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eoVector is back (eoFixedLength and eoVariableLength are gone)

Browse source 
Also: introducing eoRndGenerators.h for eoRndGenerator derived classes:

  eoNormalGenerator
  eoUniformGenerator
  eoBooleanGenerator
  eoNegExpGenerator

Note the suffix that are added to aid in determining what these classes do
This commit is contained in:
maartenkeijzer 2001-02-17 10:51:31 +00:00
commit 025eb736ee
19 changed files with 222 additions and 350 deletions
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4
eo/app/mastermind/mastermind.h
View file

@ -8,7 +8,7 @@
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
#include <stdlib.h> // exit EXIT_FAILURE #include <stdlib.h> // exit EXIT_FAILURE
#include <eoFixedLength.h> // eoFixedLength #include <eoVector.h> // eoVectorLength
#include <eoOp.h> // eoMonOp eoQuadraticOp #include <eoOp.h> // eoMonOp eoQuadraticOp
#include <eoInit.h> // eoInit #include <eoInit.h> // eoInit
#include <utils/rnd_generators.h> // uniform_generator #include <utils/rnd_generators.h> // uniform_generator
@ -29,7 +29,7 @@ typedef vector<int> genotype;
// Chrom // Chrom
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
typedef eoFixedLength<phenotype, int> Chrom; typedef eoVector<phenotype, int> Chrom;
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
// eoChromEvaluator // eoChromEvaluator

2
eo/src/Makefile.am
View file

@ -11,5 +11,5 @@ lib_LIBRARIES = libeo.a
libeo_a_SOURCES = eoPrintable.cpp eoPersistent.cpp eoFunctorStore.cpp libeo_a_SOURCES = eoPrintable.cpp eoPersistent.cpp eoFunctorStore.cpp
libeoincdir = $(includedir)/eo libeoincdir = $(includedir)/eo
libeoinc_HEADERS = eo EO.h apply.h eoAlgo.h eoBreed.h eoCombinedContinue.h eoContinue.h eoCounter.h eoDetSelect.h eoDetTournamentSelect.h eoEasyEA.h eoEvalFunc.h eoEvalFuncPtr.h eoFactory.h eoFitContinue.h eoFitnessScalingSelect.h eoFixedLength.h eoFunctor.h eoFunctorStore.h eoGenContinue.h eoInvalidateOps.h eoInit.h eoMerge.h eoMergeReduce.h eoObject.h eoOp.h eoOpSelMason.h eoPersistent.h eoPop.h eoPrintable.h eoProportionalCombinedOp.h eoProportionalSelect.h eoRandomSelect.h eoRankingSelect.h eoReduce.h eoReduceMerge.h eoReplacement.h eoSGA.h eoSGATransform.h eoScalarFitness.h eoSelect.h eoSelectFactory.h eoSelectMany.h eoSelectNumber.h eoSelectOne.h eoSelectPerc.h eoSteadyFitContinue.h eoStochTournamentSelect.h eoSurviveAndDie.h eoTransform.h eoVariableLength.h eoVariableLengthCrossover.h eoVariableLengthMutation.h eoPerf2Worth.h eoFitnessScalingSelect.h eoLinearFitScaling.h eoRanking.h es.h ga.h libeoinc_HEADERS = eo EO.h apply.h eoAlgo.h eoBreed.h eoCombinedContinue.h eoContinue.h eoCounter.h eoDetSelect.h eoDetTournamentSelect.h eoEasyEA.h eoEvalFunc.h eoEvalFuncPtr.h eoFactory.h eoFitContinue.h eoFitnessScalingSelect.h eoVector.h eoFunctor.h eoFunctorStore.h eoGenContinue.h eoInvalidateOps.h eoInit.h eoMerge.h eoMergeReduce.h eoObject.h eoOp.h eoOpSelMason.h eoPersistent.h eoPop.h eoPrintable.h eoProportionalCombinedOp.h eoProportionalSelect.h eoRandomSelect.h eoRankingSelect.h eoReduce.h eoReduceMerge.h eoReplacement.h eoSGA.h eoSGATransform.h eoScalarFitness.h eoSelect.h eoSelectFactory.h eoSelectMany.h eoSelectNumber.h eoSelectOne.h eoSelectPerc.h eoSteadyFitContinue.h eoStochTournamentSelect.h eoSurviveAndDie.h eoTransform.h eoVariableLengthCrossover.h eoVariableLengthMutation.h eoPerf2Worth.h eoFitnessScalingSelect.h eoLinearFitScaling.h eoRanking.h es.h ga.h

