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}
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return needHelp.value() || !messages.empty();
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}
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#ifdef _MSC_VER
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#pragma warning(disable:4786)
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#endif
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#include <stdexcept>
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#include <algorithm>
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#include <fstream>
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#include <iomanip>
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#include <utils/compatibility.h>
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#include <utils/eoParser.h>
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using namespace std;
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void eoWarning(std::string str)
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{
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cout << str << '\n';
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}
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std::ostream& printSectionHeader(std::ostream& os, std::string section)
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{
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if (section == "")
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section = "General";
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os << '\n' << setw(10) << "###### " << setw(20) << section << setw(10) << " ######\n";
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return os;
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}
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eoParameterLoader::~eoParameterLoader()
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{
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for (unsigned i = 0; i < ownedParams.size(); ++i)
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{
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delete ownedParams[i];
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}
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}
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eoParser::eoParser ( unsigned _argc, char **_argv , string _programDescription, string _lFileParamName, char _shortHand) :
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programName( _argv[0]),
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programDescription( _programDescription),
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needHelp(false, "help", "Prints this message", 'h')
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{
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// need to process the param file first
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// if we want command-line to have highest priority
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unsigned i;
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for (i = 1; i < _argc; ++i)
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{
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if (_argv[i][0] == '@')
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{ // read response file
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char *pts = _argv[i]+1; // yes a char*, sorry :-)
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ifstream ifs (pts);
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ifs.peek(); // check if it exists
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if (!ifs)
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{
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string msg = (string)("Could not open response file: ") + pts;
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throw runtime_error(msg);
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}
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// read - will be overwritten by command-line
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readFrom(ifs);
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break; // stop reading command line args for '@'
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}
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}
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// now read arguments on command-line
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strstream stream;
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for (i = 1; i < _argc; ++i)
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{
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stream << _argv[i] << '\n';
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}
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readFrom(stream);
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processParam(needHelp);
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}
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void eoParser::processParam(eoParam& param, std::string section)
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{
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doRegisterParam(param); // plainly register it
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params.insert(make_pair(section, ¶m));
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}
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void eoParser::doRegisterParam(eoParam& param) const
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{
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if (param.required() && !isItThere(param))
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{
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string msg = "Required parameter: " + param.longName() + " missing";
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messages.push_back(msg);
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}
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pair<bool, string> value = getValue(param);
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if (value.first)
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{
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param.setValue(value.second);
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}
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}
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pair<bool, string> eoParser::getValue(eoParam& _param) const
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{
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pair<bool, string> result(false, "");
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if (_param.shortName() != 0)
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{
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map<char, string>::const_iterator it = shortNameMap.find(_param.shortName());
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if (it != shortNameMap.end())
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{
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result.second = it->second;
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result.first = true;
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return result;
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}
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}
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map<string, string>::const_iterator it = longNameMap.find(_param.longName());
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if (it != longNameMap.end())
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{
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result.second = it->second;
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result.first = true;
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return result;
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}
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// else (TODO: check environment, just long names)
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return result;
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}
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void eoParser::updateParameters() const
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{
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typedef MultiMapType::const_iterator It;
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for (It p = params.begin(); p != params.end(); ++p)
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{
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doRegisterParam(*p->second);
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}
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}
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void eoParser::readFrom(istream& is)
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{
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string str;
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while (is >> str)
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{
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|
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if (str[0] == '#')
|
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{ // skip the rest of the line
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string tempStr;
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getline(is, tempStr);
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}
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if (str[0] == '-')
|
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{
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if (str.size() < 2)
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{
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eoWarning("Missing parameter");
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needHelp.value() = true;
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return;
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}
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if (str[1] == '-') // two consecutive dashes
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{
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string::iterator equalLocation = find(str.begin() + 2, str.end(), '=');
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string value;
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if (equalLocation == str.end())
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{ // TODO: it should be the next string
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value = "";
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}
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else
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{
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value = string(equalLocation + 1, str.end());
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}
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string name(str.begin() + 2, equalLocation);
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longNameMap[name] = value;
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}
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else // it should be a char
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{
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string value = "1"; // flags do not need a special
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|
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if (str.size() >= 2)
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{
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if (str[2] == '=')
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{
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if (str.size() >= 3)
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value = string(str.begin() + 3, str.end());
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}
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else
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{
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value = string(str.begin() + 2, str.end());
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}
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}
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shortNameMap[str[1]] = value;
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}
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}
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}
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updateParameters();
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}
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void eoParser::printOn(ostream& os) const
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{
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typedef MultiMapType::const_iterator It;
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|
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It p = params.begin();
|
||||
|
||||
std::string section = p->first;
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||||
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printSectionHeader(os, section);
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||||
//print every param with its value
|
||||
for (; p != params.end(); ++p)
|
||||
{
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||||
std::string newSection = p->first;
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||||
|
||||
if (newSection != section)
|
||||
{
|
||||
section = newSection;
|
||||
printSectionHeader(os, section);
|
||||
}
|
||||
|
||||
eoParam* param = p->second;
|
||||
|
||||
string str = "--" + param->longName() + "=" + param->getValue();
|
||||
|
||||
os.setf(ios_base::left, ios_base::adjustfield);
|
||||
os << setw(40) << str;
|
||||
|
||||
os << setw(0) << " # ";
|
||||
if (param->shortName())
|
||||
os << '-' << param->shortName() << " : ";
|
||||
os << param->description();
|
||||
|
||||
if (param->required())
|
||||
{
|
||||
os << " REQUIRED ";
|
||||
}
|
||||
|
||||
os << '\n';
|
||||
}
|
||||
}
|
||||
|
||||
void eoParser::printHelp(ostream& os)
|
||||
{
|
||||
if (needHelp.value() == false && !messages.empty())
|
||||
{
|
||||
std::copy(messages.begin(), messages.end(), ostream_iterator<string>(os, "\n"));
|
||||
messages.clear();
|
||||
return;
|
||||
}
|
||||
|
||||
// print program name and description
|
||||
os << this->programName <<": "<< programDescription << "\n\n";
|
||||
|
||||
// print the usage when calling the program from the command line
|
||||
os << "Usage: "<< programName<<" [Options]\n";
|
||||
// only short usage!