3
eo/src/eo
View file

@ -58,8 +58,7 @@
#include <apply.h> #include <apply.h>
// eo's // eo's
#include <eoVariableLength.h> #include <eoVector.h>
#include <eoFixedLength.h>
#include <other/eoString.h> #include <other/eoString.h>

4
eo/src/eoPerf2Worth.h
View file

@ -37,12 +37,12 @@ It is an eoStat so
@see eoSelectFromWorth @see eoSelectFromWorth
*/ */
template <class EOT, class WorthT = double> template <class EOT, class WorthT = typename EOT::Fitness>
class eoPerf2Worth : public eoStat<EOT, vector<WorthT> > class eoPerf2Worth : public eoStat<EOT, vector<WorthT> >
{ {
public: public:
eoPerf2Worth():eoStat<EOT, vector<WorthT> >(vector<WorthT>(0), eoPerf2Worth():eoStat<EOT, vector<WorthT> >(vector<WorthT>(0),
"Worthes") {} "Worths") {}
}; };
#endif #endif

5
eo/src/eoScalarFitness.h
View file

@ -33,10 +33,7 @@
* eoScalarFitness<ScalarType, Compare = less<ScalarType> >: * eoScalarFitness<ScalarType, Compare = less<ScalarType> >:
* Wraps a scalar fitness values such as a double or int, with the option of * Wraps a scalar fitness values such as a double or int, with the option of
* maximizing (using less<ScalarType>) or minimizing (using greater<ScalarType>) * maximizing (using less<ScalarType>) or minimizing (using greater<ScalarType>)
*
*
*
*
* It overrides operator<() to use the Compare template argument * It overrides operator<() to use the Compare template argument
* *
* Suitable constructors and assignments and casts are defined to work * Suitable constructors and assignments and casts are defined to work

104
eo/src/eoVariableLength.h
View file

@ -1,104 +0,0 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
//-----------------------------------------------------------------------------
// eoVariableLength.h
// (c) GeNeura Team, 2000 - EEAAX 1999 - Maarten Keijzer 2000
/*
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
Marc.Schoenauer@polytechnique.fr
mak@dhi.dk
*/
//-----------------------------------------------------------------------------
#ifndef _eoVariableLength_h
#define _eoVariableLength_h
#include <vector>
/**
Base class for variable length chromosomes. Derives from EO and vector,
redirects the smaller than operator to EO (fitness based comparison),
and implements the virtual functions printOn() and readFrom()
*/
template <class FitT, class GeneType>
class eoVariableLength : public EO<FitT>, public std::vector<GeneType>
{
public :
typedef GeneType AtomType;
typedef std::vector<GeneType> ContainerType;
// default ctor
eoVariableLength(unsigned size = 0, GeneType value = GeneType()) : EO<FitT>(), std::vector<GeneType>(size, value)
{}
// we can't have a Ctor from a vector, it would create ambiguity
// with the copy Ctor
void value(std::vector<GeneType> _v)
{
resize(_v.size());
copy(_v.begin(), _v.end(), begin());
invalidate();
}
/// printing...
void printOn(ostream& os) const
{
EO<FitT>::printOn(os);
os << ' ';
os << size() << ' ';
std::copy(begin(), end(), ostream_iterator<AtomType>(os, " "));
}
/// reading...
void readFrom(istream& is)
{
EO<FitT>::readFrom(is);
unsigned sz;
is >> sz;
resize(sz);
unsigned i;
for (i = 0; i < sz; ++i)
{
AtomType atom;
is >> atom;
operator[](i) = atom;
}
}
/// to avoid conflicts between EO::operator< and vector<double>::operator<
bool operator<(const eoVariableLength<FitT, GeneType>& _eo) const
{
return EO<FitT>::operator<(_eo);
}
};
/// to avoid conflicts between EO::operator< and vector<GeneType>::operator<
template <class FitT, class GeneType>
bool operator<(const eoVariableLength<FitT, GeneType>& _eo1, const eoVariableLength<FitT, GeneType>& _eo2)
{
return _eo1.operator<(_eo2);
}
#endif

1
eo/src/eoVariableLengthCrossover.h
View file

@ -28,7 +28,6 @@
#define _eoVariableLengthCrossover_h #define _eoVariableLengthCrossover_h
#include <eoFunctor.h> #include <eoFunctor.h>
#include <eoVariableLength.h>
#include <eoOp.h> #include <eoOp.h>
/** /**

16
eo/src/eoFixedLength.h → eo/src/eoVector.h
View file

@ -1,7 +1,7 @@
// -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*- // -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
// eoFixedLength.h // eoVector.h
// (c) GeNeura Team, 2000 - EEAAX 1999 - Maarten Keijzer 2000 // (c) GeNeura Team, 2000 - EEAAX 1999 - Maarten Keijzer 2000
/* /*
This library is free software; you can redistribute it and/or This library is free software; you can redistribute it and/or
@ -24,8 +24,8 @@
*/ */
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
#ifndef _eoFixedLength_h #ifndef _eoVector_h
#define _eoFixedLength_h #define _eoVector_h
#include <vector> #include <vector>
#include <EO.h> #include <EO.h>
@ -36,14 +36,14 @@
*/ */
template <class FitT, class GeneType> template <class FitT, class GeneType>
class eoFixedLength : public EO<FitT>, public std::vector<GeneType> class eoVector : public EO<FitT>, public std::vector<GeneType>
{ {
public : public :
typedef GeneType AtomType; typedef GeneType AtomType;
typedef std::vector<GeneType> ContainerType; typedef std::vector<GeneType> ContainerType;
eoFixedLength(unsigned size = 0, GeneType value = GeneType()) : EO<FitT>(), std::vector<GeneType>(size, value) eoVector(unsigned size = 0, GeneType value = GeneType()) : EO<FitT>(), std::vector<GeneType>(size, value)
{} {}
// we can't have a Ctor from a vector, it would create ambiguity // we can't have a Ctor from a vector, it would create ambiguity
@ -51,13 +51,13 @@ class eoFixedLength : public EO<FitT>, public std::vector<GeneType>
void value(std::vector<GeneType> _v) void value(std::vector<GeneType> _v)
{ {
if (_v.size() != size()) if (_v.size() != size())
throw runtime_error("Wrong size in vector assignation in eoFixedLength"); throw runtime_error("Wrong size in vector assignation in eoVector");
copy(_v.begin(), _v.end(), begin()); copy(_v.begin(), _v.end(), begin());
invalidate(); invalidate();
} }
/// to avoid conflicts between EO::operator< and vector<GeneType>::operator< /// to avoid conflicts between EO::operator< and vector<GeneType>::operator<
bool operator<(const eoFixedLength<FitT, GeneType>& _eo) const bool operator<(const eoVector<FitT, GeneType>& _eo) const
{ {
return EO<FitT>::operator<(_eo); return EO<FitT>::operator<(_eo);
} }
@ -95,7 +95,7 @@ class eoFixedLength : public EO<FitT>, public std::vector<GeneType>
/// to avoid conflicts between EO::operator< and vector<double>::operator< /// to avoid conflicts between EO::operator< and vector<double>::operator<
template <class FitT, class GeneType> template <class FitT, class GeneType>
bool operator<(const eoFixedLength<FitT, GeneType>& _eo1, const eoFixedLength<FitT, GeneType>& _eo2) bool operator<(const eoVector<FitT, GeneType>& _eo1, const eoVector<FitT, GeneType>& _eo2)
{ {
return _eo1.operator<(_eo2); return _eo1.operator<(_eo2);
} }