|
||||
os << "Options of the form \"-f[=Value]\" or \"--Name[=value]\"" << endl;
|
||||
|
||||
os << "Where:"<<endl;
|
||||
|
||||
typedef MultiMapType::const_iterator It;
|
||||
|
||||
It p = params.begin();
|
||||
|
||||
std::string section = p->first;
|
||||
|
||||
printSectionHeader(os, section);
|
||||
|
||||
//print every param with its value
|
||||
for (; p != params.end(); ++p)
|
||||
{
|
||||
std::string newSection = p->first;
|
||||
|
||||
if (newSection != section)
|
||||
{
|
||||
section = newSection;
|
||||
printSectionHeader(os, section);
|
||||
}
|
||||
|
||||
if (p->second->shortName())
|
||||
os << "-" << p->second->shortName() << ", ";
|
||||
|
||||
os << "--" <<p->second->longName() <<":\t"
|
||||
<< p->second->description() ;
|
||||
|
||||
os << "\n" << setw(20) << ( (p->second->required())?"Required":"Optional" );
|
||||
os <<". By default: "<<p->second->defValue() << '\n';
|
||||
} // for p
|
||||
|
||||
os << "\n@param_file \t defines a file where the parameters are stored\n";
|
||||
os << '\n';
|
||||
|
||||
}
|
||||
|
||||
bool eoParser::userNeedsHelp(void)
|
||||
{
|
||||
/*
|
||||
check whether there are long or short names entered
|
||||
without a corresponding parameter
|
||||
*/
|
||||
|
||||
for (LongNameMapType::const_iterator lIt = longNameMap.begin(); lIt != longNameMap.end(); ++lIt)
|
||||
{
|
||||
string entry = lIt->first;
|
||||
|
||||
MultiMapType::const_iterator it;
|
||||
|
||||
for (it = params.begin(); it != params.end(); ++it)
|
||||
{
|
||||
if (entry == it->second->longName())
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
if (it == params.end())
|
||||
{
|
||||
string msg = "Unknown parameter: --" + entry + " entered, type -h or --help to see available parameters";
|
||||
messages.push_back(msg);
|
||||
}
|
||||
}
|
||||
|
||||
for (ShortNameMapType::const_iterator sIt = shortNameMap.begin(); sIt != shortNameMap.end(); ++sIt)
|
||||
{
|
||||
char entry = sIt->first;
|
||||
|
||||
MultiMapType::const_iterator it;
|
||||
|
||||
for (it = params.begin(); it != params.end(); ++it)
|
||||
{
|
||||
if (entry == it->second->shortName())
|
||||
{
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
if (it == params.end())
|
||||
{
|
||||
string entryString(1, entry);
|
||||
string msg = "Unknown parameter: -" + entryString + " entered, type -h or --help to see available parameters";
|
||||
messages.push_back(msg);
|
||||
}
|
||||
}
|
||||
|
||||
return needHelp.value() || !messages.empty();
|
||||
}
|
||||
|
|
|
|||
|
|
@ -23,7 +23,9 @@
|
|||
mkeijzer@dhi.dk
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
/**
|
||||
CVS Info: $Date: 2001-02-13 22:35:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/utils/eoParser.h,v 1.7 2001-02-13 22:35:07 jmerelo Exp $ $Author: jmerelo $ $Log$
|
||||
*/
|
||||
#ifndef eoParser_h
|
||||
#define eoParser_h
|
||||
|
||||
|
|
@ -111,7 +113,7 @@ public:
|
|||
* @param _lFileParamName Name of the parameter specifying the configuration file (--param-file)
|
||||
* @param _shortHand Single charachter shorthand for specifying the configuration file
|
||||
*/
|
||||
eoParser ( int _argc, char **_argv , string _programDescription = "",
|
||||
eoParser ( unsigned _argc, char **_argv , string _programDescription = "",
|
||||
string _lFileParamName = "param-file", char _shortHand = 'p');
|
||||
|
||||
/**
|
||||
|
|
|
|||
63
eo/src/utils/eoRnd.h
Normal file
63
eo/src/utils/eoRnd.h
Normal file
|
|
@ -0,0 +1,63 @@
|
|||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
-----------------------------------------------------------------------------
|
||||
eoRnd.h
|
||||
(c) GeNeura Team, 1998
|
||||
|
||||
This library is free software; you can redistribute it and/or
|
||||
modify it under the terms of the GNU Lesser General Public
|
||||
License as published by the Free Software Foundation; either
|
||||
version 2 of the License, or (at your option) any later version.