10
eo/src/es/eoEsFull.h
View file

@ -27,7 +27,7 @@
#ifndef _eoEsFull_h #ifndef _eoEsFull_h
#define _eoEsFull_h #define _eoEsFull_h
#include <eoFixedLength.h> #include <eoVector.h>
/** /**
\ingroup EvolutionStrategies \ingroup EvolutionStrategies
@ -37,18 +37,18 @@ rates and correlated mutations.
*/ */
template <class Fit> template <class Fit>
class eoEsFull : public eoFixedLength<Fit, double> class eoEsFull : public eoVector<Fit, double>
{ {
public : public :
typedef double Type; typedef double Type;
eoEsFull(void) : eoFixedLength<Fit, double>() {} eoEsFull(void) : eoVector<Fit, double>() {}
std::string className(void) const { return "eoEsFull"; } std::string className(void) const { return "eoEsFull"; }
void printOn(std::ostream& os) const void printOn(std::ostream& os) const
{ {
eoFixedLength<Fit,double>::printOn(os); eoVector<Fit,double>::printOn(os);
os << ' '; os << ' ';
std::copy(stdevs.begin(), stdevs.end(), std::ostream_iterator<double>(os, " ")); std::copy(stdevs.begin(), stdevs.end(), std::ostream_iterator<double>(os, " "));
@ -62,7 +62,7 @@ class eoEsFull : public eoFixedLength<Fit, double>
void readFrom(istream& is) void readFrom(istream& is)
{ {
eoFixedLength<Fit,double>::readFrom(is); eoVector<Fit,double>::readFrom(is);
stdevs.resize(size()); stdevs.resize(size());

10
eo/src/es/eoEsSimple.h
View file

@ -30,7 +30,7 @@
#include <EO.h> #include <EO.h>
#include <vector> #include <vector>
#include <eoFixedLength.h> #include <eoVector.h>
/** /**
\ingroup EvolutionStrategies \ingroup EvolutionStrategies
@ -44,26 +44,26 @@ see also eoEsStdev eoEsFull
*/ */
template <class Fit> template <class Fit>
class eoEsSimple : public eoFixedLength<Fit, double> class eoEsSimple : public eoVector<Fit, double>
{ {
public : public :
typedef double Type; typedef double Type;
eoEsSimple(void) : eoFixedLength<Fit, double>() {} eoEsSimple(void) : eoVector<Fit, double>() {}
std::string className(void) const { return "eoEsSimple"; } std::string className(void) const { return "eoEsSimple"; }
void printOn(std::ostream& os) const void printOn(std::ostream& os) const
{ {
eoFixedLength<Fit,double>::printOn(os); eoVector<Fit,double>::printOn(os);
os << ' ' << stdev << ' '; os << ' ' << stdev << ' ';
} }
void readFrom(istream& is) void readFrom(istream& is)
{ {
eoFixedLength<Fit,double>::readFrom(is); eoVector<Fit,double>::readFrom(is);
is >> stdev; is >> stdev;
} }

10
eo/src/es/eoEsStdev.h
View file

@ -27,7 +27,7 @@
#ifndef _eoEsStdev_h #ifndef _eoEsStdev_h
#define _eoEsStdev_h #define _eoEsStdev_h
#include <eoFixedLength.h> #include <eoVector.h>
/** /**
\ingroup EvolutionStrategies \ingroup EvolutionStrategies
@ -37,19 +37,19 @@ deviations.
*/ */
template <class Fit> template <class Fit>
class eoEsStdev : public eoFixedLength<Fit, double> class eoEsStdev : public eoVector<Fit, double>
{ {
public : public :
typedef double Type; typedef double Type;
eoEsStdev(void) : eoFixedLength<Fit, double>() {} eoEsStdev(void) : eoVector<Fit, double>() {}
std::string className(void) const { return "eoEsStdev"; } std::string className(void) const { return "eoEsStdev"; }
void printOn(std::ostream& os) const void printOn(std::ostream& os) const
{ {
eoFixedLength<Fit,double>::printOn(os); eoVector<Fit,double>::printOn(os);
os << ' '; os << ' ';
std::copy(stdevs.begin(), stdevs.end(), std::ostream_iterator<double>(os, " ")); std::copy(stdevs.begin(), stdevs.end(), std::ostream_iterator<double>(os, " "));
@ -59,7 +59,7 @@ class eoEsStdev : public eoFixedLength<Fit, double>
void readFrom(istream& is) void readFrom(istream& is)
{ {
eoFixedLength<Fit,double>::readFrom(is); eoVector<Fit,double>::readFrom(is);
stdevs.resize(size()); stdevs.resize(size());
unsigned i; unsigned i;

8
eo/src/es/eoReal.h
View file

@ -29,12 +29,12 @@
#include <iostream> // ostream, istream #include <iostream> // ostream, istream
#include <string> // string #include <string> // string
#include <eoFixedLength.h> #include <eoVector.h>
/** eoReal: implementation of simple real-valued chromosome. /** eoReal: implementation of simple real-valued chromosome.
* based on eoFixedLength class * based on eoVector class
*/ */
template <class FitT> class eoReal: public eoFixedLength<FitT, double> template <class FitT> class eoReal: public eoVector<FitT, double>
{ {
public: public:
@ -43,7 +43,7 @@ template <class FitT> class eoReal: public eoFixedLength<FitT, double>
* @param size Size of the vector * @param size Size of the vector
*/ */
eoReal(unsigned size = 0, double value = 0.0): eoReal(unsigned size = 0, double value = 0.0):
eoFixedLength<FitT, double>(size, value) {} eoVector<FitT, double>(size, value) {}
/// My class name. /// My class name.
string className() const string className() const

6
eo/src/ga/eoBit.h
View file

@ -39,7 +39,7 @@
#include <functional> // bind2nd #include <functional> // bind2nd
#include <string> // string #include <string> // string
#include <eoFixedLength.h> #include <eoVector.h>
/** /**
\defgroup bitstring \defgroup bitstring
@ -52,7 +52,7 @@
\ingroup bitstring \ingroup bitstring
* based on STL's vector<bool> specialization. * based on STL's vector<bool> specialization.
*/ */
template <class FitT> class eoBit: public eoFixedLength<FitT, bool> template <class FitT> class eoBit: public eoVector<FitT, bool>
{ {
public: public:
@ -61,7 +61,7 @@ template <class FitT> class eoBit: public eoFixedLength<FitT, bool>
* @param size Size of the binary string. * @param size Size of the binary string.
*/ */
eoBit(unsigned size = 0, bool value = false): eoBit(unsigned size = 0, bool value = false):
eoFixedLength<FitT, bool>(size, value) {} eoVector<FitT, bool>(size, value) {}
/// My class name. /// My class name.
string className() const string className() const

2
eo/src/utils/Makefile.am
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@ -10,7 +10,7 @@ lib_LIBRARIES = libeoutils.a
libeoutils_a_SOURCES = eoParser.cpp eoRNG.cpp eoState.cpp eoUpdater.cpp eoFileMonitor.cpp eoStdoutMonitor.cpp libeoutils_a_SOURCES = eoParser.cpp eoRNG.cpp eoState.cpp eoUpdater.cpp eoFileMonitor.cpp eoStdoutMonitor.cpp
libeoincdir = $(includedir)/eo/utils libeoincdir = $(includedir)/eo/utils
libeoinc_HEADERS = compatibility.h eoCheckPoint.h eoData.h eoDistance.h eoFDCStat.h eoFileMonitor.h eoGnuplot1DMonitor.h eoGnuplot1DSnapshot.h eoHowMany.h eoMonitor.h eoParam.h eoParser.h eoRNG.h eoStat.h eoScalarFitnessStat.h eoState.h eoStdoutMonitor.h eoUpdatable.h eoUpdater.h rnd_generators.h selectors.h libeoinc_HEADERS = compatibility.h eoCheckPoint.h eoData.h eoDistance.h eoFDCStat.h eoFileMonitor.h eoGnuplot1DMonitor.h eoGnuplot1DSnapshot.h eoHowMany.h eoMonitor.h eoParam.h eoParser.h eoRNG.h eoStat.h eoScalarFitnessStat.h eoState.h eoStdoutMonitor.h eoUpdatable.h eoUpdater.h rnd_generators.h eoRndGenerators.h selectors.h

3
eo/src/utils/eoRNG.cpp
View file

@ -1,10 +1,9 @@
#include <ctime> #include <ctime>
#include "eoRNG.h" #include "eoRNG.h"
/// The global object, should probably be initialized with an xor
/// between time and process_id.
namespace eo namespace eo
{ {
/// The Global random number generator.
eoRng rng((uint32) time(0)); eoRng rng((uint32) time(0));
} }