|
||||
|
||||
This library is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
||||
Lesser General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public
|
||||
License along with this library; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
*/
|
||||
//-----------------------------------------------------------------------------
|
||||
/**
|
||||
CVS Info: $Date: 2001-02-13 22:35:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/utils/Attic/eoRnd.h,v 1.1 2001-02-13 22:35:07 jmerelo Exp $ $Author: jmerelo $ $Log$
|
||||
*/
|
||||
#ifndef _EORND_H
|
||||
#define _EORND_H
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <eoObject.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// Class eoRnd
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <stdlib.h> // srand
|
||||
#include <time.h> // time
|
||||
#include <stdexcept> // runtime_error
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <eoPersistent.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
/**
|
||||
* Base class for a family of random 'number' generators. These 'numbers'
|
||||
* can be anything, including full-fledged chromosomes.
|
||||
*/
|
||||
template<class T>
|
||||
class eoRnd
|
||||
{
|
||||
public:
|
||||
|
||||
/** Main function: random generators act as functors, that return random numbers.
|
||||
@return return a random number
|
||||
*/
|
||||
virtual T operator()() = 0;
|
||||
|
||||
};
|
||||
|
||||
#endif
|
||||
104
eo/src/utils/eoUniform.h
Normal file
104
eo/src/utils/eoUniform.h
Normal file
|
|
@ -0,0 +1,104 @@
|
|||
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
|
||||
|
||||
-----------------------------------------------------------------------------
|
||||
eoUniform.h
|
||||
Uniform random number generator;
|
||||
(c) GeNeura Team, 1998
|
||||
|
||||
This library is free software; you can redistribute it and/or
|
||||
modify it under the terms of the GNU Lesser General Public
|
||||
License as published by the Free Software Foundation; either
|
||||
version 2 of the License, or (at your option) any later version.
|
||||
|
||||
This library is distributed in the hope that it will be useful,
|
||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
|
||||
Lesser General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU Lesser General Public
|
||||
License along with this library; if not, write to the Free Software
|
||||
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
|
||||
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
|
||||
*/
|
||||
|
||||
/**
|
||||
CVS Info: $Date: 2001-02-13 22:35:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/utils/Attic/eoUniform.h,v 1.1 2001-02-13 22:35:07 jmerelo Exp $ $Author: jmerelo $ $Log$
|
||||
*/
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#ifndef _EOUNIFORM_H
|
||||
#define _EOUNIFORM_H
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#include <utils/eoRnd.h>
|
||||
#include <utils/eoRNG.h>
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
// Class eoUniform
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
/** Generates uniform random number over the interval [min, max)
|
||||
Uses the global variable rng
|
||||
*/
|
||||
|
||||
using eo::rng;
|
||||
|
||||
template<class T>
|
||||
class eoUniform: public eoRnd<T>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
* Default constructor.
|
||||
* @param _min The minimum value in the interval.
|
||||
* @param _max The maximum value in the interval.
|
||||
*/
|
||||
eoUniform(T _min = 0, T _max = 1)
|
||||
: eoRnd<T>(), min(_min), diff(_max - _min) {}
|
||||
|
||||
/**
|
||||
* copy constructor.
|
||||
* @param _rnd the other rnd
|
||||
*/
|
||||
eoUniform( const eoUniform& _rnd)
|
||||
: eoRnd<T>( _rnd), min(_rnd.min), diff(_rnd.diff) {}
|
||||
|
||||
/** Returns an uniform random number over the interval [min, max)
|
||||
Uses global rng object */
|
||||
virtual T operator()() {
|
||||
return min + T( rng.uniform( diff ) );
|
||||
}
|
||||
|
||||
private:
|
||||
T min;
|
||||
double diff;
|
||||
};
|
||||
|
||||
template<>
|
||||
class eoUniform<bool>: public eoRnd<bool>
|
||||
{
|
||||
public:
|
||||
/**
|
||||
* Default constructor.
|
||||
* @param _min The minimum value in the interval.
|
||||
* @param _max The maximum value in the interval.
|
||||
*/
|
||||
eoUniform(bool _min = false, bool _max = true)
|
||||
: eoRnd<bool>() {}
|
||||
|
||||
/** Returns an uniform random number over the interval [min, max)
|
||||
Uses global rng object */
|
||||
virtual bool operator()() {
|
||||
return rng.flip(0.5);
|
||||
}
|
||||
|
||||
private:
|
||||
bool min;
|
||||
double diff;
|
||||
};
|
||||
|
||||
//-----------------------------------------------------------------------------
|
||||
|
||||
#endif
|
||||
Reference in a new issue