63
eo/src/utils/eoRnd.h
View file

@ -1,63 +0,0 @@
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
-----------------------------------------------------------------------------
eoRnd.h
(c) GeNeura Team, 1998
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
*/
//-----------------------------------------------------------------------------
/**
CVS Info: $Date: 2001-02-13 22:35:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/utils/Attic/eoRnd.h,v 1.1 2001-02-13 22:35:07 jmerelo Exp $ $Author: jmerelo $ $Log$
*/
#ifndef _EORND_H
#define _EORND_H
//-----------------------------------------------------------------------------
#include <eoObject.h>
//-----------------------------------------------------------------------------
// Class eoRnd
//-----------------------------------------------------------------------------
#include <stdlib.h> // srand
#include <time.h> // time
#include <stdexcept> // runtime_error
//-----------------------------------------------------------------------------
#include <eoPersistent.h>
//-----------------------------------------------------------------------------
/**
* Base class for a family of random 'number' generators. These 'numbers'
* can be anything, including full-fledged chromosomes.
*/
template<class T>
class eoRnd
{
public:
/** Main function: random generators act as functors, that return random numbers.
@return return a random number
*/
virtual T operator()() = 0;
};
#endif

149
eo/src/utils/eoRndGenerators.h Normal file
View file

@ -0,0 +1,149 @@
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
-----------------------------------------------------------------------------
eoRndGenerators.h
mimics the rnd_generator.h by putting the generators in the EO-hierarchy
(c) Maarten Keijzer (mak@dhi.dk) and GeNeura Team, 1999, 2000
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
*/
//-----------------------------------------------------------------------------
#ifndef eoRND_GENERATORS_H
#define eoRND_GENERATORS_H
#include "eoRNG.h"
#include <eoFunctor.h>
#include <stdexcept>
/**
By popular demand re-introducing a base class for a family of
random number generators. Derived members of this class are useful
to initialize fixed/variable length genotypes that have an 'atomic' type
in an indepent way (thus without employing any knowledge abou the problem domain).
The only change from previous EO's us the use of the suffix EO. This to
See derived classes eoUniformGenerator, eoBooleanGenerator, eoNormalGenerator and eoNegExpGenerator
*/
template <class T>
class eoRndGenerator : public eoF<T>
{
typedef T AtomType;
};
/**
The class eoUniform can be used in the STL generate function
to easily generate random floats and doubles. It can also
be used for ints and unsigneds by virtue of the static_cast
in the generator function.
Also present is a specialization for boolean, that will
ignore the minima and maxima that are possibly set and will
return an unbiased flip of a coin. For a biased flip, use the eoBoolean
either in [0, _max) if only 1 value (_max) is given
(or none, as _max defaults to 1.0)
or in [_min,_max) if 2 values are given (_min, _max)
*/
template <class T = double> class eoUniformGenerator : public eoRndGenerator<T>
{
// added new ctor with 2 params, and modified the data to minim and range
// (was maxim only). MS 3/11/2000
public :
eoUniformGenerator(T _max = T(1.0), eoRng& _rng = rng) :
minim(T(0.0)), range(_max), uniform(_rng) {}
eoUniformGenerator(T _min, T _max, eoRng& _rng = rng) :
minim(_min), range(_max-_min), uniform(_rng)
{
if (_min>_max)
throw logic_error("Min is greater than Max in uniform_generator");
}
/**
Generates the number, uses a static_cast to get the right behaviour
for ints and unsigneds
*/
T operator()(void) { return minim+static_cast<T>(uniform.uniform(range)); }
private :
T minim;
T range;
eoRng& uniform;
};
/// Specialization for bool, does an unbiased coin flip
template <>
bool eoUniformGenerator<bool>::operator()(void)
{
return uniform.flip(0.5);
}
/**
The class eoBooleanGenerator can be used in the STL generate function
to easily generate random booleans with a specified bias
*/
class eoBooleanGenerator : public eoRndGenerator<bool>
{
public :
eoBooleanGenerator(float _bias = 0.5, eoRng& _rng = rng) : bias(_bias), gen(_rng) {}
bool operator()(void) { return gen.flip(bias); }
private :
float bias;
eoRng& gen;
};
/**
The class normal_generator can be used in the STL generate function
to easily generate gaussian distributed floats and doubles. The user
can supply a standard deviation which defaults to 1.
*/
template <class T = double> class eoNormalGenerator : public eoRndGenerator<T>
{
public :
eoNormalGenerator(T _stdev = T(1.0), eoRng& _rng = rng) : stdev(_stdev), normal(_rng) {}
T operator()(void) { return (T) normal.normal(stdev); }
private :
T stdev;
eoRng& normal;
};
/**
The class negexp_generator can be used in the STL generate function
to easily generate negative exponential distributed floats and doubles. The user
can supply a mean.
*/
template <class T = double> class eoNegExpGenerator : public eoRndGenerator<T>
{
public :
eoNegExpGenerator(T _mean = 1.0, eoRng& _rng = rng) : mean(_mean), negexp(_rng) {}
T operator()(void) { return (T) negexp.negexp(mean); }
private :
T mean;
eoRng& negexp;
};
#endif

104
eo/src/utils/eoUniform.h
View file

@ -1,104 +0,0 @@
/* -*- mode: c++; c-indent-level: 4; c++-member-init-indent: 8; comment-column: 35; -*-
-----------------------------------------------------------------------------
eoUniform.h
Uniform random number generator;
(c) GeNeura Team, 1998
This library is free software; you can redistribute it and/or
modify it under the terms of the GNU Lesser General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public
License along with this library; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Contact: todos@geneura.ugr.es, http://geneura.ugr.es
*/
/**
CVS Info: $Date: 2001-02-13 22:35:07 $ $Header: /home/nojhan/dev/eodev/eodev_cvs/eo/src/utils/Attic/eoUniform.h,v 1.1 2001-02-13 22:35:07 jmerelo Exp $ $Author: jmerelo $ $Log$
*/
//-----------------------------------------------------------------------------
#ifndef _EOUNIFORM_H
#define _EOUNIFORM_H
//-----------------------------------------------------------------------------
#include <utils/eoRnd.h>
#include <utils/eoRNG.h>
//-----------------------------------------------------------------------------
// Class eoUniform
//-----------------------------------------------------------------------------
/** Generates uniform random number over the interval [min, max)
Uses the global variable rng
*/
using eo::rng;
template<class T>
class eoUniform: public eoRnd<T>
{
public:
/**
* Default constructor.
* @param _min The minimum value in the interval.
* @param _max The maximum value in the interval.
*/
eoUniform(T _min = 0, T _max = 1)
: eoRnd<T>(), min(_min), diff(_max - _min) {}
/**
* copy constructor.
* @param _rnd the other rnd
*/
eoUniform( const eoUniform& _rnd)
: eoRnd<T>( _rnd), min(_rnd.min), diff(_rnd.diff) {}
/** Returns an uniform random number over the interval [min, max)
Uses global rng object */
virtual T operator()() {
return min + T( rng.uniform( diff ) );
}
private:
T min;
double diff;
};
template<>
class eoUniform<bool>: public eoRnd<bool>
{
public:
/**
* Default constructor.
* @param _min The minimum value in the interval.
* @param _max The maximum value in the interval.
*/
eoUniform(bool _min = false, bool _max = true)
: eoRnd<bool>() {}
/** Returns an uniform random number over the interval [min, max)
Uses global rng object */
virtual bool operator()() {
return rng.flip(0.5);
}
private:
bool min;
double diff;
};
//-----------------------------------------------------------------------------
#endif

10
eo/test/t-eoRandom.cpp
View file

@ -24,23 +24,23 @@
*/ */
/** /**
CVS Info: $Date: 2001-02-13 22:39:56 $ $Author: jmerelo $ $Revision: 1.7 $ CVS Info: $Date: 2001-02-17 10:51:31 $ $Author: maartenkeijzer $ $Revision: 1.8 $
*/ */
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
#include <iostream> // cout #include <iostream> // cout
#include <strstream> // ostrstream, istrstream #include <strstream> // ostrstream, istrstream
#include <utils/eoUniform.h> // eoBin #include <utils/eoRndGenerators.h> // eoBin
//#include <eoNormal.h> //#include <eoNormal.h>
//#include <eoNegExp.h> //#include <eoNegExp.h>
//----------------------------------------------------------------------------- //-----------------------------------------------------------------------------
main() { main() {
eoUniform<float> u1(-2.5,3.5); eoUniformGenerator<float> u1(-2.5,3.5);
eoUniform<double> u2(0.003, 0.0005 ); eoUniformGenerator<double> u2(0.003, 0.0005 );
eoUniform<unsigned long> u3( 10000000U, 10000U); eoUniformGenerator<unsigned long> u3( 10000000U, 10000U);
/* eoNegExp<float> e1(3.5); /* eoNegExp<float> e1(3.5);
eoNegExp<double> e2(0.003 ); eoNegExp<double> e2(0.003 );
eoNegExp<long> e3( 10000U); eoNegExp<long> e3( 10000U);